{"action":"created","issue":{"url":"https://api.github.com/repos/fulcrumgenomics/fgbio/issues/9","repository_url":"https://api.github.com/repos/fulcrumgenomics/fgbio","labels_url":"https://api.github.com/repos/fulcrumgenomics/fgbio/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/fulcrumgenomics/fgbio/issues/9/comments","events_url":"https://api.github.com/repos/fulcrumgenomics/fgbio/issues/9/events","html_url":"https://github.com/fulcrumgenomics/fgbio/pull/9","id":138365186,"number":9,"title":"Adding a tool to demultiplex FASTQs using an Illumina Sample Sheet","user":{"login":"nh13","id":846274,"avatar_url":"https://avatars.githubusercontent.com/u/846274?v=3","gravatar_id":"","url":"https://api.github.com/users/nh13","html_url":"https://github.com/nh13","followers_url":"https://api.github.com/users/nh13/followers","following_url":"https://api.github.com/users/nh13/following{/other_user}","gists_url":"https://api.github.com/users/nh13/gists{/gist_id}","starred_url":"https://api.github.com/users/nh13/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nh13/subscriptions","organizations_url":"https://api.github.com/users/nh13/orgs","repos_url":"https://api.github.com/users/nh13/repos","events_url":"https://api.github.com/users/nh13/events{/privacy}","received_events_url":"https://api.github.com/users/nh13/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-03-04T03:22:55Z","updated_at":"2016-07-29T03:59:16Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/fulcrumgenomics/fgbio/pulls/9","html_url":"https://github.com/fulcrumgenomics/fgbio/pull/9","diff_url":"https://github.com/fulcrumgenomics/fgbio/pull/9.diff","patch_url":"https://github.com/fulcrumgenomics/fgbio/pull/9.patch"},"body":""},"comment":{"url":"https://api.github.com/repos/fulcrumgenomics/fgbio/issues/comments/236089171","html_url":"https://github.com/fulcrumgenomics/fgbio/pull/9#issuecomment-236089171","issue_url":"https://api.github.com/repos/fulcrumgenomics/fgbio/issues/9","id":236089171,"user":{"login":"nh13","id":846274,"avatar_url":"https://avatars.githubusercontent.com/u/846274?v=3","gravatar_id":"","url":"https://api.github.com/users/nh13","html_url":"https://github.com/nh13","followers_url":"https://api.github.com/users/nh13/followers","following_url":"https://api.github.com/users/nh13/following{/other_user}","gists_url":"https://api.github.com/users/nh13/gists{/gist_id}","starred_url":"https://api.github.com/users/nh13/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nh13/subscriptions","organizations_url":"https://api.github.com/users/nh13/orgs","repos_url":"https://api.github.com/users/nh13/repos","events_url":"https://api.github.com/users/nh13/events{/privacy}","received_events_url":"https://api.github.com/users/nh13/received_events","type":"User","site_admin":false},"created_at":"2016-07-29T03:59:16Z","updated_at":"2016-07-29T03:59:16Z","body":"@tfenne there are a number of things that this PR includes:\r\n\r\n1. `DemuxFastqs` - the tool that motivates this PR.  It takes in a set of FASTQs and a sample sheet to demultiplex them appropriately, including handling sample and molecular barcodes.\r\n2. `Metric` - a base class for all metrics (replaces Picard's `MetricBase`).  The `SampleBarcodeMetric` case class is an example of such a metric.\r\n3. `Sample`, `SampleBarcode`, and `SampleSheet` are used to parse and store information related to an Illumina Experiment Manager sample sheet.\r\n"}}
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