{"action":"created","issue":{"url":"https://api.github.com/repos/epurdom/clusterExperiment/issues/133","repository_url":"https://api.github.com/repos/epurdom/clusterExperiment","labels_url":"https://api.github.com/repos/epurdom/clusterExperiment/issues/133/labels{/name}","comments_url":"https://api.github.com/repos/epurdom/clusterExperiment/issues/133/comments","events_url":"https://api.github.com/repos/epurdom/clusterExperiment/issues/133/events","html_url":"https://github.com/epurdom/clusterExperiment/issues/133","id":156061858,"number":133,"title":"whichClusters in plotHeatmap does not work as intended when using clusterLabels values","user":{"login":"drisso","id":8451432,"avatar_url":"https://avatars.githubusercontent.com/u/8451432?v=3","gravatar_id":"","url":"https://api.github.com/users/drisso","html_url":"https://github.com/drisso","followers_url":"https://api.github.com/users/drisso/followers","following_url":"https://api.github.com/users/drisso/following{/other_user}","gists_url":"https://api.github.com/users/drisso/gists{/gist_id}","starred_url":"https://api.github.com/users/drisso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/drisso/subscriptions","organizations_url":"https://api.github.com/users/drisso/orgs","repos_url":"https://api.github.com/users/drisso/repos","events_url":"https://api.github.com/users/drisso/events{/privacy}","received_events_url":"https://api.github.com/users/drisso/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/epurdom/clusterExperiment/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-05-20T22:23:48Z","updated_at":"2016-05-24T20:23:55Z","closed_at":"2016-05-24T20:23:55Z","body":"The following example (from the vignette) does not show the \"combineMany,final\" clustering.\r\n\r\n```{r}\r\nplotHeatmap(ce,clusterSamplesData=\"dendrogramValue\",\r\n            whichClusters=c(\"mergeClusters\",\"combineMany,final\"),\r\n            main=\"Heatmap with clusterMany\",\r\n            sampleData=c(\"Biological_Condition\",\"Cluster2\"),annLegend=FALSE)\r\n```\r\n\r\nIt only displays the mergeClusters. Changing that to \"combineMany\" works -- I suspect this is because it reads it from clusterType?\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/epurdom/clusterExperiment/issues/comments/221390528","html_url":"https://github.com/epurdom/clusterExperiment/issues/133#issuecomment-221390528","issue_url":"https://api.github.com/repos/epurdom/clusterExperiment/issues/133","id":221390528,"user":{"login":"epurdom","id":7718485,"avatar_url":"https://avatars.githubusercontent.com/u/7718485?v=3","gravatar_id":"","url":"https://api.github.com/users/epurdom","html_url":"https://github.com/epurdom","followers_url":"https://api.github.com/users/epurdom/followers","following_url":"https://api.github.com/users/epurdom/following{/other_user}","gists_url":"https://api.github.com/users/epurdom/gists{/gist_id}","starred_url":"https://api.github.com/users/epurdom/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/epurdom/subscriptions","organizations_url":"https://api.github.com/users/epurdom/orgs","repos_url":"https://api.github.com/users/epurdom/repos","events_url":"https://api.github.com/users/epurdom/events{/privacy}","received_events_url":"https://api.github.com/users/epurdom/received_events","type":"User","site_admin":false},"created_at":"2016-05-24T20:23:55Z","updated_at":"2016-05-24T20:23:55Z","body":"Fixed this. Now pushed to develop."}}
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