{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/34","repository_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip","labels_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/34/comments","events_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/34/events","html_url":"https://github.com/PacificBiosciences/FALCON_unzip/issues/34","id":172675427,"number":34,"title":"Possible mummer issue during hasm.sh","user":{"login":"peterdfields","id":202746,"avatar_url":"https://avatars.githubusercontent.com/u/202746?v=3","gravatar_id":"","url":"https://api.github.com/users/peterdfields","html_url":"https://github.com/peterdfields","followers_url":"https://api.github.com/users/peterdfields/followers","following_url":"https://api.github.com/users/peterdfields/following{/other_user}","gists_url":"https://api.github.com/users/peterdfields/gists{/gist_id}","starred_url":"https://api.github.com/users/peterdfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterdfields/subscriptions","organizations_url":"https://api.github.com/users/peterdfields/orgs","repos_url":"https://api.github.com/users/peterdfields/repos","events_url":"https://api.github.com/users/peterdfields/events{/privacy}","received_events_url":"https://api.github.com/users/peterdfields/received_events","type":"User","site_admin":false},"labels":[{"id":207471000,"url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"open","locked":false,"assignee":{"login":"pb-jchin","id":1071734,"avatar_url":"https://avatars.githubusercontent.com/u/1071734?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-jchin","html_url":"https://github.com/pb-jchin","followers_url":"https://api.github.com/users/pb-jchin/followers","following_url":"https://api.github.com/users/pb-jchin/following{/other_user}","gists_url":"https://api.github.com/users/pb-jchin/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-jchin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-jchin/subscriptions","organizations_url":"https://api.github.com/users/pb-jchin/orgs","repos_url":"https://api.github.com/users/pb-jchin/repos","events_url":"https://api.github.com/users/pb-jchin/events{/privacy}","received_events_url":"https://api.github.com/users/pb-jchin/received_events","type":"User","site_admin":false},"assignees":[{"login":"pb-jchin","id":1071734,"avatar_url":"https://avatars.githubusercontent.com/u/1071734?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-jchin","html_url":"https://github.com/pb-jchin","followers_url":"https://api.github.com/users/pb-jchin/followers","following_url":"https://api.github.com/users/pb-jchin/following{/other_user}","gists_url":"https://api.github.com/users/pb-jchin/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-jchin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-jchin/subscriptions","organizations_url":"https://api.github.com/users/pb-jchin/orgs","repos_url":"https://api.github.com/users/pb-jchin/repos","events_url":"https://api.github.com/users/pb-jchin/events{/privacy}","received_events_url":"https://api.github.com/users/pb-jchin/received_events","type":"User","site_admin":false}],"milestone":null,"comments":17,"created_at":"2016-08-23T11:30:03Z","updated_at":"2016-11-15T14:54:56Z","closed_at":null,"body":"A number of errors seem to be arising related to mummer during the hasm.sh step. A gist of the log can be found at:\n\nhttps://gist.github.com/peterdfields/99a9903350e6376f553791457eb8c379\n"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/comments/260662318","html_url":"https://github.com/PacificBiosciences/FALCON_unzip/issues/34#issuecomment-260662318","issue_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/34","id":260662318,"user":{"login":"danshu","id":9067238,"avatar_url":"https://avatars.githubusercontent.com/u/9067238?v=3","gravatar_id":"","url":"https://api.github.com/users/danshu","html_url":"https://github.com/danshu","followers_url":"https://api.github.com/users/danshu/followers","following_url":"https://api.github.com/users/danshu/following{/other_user}","gists_url":"https://api.github.com/users/danshu/gists{/gist_id}","starred_url":"https://api.github.com/users/danshu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/danshu/subscriptions","organizations_url":"https://api.github.com/users/danshu/orgs","repos_url":"https://api.github.com/users/danshu/repos","events_url":"https://api.github.com/users/danshu/events{/privacy}","received_events_url":"https://api.github.com/users/danshu/received_events","type":"User","site_admin":false},"created_at":"2016-11-15T14:54:56Z","updated_at":"2016-11-15T14:54:56Z","body":"@lxliangit Thanks for you reply.\r\nMay I know how did you tune 4-quiver to let it run successfully?\r\nMy \"fc_quiver.py\" step failed with the follwoing error message:\r\n\"001301F 9[E::hts_open_format] fail to open file '../4-quiver/reads/000011F_036.sam'\r\n../track_reads_h.sh: line 13: 13711 Segmentation fault (core dumped) fc_select_reads_from_bam.py input_bam.fofn\""}}
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