{"action":"created","issue":{"url":"https://api.github.com/repos/fxia22/HINGE/issues/61","repository_url":"https://api.github.com/repos/fxia22/HINGE","labels_url":"https://api.github.com/repos/fxia22/HINGE/issues/61/labels{/name}","comments_url":"https://api.github.com/repos/fxia22/HINGE/issues/61/comments","events_url":"https://api.github.com/repos/fxia22/HINGE/issues/61/events","html_url":"https://github.com/fxia22/HINGE/issues/61","id":174479223,"number":61,"title":"DBsplit needed before HPC.daligner draft ?","user":{"login":"agroppi","id":5609985,"avatar_url":"https://avatars.githubusercontent.com/u/5609985?v=3","gravatar_id":"","url":"https://api.github.com/users/agroppi","html_url":"https://github.com/agroppi","followers_url":"https://api.github.com/users/agroppi/followers","following_url":"https://api.github.com/users/agroppi/following{/other_user}","gists_url":"https://api.github.com/users/agroppi/gists{/gist_id}","starred_url":"https://api.github.com/users/agroppi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/agroppi/subscriptions","organizations_url":"https://api.github.com/users/agroppi/orgs","repos_url":"https://api.github.com/users/agroppi/repos","events_url":"https://api.github.com/users/agroppi/events{/privacy}","received_events_url":"https://api.github.com/users/agroppi/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":19,"created_at":"2016-09-01T09:37:51Z","updated_at":"2016-09-28T14:06:47Z","closed_at":null,"body":"Hi,\r\n\r\nStep by step I'm running HINGE\r\nThank to @govinda-kamath and @ilanshom (https://github.com/fxia22/HINGE/issues/60) I was able to reach the \"get consensus assembly\" step.\r\nBut I'm facing this error : \r\n\r\n # Daligner jobs (3)\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.1 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.2 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.3 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.4 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.5 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.6 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.7 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.8 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\ndaligner -A -k20 -h50 -e0.85 vriparia_test.9 draft\r\ndaligner: Block draft contains reads < 20bp long !  Run DBsplit.\r\n\r\nDo I have to run DBsplit like in the initial step ? : \r\n\r\n`DBsplit draft -x500 -s200`\r\n\r\nThanks"},"comment":{"url":"https://api.github.com/repos/fxia22/HINGE/issues/comments/250176580","html_url":"https://github.com/fxia22/HINGE/issues/61#issuecomment-250176580","issue_url":"https://api.github.com/repos/fxia22/HINGE/issues/61","id":250176580,"user":{"login":"agroppi","id":5609985,"avatar_url":"https://avatars.githubusercontent.com/u/5609985?v=3","gravatar_id":"","url":"https://api.github.com/users/agroppi","html_url":"https://github.com/agroppi","followers_url":"https://api.github.com/users/agroppi/followers","following_url":"https://api.github.com/users/agroppi/following{/other_user}","gists_url":"https://api.github.com/users/agroppi/gists{/gist_id}","starred_url":"https://api.github.com/users/agroppi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/agroppi/subscriptions","organizations_url":"https://api.github.com/users/agroppi/orgs","repos_url":"https://api.github.com/users/agroppi/repos","events_url":"https://api.github.com/users/agroppi/events{/privacy}","received_events_url":"https://api.github.com/users/agroppi/received_events","type":"User","site_admin":false},"created_at":"2016-09-28T14:06:47Z","updated_at":"2016-09-28T14:06:47Z","body":"Sadly ... discouraging ...\r\nPlease find here my script.sh and the error log\r\nThanks again for watching this\r\nRegards\r\nAlexis\r\nPS : The first steps (correct_head.py ; fasta2DB ; DBsplit and HPC.daligner have been already run before)\r\n\r\n[log.zip](https://github.com/fxia22/HINGE/files/498234/log.zip)\r\n[script.zip](https://github.com/fxia22/HINGE/files/498233/script.zip)\r\n\r\n\r\n"}}
{"actor":{"display_login":"agroppi"}}