{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/442","repository_url":"https://api.github.com/repos/PacificBiosciences/FALCON","labels_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/442/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/442/comments","events_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/442/events","html_url":"https://github.com/PacificBiosciences/FALCON/issues/442","id":177318612,"number":442,"title":"contig names usually end with \"F\" or \"R\".  What about the others?","user":{"login":"dgordon562","id":11529099,"avatar_url":"https://avatars.githubusercontent.com/u/11529099?v=3","gravatar_id":"","url":"https://api.github.com/users/dgordon562","html_url":"https://github.com/dgordon562","followers_url":"https://api.github.com/users/dgordon562/followers","following_url":"https://api.github.com/users/dgordon562/following{/other_user}","gists_url":"https://api.github.com/users/dgordon562/gists{/gist_id}","starred_url":"https://api.github.com/users/dgordon562/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dgordon562/subscriptions","organizations_url":"https://api.github.com/users/dgordon562/orgs","repos_url":"https://api.github.com/users/dgordon562/repos","events_url":"https://api.github.com/users/dgordon562/events{/privacy}","received_events_url":"https://api.github.com/users/dgordon562/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-09-15T23:58:36Z","updated_at":"2016-09-16T13:00:14Z","closed_at":null,"body":"What is the significance of the contigs whose names do NOT end in F or R?"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/comments/247594355","html_url":"https://github.com/PacificBiosciences/FALCON/issues/442#issuecomment-247594355","issue_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/442","id":247594355,"user":{"login":"pb-jchin","id":1071734,"avatar_url":"https://avatars.githubusercontent.com/u/1071734?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-jchin","html_url":"https://github.com/pb-jchin","followers_url":"https://api.github.com/users/pb-jchin/followers","following_url":"https://api.github.com/users/pb-jchin/following{/other_user}","gists_url":"https://api.github.com/users/pb-jchin/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-jchin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-jchin/subscriptions","organizations_url":"https://api.github.com/users/pb-jchin/orgs","repos_url":"https://api.github.com/users/pb-jchin/repos","events_url":"https://api.github.com/users/pb-jchin/events{/privacy}","received_events_url":"https://api.github.com/users/pb-jchin/received_events","type":"User","site_admin":false},"created_at":"2016-09-16T13:00:14Z","updated_at":"2016-09-16T13:00:14Z","body":"```\r\nThe file ctg_paths encodes the graph for each contig after the unitigs are analyzed and put into contigs. Each line has 7 columns. The first column is the contig ID. The contig ID are just the serial numbers followed by R or F. Two contigs with same serial number but different endings are \"dual\" to each other. Namely, they are constructed from \"dual\" edges and they are mostly reverse complemented to each other except near the ends of the contigs. The second column is the type of contig. If a unitig is circular (the beginning node and the ending node are the same), then it will be marked as \"ctg_circular\". Everything else will be \"ctg_linear\". In some case, even a contig is marked as \"ctg_linear\", it can be still a circular contig if the beginning node and the ending node are the same but it is not a \"simple\" path. One can detect that by checking the beginning and ending nodes if necessary.\r\n\r\n```\r\ncf. https://github.com/PacificBiosciences/FALCON/wiki/Manual\r\n"}}
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