{"action":"opened","issue":{"url":"https://api.github.com/repos/zeeev/wham/issues/36","repository_url":"https://api.github.com/repos/zeeev/wham","labels_url":"https://api.github.com/repos/zeeev/wham/issues/36/labels{/name}","comments_url":"https://api.github.com/repos/zeeev/wham/issues/36/comments","events_url":"https://api.github.com/repos/zeeev/wham/issues/36/events","html_url":"https://github.com/zeeev/wham/issues/36","id":156099940,"number":36,"title":"WHAM taking too long to run","user":{"login":"abolia","id":7905109,"avatar_url":"https://avatars.githubusercontent.com/u/7905109?v=3","gravatar_id":"","url":"https://api.github.com/users/abolia","html_url":"https://github.com/abolia","followers_url":"https://api.github.com/users/abolia/followers","following_url":"https://api.github.com/users/abolia/following{/other_user}","gists_url":"https://api.github.com/users/abolia/gists{/gist_id}","starred_url":"https://api.github.com/users/abolia/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/abolia/subscriptions","organizations_url":"https://api.github.com/users/abolia/orgs","repos_url":"https://api.github.com/users/abolia/repos","events_url":"https://api.github.com/users/abolia/events{/privacy}","received_events_url":"https://api.github.com/users/abolia/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-05-21T12:33:58Z","updated_at":"2016-05-21T12:33:58Z","closed_at":null,"body":"Hi Zev, \r\n\r\nSorry for re-posting this. I posted it on a closed issue so re-posting this. \r\n\r\n\"\r\nI am trying to run WHAM for some single end data. But its been more than 10 hours and it still says \"**INFO: gathering stats for each bam file**.\" \r\nI have already removed this https://github.com/zeeev/wham/blob/master/src/bin/multi-wham-testing.cpp#L622\r\nso it does not throw out error and is still running. Moreover, there are only 84 @SQ tags in the header file and its a pretty small BAM file with about ~ 71000 reads.\r\n\r\nDo you think it might be coz its single end data. Please let me know.\r\n\r\nThank you for all your help.\r\n\"\r\n\r\nThanks, \r\nAshini"}}
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