{"action":"opened","issue":{"url":"https://api.github.com/repos/dieterich-lab/DCC/issues/20","repository_url":"https://api.github.com/repos/dieterich-lab/DCC","labels_url":"https://api.github.com/repos/dieterich-lab/DCC/issues/20/labels{/name}","comments_url":"https://api.github.com/repos/dieterich-lab/DCC/issues/20/comments","events_url":"https://api.github.com/repos/dieterich-lab/DCC/issues/20/events","html_url":"https://github.com/dieterich-lab/DCC/issues/20","id":167814697,"number":20,"title":"convertjunctionfile2bamfile() fails if BAM files are not named in STAR fashion ","user":{"login":"tjakobi","id":1384800,"avatar_url":"https://avatars.githubusercontent.com/u/1384800?v=3","gravatar_id":"","url":"https://api.github.com/users/tjakobi","html_url":"https://github.com/tjakobi","followers_url":"https://api.github.com/users/tjakobi/followers","following_url":"https://api.github.com/users/tjakobi/following{/other_user}","gists_url":"https://api.github.com/users/tjakobi/gists{/gist_id}","starred_url":"https://api.github.com/users/tjakobi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tjakobi/subscriptions","organizations_url":"https://api.github.com/users/tjakobi/orgs","repos_url":"https://api.github.com/users/tjakobi/repos","events_url":"https://api.github.com/users/tjakobi/events{/privacy}","received_events_url":"https://api.github.com/users/tjakobi/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-07-27T09:50:35Z","updated_at":"2016-07-27T09:50:35Z","closed_at":null,"body":"convertjunctionfile2bamfile() is hard coded to only detect STAR-like BAM files. If there are BAM files with other naming schemes, they are not detected. Luckily the program would just terminate and not crash in that case. "}}
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