{"action":"created","issue":{"url":"https://api.github.com/repos/Bioconductor/Contributions/issues/21","repository_url":"https://api.github.com/repos/Bioconductor/Contributions","labels_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/21/labels{/name}","comments_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/21/comments","events_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/21/events","html_url":"https://github.com/Bioconductor/Contributions/issues/21","id":159739519,"number":21,"title":"aracne.networks, a data package containing gene regulatory networks assembled from TCGA data by the ARACNe algorithm","user":{"login":"federicogiorgi","id":1401900,"avatar_url":"https://avatars.githubusercontent.com/u/1401900?v=3","gravatar_id":"","url":"https://api.github.com/users/federicogiorgi","html_url":"https://github.com/federicogiorgi","followers_url":"https://api.github.com/users/federicogiorgi/followers","following_url":"https://api.github.com/users/federicogiorgi/following{/other_user}","gists_url":"https://api.github.com/users/federicogiorgi/gists{/gist_id}","starred_url":"https://api.github.com/users/federicogiorgi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/federicogiorgi/subscriptions","organizations_url":"https://api.github.com/users/federicogiorgi/orgs","repos_url":"https://api.github.com/users/federicogiorgi/repos","events_url":"https://api.github.com/users/federicogiorgi/events{/privacy}","received_events_url":"https://api.github.com/users/federicogiorgi/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/Bioconductor/Contributions/labels/2.%20review%20in%20progress","name":"2. review in progress","color":"1881c2"},{"url":"https://api.github.com/repos/Bioconductor/Contributions/labels/WARNINGS","name":"WARNINGS","color":"dd8822"}],"state":"open","locked":false,"assignee":{"login":"lshep","id":18724380,"avatar_url":"https://avatars.githubusercontent.com/u/18724380?v=3","gravatar_id":"","url":"https://api.github.com/users/lshep","html_url":"https://github.com/lshep","followers_url":"https://api.github.com/users/lshep/followers","following_url":"https://api.github.com/users/lshep/following{/other_user}","gists_url":"https://api.github.com/users/lshep/gists{/gist_id}","starred_url":"https://api.github.com/users/lshep/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lshep/subscriptions","organizations_url":"https://api.github.com/users/lshep/orgs","repos_url":"https://api.github.com/users/lshep/repos","events_url":"https://api.github.com/users/lshep/events{/privacy}","received_events_url":"https://api.github.com/users/lshep/received_events","type":"User","site_admin":false},"milestone":null,"comments":10,"created_at":"2016-06-10T23:06:18Z","updated_at":"2016-06-15T15:22:34Z","closed_at":null,"body":"Dear all,\r\n\r\nI would like to submit a Bioconductor package called aracne.networks. This package contains gene regulatory networks extracted from the biggest cancer dataset ever created (TCGA). These networks are used extensively in pipelines to infer protein activity, already implemented in the viper package, and have been the scaffold for several network-based analyses published over the years from the Califano Lab at Columbia University.\r\n\r\nRepository: https://github.com/federicogiorgi/aracne.networks\r\nConfirm the following by editing each check box to '[x]'\r\n\r\n I understand that by submitting my package to Bioconductor,\r\n- [x] the package source and all review commentary are visible to the\r\ngeneral public.\r\n\r\n- [x] I have read the Bioconductor Package Submission\r\ninstructions. My package is consistent with the Bioconductor\r\nPackage Guidelines.\r\n\r\n- [x] My package addresses statistical or bioinformatic issues related\r\nto the analysis and comprehension of high throughput genomic data.\r\n\r\n- [x] I am committed to the long-term maintenance of my package. This\r\nincludes monitoring the support site for issues that users may\r\nhave, subscribing to the bioc-devel mailing list to stay aware\r\nof developments in the Bioconductor community, responding promptly\r\nto requests for updates from the Core team in response to changes in\r\nR or underlying software.\r\n\r\nI am familiar with the essential aspects of Bioconductor software\r\nmanagement, including:\r\n\r\n- [x] The 'devel' branch for new packages and features.\r\n- [x] The stable 'release' branch, made available every six months, for bug fixes.\r\n- [x] Bioconductor version control using Subversion (optionally via GitHub).\r\nFor help with submitting your package, please subscribe and post questions\r\nto the bioc-devel mailing list."},"comment":{"url":"https://api.github.com/repos/Bioconductor/Contributions/issues/comments/226221796","html_url":"https://github.com/Bioconductor/Contributions/issues/21#issuecomment-226221796","issue_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/21","id":226221796,"user":{"login":"lshep","id":18724380,"avatar_url":"https://avatars.githubusercontent.com/u/18724380?v=3","gravatar_id":"","url":"https://api.github.com/users/lshep","html_url":"https://github.com/lshep","followers_url":"https://api.github.com/users/lshep/followers","following_url":"https://api.github.com/users/lshep/following{/other_user}","gists_url":"https://api.github.com/users/lshep/gists{/gist_id}","starred_url":"https://api.github.com/users/lshep/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lshep/subscriptions","organizations_url":"https://api.github.com/users/lshep/orgs","repos_url":"https://api.github.com/users/lshep/repos","events_url":"https://api.github.com/users/lshep/events{/privacy}","received_events_url":"https://api.github.com/users/lshep/received_events","type":"User","site_admin":false},"created_at":"2016-06-15T15:22:34Z","updated_at":"2016-06-15T15:22:34Z","body":"Hello,\n\nYou can ignore these WARNINGS for now as this will be an ExperimentalData\npackage.  We will review your package further and get back to you shortly.\n\nLori\n\nOn Tue, Jun 14, 2016 at 11:14 PM, federicogiorgi <notifications@github.com>\nwrote:\n\n> Dear all,\n>\n> not sure how to proceed now. The only warning I get concerns the size of\n> the package:\n>\n>\n>    -\n>\n>    checking installed package size ... NOTE\n>    installed size is 191.3Mb\n>    -\n>\n>    checking data for ASCII and uncompressed saves ... WARNING\n>    Note: significantly better compression could be obtained\n>    by using R CMD build --resave-data\n>\n> —\n> You are receiving this because you were assigned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Bioconductor/Contributions/issues/21#issuecomment-226077539>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe/AR22HKkXYvCAQru9OImXAUbLmL7JxyKaks5qL24GgaJpZM4IzZkp>\n> .\n>\n"}}
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