{"action":"closed","issue":{"url":"https://api.github.com/repos/vastgroup/vast-tools/issues/54","repository_url":"https://api.github.com/repos/vastgroup/vast-tools","labels_url":"https://api.github.com/repos/vastgroup/vast-tools/issues/54/labels{/name}","comments_url":"https://api.github.com/repos/vastgroup/vast-tools/issues/54/comments","events_url":"https://api.github.com/repos/vastgroup/vast-tools/issues/54/events","html_url":"https://github.com/vastgroup/vast-tools/issues/54","id":141352892,"number":54,"title":"Problems w/ vast-tools diff","user":{"login":"nunolbmorais","id":17885850,"avatar_url":"https://avatars.githubusercontent.com/u/17885850?v=3","gravatar_id":"","url":"https://api.github.com/users/nunolbmorais","html_url":"https://github.com/nunolbmorais","followers_url":"https://api.github.com/users/nunolbmorais/followers","following_url":"https://api.github.com/users/nunolbmorais/following{/other_user}","gists_url":"https://api.github.com/users/nunolbmorais/gists{/gist_id}","starred_url":"https://api.github.com/users/nunolbmorais/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nunolbmorais/subscriptions","organizations_url":"https://api.github.com/users/nunolbmorais/orgs","repos_url":"https://api.github.com/users/nunolbmorais/repos","events_url":"https://api.github.com/users/nunolbmorais/events{/privacy}","received_events_url":"https://api.github.com/users/nunolbmorais/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-03-16T17:56:16Z","updated_at":"2016-03-18T19:16:13Z","closed_at":"2016-03-18T19:16:13Z","body":"Hi guys,\r\n\r\nFor the last few weeks, we cannot run vast-tools diff, even after making sure vast-tools, R and all the required packages are up-to-date. We have tried it with different datasets and different combination of parameters and we always get the same error message:\r\nError: Unknown parameters: x\r\nExecution halted\r\n\r\nOne guess is that it could be related with the recent upgrade of ggplot2 to version 2.0.\r\n\r\nIf we ask for more than one core with the -c option, we get this (8 cores):\r\nError in plotListed[[it]][[5]] : subscript out of bounds\r\nIn addition: Warning message:\r\nIn mclapply(1:length(lines), function(i) { :\r\n  scheduled cores 4, 1, 5, 6, 3 encountered errors in user code, all values of the jobs will be affected\r\nExecution halted\r\n\r\nPlease let me know if there's any way I can help or if you need more info.\r\n\r\nBest wishes,\r\nNuno\r\n"}}