{"action":"closed","issue":{"url":"https://api.github.com/repos/SBCS-Bioinformatics/R-Core/issues/101","repository_url":"https://api.github.com/repos/SBCS-Bioinformatics/R-Core","labels_url":"https://api.github.com/repos/SBCS-Bioinformatics/R-Core/issues/101/labels{/name}","comments_url":"https://api.github.com/repos/SBCS-Bioinformatics/R-Core/issues/101/comments","events_url":"https://api.github.com/repos/SBCS-Bioinformatics/R-Core/issues/101/events","html_url":"https://github.com/SBCS-Bioinformatics/R-Core/issues/101","id":137824642,"number":101,"title":"Error: object 'Var2' not found","user":{"login":"IsmailM","id":5578375,"avatar_url":"https://avatars.githubusercontent.com/u/5578375?v=3","gravatar_id":"","url":"https://api.github.com/users/IsmailM","html_url":"https://github.com/IsmailM","followers_url":"https://api.github.com/users/IsmailM/followers","following_url":"https://api.github.com/users/IsmailM/following{/other_user}","gists_url":"https://api.github.com/users/IsmailM/gists{/gist_id}","starred_url":"https://api.github.com/users/IsmailM/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/IsmailM/subscriptions","organizations_url":"https://api.github.com/users/IsmailM/orgs","repos_url":"https://api.github.com/users/IsmailM/repos","events_url":"https://api.github.com/users/IsmailM/events{/privacy}","received_events_url":"https://api.github.com/users/IsmailM/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/SBCS-Bioinformatics/R-Core/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-03-02T09:45:06Z","updated_at":"2016-03-20T22:58:50Z","closed_at":"2016-03-20T22:58:50Z","body":"This error affects 2 Geo Datasets\r\n\r\n```\r\nRunning: Rscript 'R-Core/overview.R' --dbrdata analysis/GDS977/GDS977.RData --rundir 'analysis/GDS977/overview/' --analyse 'Boxplot,PCA' --accession GDS977 --factor 'strain' --popA 'fliA-, V1' --popB 'flhA-, V1,V26' --popname1 'Group1' --popname2 'Group2' --dev TRUE\r\n\r\n\r\n[1] \"Overview: GeoDiver is starting\"\r\n[1] \"Overview: Libraries have been loaded\"\r\n[1] \"Overview: Data Preprocessed!\"\r\nError in `[.data.frame`(expression.info, Var2, \"factor.type\") : \r\n  object 'Var2' not found\r\nCalls: within ... within.data.frame -> eval -> eval -> [ -> [.data.frame\r\nExecution halted\r\n\r\n```\r\n\r\n```\r\n\r\nRunning: Rscript 'R-Core/overview.R' --dbrdata analysis/GDS95/GDS95.RData --rundir 'analysis/GDS95/overview/' --analyse 'Boxplot,PCA' --accession GDS95 --factor 'dose' --popA 'no indole' --popB 'indole, 10 ug/ml,indole, 15 ug/ml' --popname1 'Group1' --popname2 'Group2' --dev TRUE\r\n\r\n\r\n[1] \"Overview: GeoDiver is starting\"\r\n[1] \"Overview: Libraries have been loaded\"\r\n[1] \"Overview: Data Preprocessed!\"\r\nError in `[.data.frame`(expression.info, Var2, \"factor.type\") : \r\n  object 'Var2' not found\r\nCalls: within ... within.data.frame -> eval -> eval -> [ -> [.data.frame\r\nExecution halted\r\n```"}}