{"action":"created","issue":{"url":"https://api.github.com/repos/biocore/qiime/issues/2108","repository_url":"https://api.github.com/repos/biocore/qiime","labels_url":"https://api.github.com/repos/biocore/qiime/issues/2108/labels{/name}","comments_url":"https://api.github.com/repos/biocore/qiime/issues/2108/comments","events_url":"https://api.github.com/repos/biocore/qiime/issues/2108/events","html_url":"https://github.com/biocore/qiime/issues/2108","id":117975683,"number":2108,"title":"Installing QIIME1.9X with Anaconda2","user":{"login":"Owen-haha","id":15647042,"avatar_url":"https://avatars.githubusercontent.com/u/15647042?v=3","gravatar_id":"","url":"https://api.github.com/users/Owen-haha","html_url":"https://github.com/Owen-haha","followers_url":"https://api.github.com/users/Owen-haha/followers","following_url":"https://api.github.com/users/Owen-haha/following{/other_user}","gists_url":"https://api.github.com/users/Owen-haha/gists{/gist_id}","starred_url":"https://api.github.com/users/Owen-haha/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Owen-haha/subscriptions","organizations_url":"https://api.github.com/users/Owen-haha/orgs","repos_url":"https://api.github.com/users/Owen-haha/repos","events_url":"https://api.github.com/users/Owen-haha/events{/privacy}","received_events_url":"https://api.github.com/users/Owen-haha/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2015-11-20T06:44:31Z","updated_at":"2016-03-18T17:27:50Z","closed_at":"2016-03-18T17:27:06Z","body":"Dear QIIME,\r\nI want to install QIIME on the Linux cluster without root authority. I try to install with Anaconda2. \r\nFollowing is my installing steps:\r\n1. Download and install Anaconda2-2.4.0 on my personal directory,\r\n2. Run command \"bin/conda install -c https://conda.anaconda.org/jorge qiime \" under the Anaconda directory.\r\nI did not receive any ERROR message during the installation. However, when I try to run \"./Anaconda2-2.4.0/bin/python2.7 bin/align_seqs.py\" I got the ERROR message that \"pkg_resources.DistributionNotFound: The 'mock' distribution was not found and is required by matplotlib\".\r\nHow can I correctly install the QIIME using Anaconda2 without root authority? \r\n\r\n\r\n######The detail of error message\r\nTraceback (most recent call last):\r\n  File \"bin/align_seqs.py\", line 4, in <module>\r\n    __import__('pkg_resources').run_script('qiime==1.9.0rc2', 'align_seqs.py')\r\n  File \"/ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0/lib/python2.7/site-packages/setuptools-18.4-py2.7.egg/pkg_resources/__init__.py\", line 3080, in <module>\r\n  File \"/ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0/lib/python2.7/site-packages/setuptools-18.4-py2.7.egg/pkg_resources/__init__.py\", line 3066, in _call_aside\r\n  File \"/ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0/lib/python2.7/site-packages/setuptools-18.4-py2.7.egg/pkg_resources/__init__.py\", line 3093, in _initialize_master_working_set\r\n  File \"/ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0/lib/python2.7/site-packages/setuptools-18.4-py2.7.egg/pkg_resources/__init__.py\", line 653, in _build_master\r\n  File \"/ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0/lib/python2.7/site-packages/setuptools-18.4-py2.7.egg/pkg_resources/__init__.py\", line 666, in _build_from_requirements\r\n  File \"/ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0/lib/python2.7/site-packages/setuptools-18.4-py2.7.egg/pkg_resources/__init__.py\", line 839, in resolve\r\npkg_resources.DistributionNotFound: The 'mock' distribution was not found and is required by matplotlib\r\n\r\n\r\n###### The detail of installation log information\r\nbin/conda install -c https://conda.anaconda.org/jorge qiime\r\nFetching package metadata: ......\r\nSolving package specifications: .........................................\r\nPackage plan for installation in environment /ifs4/BC_PUB/biosoft/pipeline/Package/Anaconda2-2.4.0:\r\n\r\nThe following packages will be downloaded:\r\n\r\n    package                    |            build\r\n    ---------------------------|-----------------\r\n    mpich2-1.4.1p1             |                0         2.6 MB\r\n    future-0.14.3              |           py27_0         609 KB\r\n    gdata-2.0.18               |           py27_0         764 KB\r\n    mpi4py-1.3.1               |           py27_0         1.3 MB\r\n    natsort-3.5.0              |           py27_0          26 KB\r\n    numpy-1.9.3                |           py27_0         5.7 MB\r\n    pytz-2015.7                |           py27_0         174 KB\r\n    qcli-0.1.1                 |           py27_0          16 KB\r\n    qiime-default-reference-0.1.1|           py27_0        20.1 MB\r\n    burrito-0.9.0              |           py27_0          61 KB\r\n    conda-3.18.6               |           py27_0         176 KB\r\n    pyqi-0.3.2                 |           py27_0          57 KB\r\n    scipy-0.16.0               |       np19py27_1        28.2 MB\r\n    biom-format-2.1.2          |           py27_0         343 KB\r\n    pandas-0.16.2              |       np19py27_0        10.8 MB\r\n    matplotlib-1.4.3           |       np19py27_2        44.5 MB\r\n    cogent-1.5.3               |       np19py27_0         2.3 MB\r\n    scikit-bio-0.2.3           |       np19py27_0         947 KB\r\n    burrito-fillings-0.1.0     |           py27_0         484 KB\r\n    emperor-0.9.5              |           py27_0         396 KB\r\n    pynast-1.2.2               |           py27_0          28 KB\r\n    qiime-1.9.0.dev            |           py27_0        12.0 MB\r\n    ------------------------------------------------------------\r\n                                           Total:       131.5 MB\r\n\r\nThe following NEW packages will be INSTALLED:\r\n\r\n    biom-format:             2.1.2-py27_0     \r\n    burrito:                 0.9.0-py27_0     \r\n    burrito-fillings:        0.1.0-py27_0     \r\n    cogent:                  1.5.3-np19py27_0 \r\n    emperor:                 0.9.5-py27_0     \r\n    future:                  0.14.3-py27_0    \r\n    gdata:                   2.0.18-py27_0    \r\n    mpi4py:                  1.3.1-py27_0     \r\n    mpich2:                  1.4.1p1-0        \r\n    natsort:                 3.5.0-py27_0     \r\n    pynast:                  1.2.2-py27_0     \r\n    pyqi:                    0.3.2-py27_0     \r\n    qcli:                    0.1.1-py27_0     \r\n    qiime:                   1.9.0.dev-py27_0 \r\n    qiime-default-reference: 0.1.1-py27_0     \r\n    scikit-bio:              0.2.3-np19py27_0 \r\n\r\nThe following packages will be UPDATED:\r\n\r\n    conda:                   3.18.3-py27_0      --> 3.18.6-py27_0    \r\n    matplotlib:              1.4.3-np110py27_2  --> 1.4.3-np19py27_2 \r\n    pytz:                    2015.6-py27_0      --> 2015.7-py27_0    \r\n    scipy:                   0.16.0-np110py27_1 --> 0.16.0-np19py27_1\r\n\r\nThe following packages will be DOWNGRADED:\r\n\r\n    numpy:                   1.10.1-py27_0      --> 1.9.3-py27_0     \r\n    pandas:                  0.17.0-np110py27_0 --> 0.16.2-np19py27_0\r\n\r\nProceed ([y]/n)? y\r\n\r\nFetching packages ...\r\nmpich2-1.4.1p1 100% |###############################################################################################################| Time: 0:00:04 651.06 kB/s\r\nfuture-0.14.3- 100% |###############################################################################################################| Time: 0:00:02 268.56 kB/s\r\ngdata-2.0.18-p 100% |###############################################################################################################| Time: 0:00:02 337.42 kB/s\r\nmpi4py-1.3.1-p 100% |###############################################################################################################| Time: 0:00:02 493.79 kB/s\r\nnatsort-3.5.0- 100% |###############################################################################################################| Time: 0:00:00 113.33 kB/s\r\nnumpy-1.9.3-py 100% |###############################################################################################################| Time: 0:00:06 887.04 kB/s\r\npytz-2015.7-py 100% |###############################################################################################################| Time: 0:00:01 152.31 kB/s\r\nqcli-0.1.1-py2 100% |###############################################################################################################| Time: 0:00:00  33.00 kB/s\r\nqiime-default- 100% |###############################################################################################################| Time: 0:00:13   1.52 MB/s\r\nburrito-0.9.0- 100% |###############################################################################################################| Time: 0:00:00 132.56 kB/s\r\nconda-3.18.6-p 100% |###############################################################################################################| Time: 0:00:01 153.50 kB/s\r\npyqi-0.3.2-py2 100% |###############################################################################################################| Time: 0:00:01  42.30 kB/s\r\nscipy-0.16.0-n 100% |###############################################################################################################| Time: 0:00:32 899.03 kB/s\r\nbiom-format-2. 100% |###############################################################################################################| Time: 0:00:01 245.31 kB/s\r\npandas-0.16.2- 100% |###############################################################################################################| Time: 0:00:15 743.33 kB/s\r\nmatplotlib-1.4 100% |###############################################################################################################| Time: 0:58:09  13.38 kB/s\r\ncogent-1.5.3-n 100% |###############################################################################################################| Time: 0:00:03 773.02 kB/s\r\nscikit-bio-0.2 100% |###############################################################################################################| Time: 0:00:03 322.48 kB/s\r\nburrito-fillin 100% |###############################################################################################################| Time: 0:00:01 301.40 kB/s\r\nemperor-0.9.5- 100% |###############################################################################################################| Time: 0:00:04  82.10 kB/s\r\npynast-1.2.2-p 100% |###############################################################################################################| Time: 0:00:00  37.33 kB/s\r\nqiime-1.9.0.de 100% |###############################################################################################################| Time: 0:00:12   1.05 MB/s\r\nExtracting packages ...\r\n[      COMPLETE      ]|##################################################################################################################################| 100%\r\nUnlinking packages ...\r\n[      COMPLETE      ]|##################################################################################################################################| 100%\r\nLinking packages ...\r\n[      COMPLETE      ]|######################################################################################################################| 100%\r\n"},"comment":{"url":"https://api.github.com/repos/biocore/qiime/issues/comments/198462739","html_url":"https://github.com/biocore/qiime/issues/2108#issuecomment-198462739","issue_url":"https://api.github.com/repos/biocore/qiime/issues/2108","id":198462739,"user":{"login":"gregcaporaso","id":192372,"avatar_url":"https://avatars.githubusercontent.com/u/192372?v=3","gravatar_id":"","url":"https://api.github.com/users/gregcaporaso","html_url":"https://github.com/gregcaporaso","followers_url":"https://api.github.com/users/gregcaporaso/followers","following_url":"https://api.github.com/users/gregcaporaso/following{/other_user}","gists_url":"https://api.github.com/users/gregcaporaso/gists{/gist_id}","starred_url":"https://api.github.com/users/gregcaporaso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gregcaporaso/subscriptions","organizations_url":"https://api.github.com/users/gregcaporaso/orgs","repos_url":"https://api.github.com/users/gregcaporaso/repos","events_url":"https://api.github.com/users/gregcaporaso/events{/privacy}","received_events_url":"https://api.github.com/users/gregcaporaso/received_events","type":"User","site_admin":false},"created_at":"2016-03-18T17:27:50Z","updated_at":"2016-03-18T17:27:50Z","body":"@bgruening, Galaxy integration may be better saved for QIIME 2, as it'll be a lot easier (and that will be conda-installable by design). "}}