{"action":"created","issue":{"url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/334","repository_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies","labels_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/334/labels{/name}","comments_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/334/comments","events_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/334/events","html_url":"https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/334","id":111224677,"number":334,"title":"Is there an appropriate term for reference allele?","user":{"login":"dandanxu","id":4357327,"avatar_url":"https://avatars.githubusercontent.com/u/4357327?v=3","gravatar_id":"","url":"https://api.github.com/users/dandanxu","html_url":"https://github.com/dandanxu","followers_url":"https://api.github.com/users/dandanxu/followers","following_url":"https://api.github.com/users/dandanxu/following{/other_user}","gists_url":"https://api.github.com/users/dandanxu/gists{/gist_id}","starred_url":"https://api.github.com/users/dandanxu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dandanxu/subscriptions","organizations_url":"https://api.github.com/users/dandanxu/orgs","repos_url":"https://api.github.com/users/dandanxu/repos","events_url":"https://api.github.com/users/dandanxu/events{/privacy}","received_events_url":"https://api.github.com/users/dandanxu/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"srynobio","id":1106139,"avatar_url":"https://avatars.githubusercontent.com/u/1106139?v=3","gravatar_id":"","url":"https://api.github.com/users/srynobio","html_url":"https://github.com/srynobio","followers_url":"https://api.github.com/users/srynobio/followers","following_url":"https://api.github.com/users/srynobio/following{/other_user}","gists_url":"https://api.github.com/users/srynobio/gists{/gist_id}","starred_url":"https://api.github.com/users/srynobio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/srynobio/subscriptions","organizations_url":"https://api.github.com/users/srynobio/orgs","repos_url":"https://api.github.com/users/srynobio/repos","events_url":"https://api.github.com/users/srynobio/events{/privacy}","received_events_url":"https://api.github.com/users/srynobio/received_events","type":"User","site_admin":false},"assignees":[{"login":"srynobio","id":1106139,"avatar_url":"https://avatars.githubusercontent.com/u/1106139?v=3","gravatar_id":"","url":"https://api.github.com/users/srynobio","html_url":"https://github.com/srynobio","followers_url":"https://api.github.com/users/srynobio/followers","following_url":"https://api.github.com/users/srynobio/following{/other_user}","gists_url":"https://api.github.com/users/srynobio/gists{/gist_id}","starred_url":"https://api.github.com/users/srynobio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/srynobio/subscriptions","organizations_url":"https://api.github.com/users/srynobio/orgs","repos_url":"https://api.github.com/users/srynobio/repos","events_url":"https://api.github.com/users/srynobio/events{/privacy}","received_events_url":"https://api.github.com/users/srynobio/received_events","type":"User","site_admin":false}],"milestone":null,"comments":22,"created_at":"2015-10-13T17:01:41Z","updated_at":"2016-07-21T18:31:18Z","closed_at":null,"body":"For when the sequenced allele is not different from the reference genome. See\r\n<img width=\"926\" alt=\"screen shot 2015-10-13 at 12 58 59\" src=\"https://cloud.githubusercontent.com/assets/4357327/10462028/53a43cf0-71aa-11e5-8057-6082e68e8a00.png\">.\r\nWe currently have an effect predictor that outputs everything in sequence ontology terms, but right now, if the variant is the reference allele at the locus, we don't have a good way of displaying that \"predicted effect\" or term for this."},"comment":{"url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/comments/234342512","html_url":"https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/334#issuecomment-234342512","issue_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/334","id":234342512,"user":{"login":"keilbeck","id":10870807,"avatar_url":"https://avatars.githubusercontent.com/u/10870807?v=3","gravatar_id":"","url":"https://api.github.com/users/keilbeck","html_url":"https://github.com/keilbeck","followers_url":"https://api.github.com/users/keilbeck/followers","following_url":"https://api.github.com/users/keilbeck/following{/other_user}","gists_url":"https://api.github.com/users/keilbeck/gists{/gist_id}","starred_url":"https://api.github.com/users/keilbeck/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/keilbeck/subscriptions","organizations_url":"https://api.github.com/users/keilbeck/orgs","repos_url":"https://api.github.com/users/keilbeck/repos","events_url":"https://api.github.com/users/keilbeck/events{/privacy}","received_events_url":"https://api.github.com/users/keilbeck/received_events","type":"User","site_admin":false},"created_at":"2016-07-21T18:31:18Z","updated_at":"2016-07-21T18:31:18Z","body":"Hi all\r\n\r\nI have moved sequence comparison to be the parent of sequence alteration.\r\nI have renamed no_variation to be no_sequence_alteration\r\nIt is a sibling of sequence_alteration. I updated the definition: A position or feature within a sequence that is identical to the comparable position or feature of a specified reference sequence.\r\n\r\nTim, do you need to go in and update the spec?\r\n\r\nDoes this fix your immediate issues?\r\n--K"}}
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