{"push_id":1244619563,"size":1,"distinct_size":1,"ref":"refs/heads/jg_importbgen2","head":"290433f4a04dc0b302658324ac98da701b0e17fd","before":"f36e7cc373506108b8da11834e0ae4e3d0dbdeee","commits":[{"sha":"290433f4a04dc0b302658324ac98da701b0e17fd","author":{"name":"Jackie Goldstein","email":"5aa922e213c309c15e3bf52cb7a5a92c88db1637@broadinstitute.org"},"message":"Added import of PLINK, GEN, BGEN files and support for dosage data\n\nA summary of major changes:\n\n - The genotype schema has changed from pl to px, where px is an Array[Int] that stores probabilifrom pl to px, where px is an Array[Int] that stores probabilities (phred or linear scaled). g.pl and g.dosage are used for accessing the PLs and/or dosages.\n\n - The VariantMetadata includes information about whether the dataset is dosage data\n\n - Can use indexbgen and importbgen to load BGEN files\n\n - Can use importplink to load PLINK binary files\n\n - Can use importgen to load GEN files and exportgen to export data in GEN format\n\n - Reorganized the VCF import/export scripts to the io folder\n\nFix indentation.","distinct":true,"url":"https://api.github.com/repos/cseed/hail/commits/290433f4a04dc0b302658324ac98da701b0e17fd"}]}
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