{"action":"closed","issue":{"url":"https://api.github.com/repos/brentp/vcfanno/issues/29","repository_url":"https://api.github.com/repos/brentp/vcfanno","labels_url":"https://api.github.com/repos/brentp/vcfanno/issues/29/labels{/name}","comments_url":"https://api.github.com/repos/brentp/vcfanno/issues/29/comments","events_url":"https://api.github.com/repos/brentp/vcfanno/issues/29/events","html_url":"https://github.com/brentp/vcfanno/issues/29","id":166136902,"number":29,"title":"lua function on samples","user":{"login":"dwaggott","id":3149944,"avatar_url":"https://avatars.githubusercontent.com/u/3149944?v=3","gravatar_id":"","url":"https://api.github.com/users/dwaggott","html_url":"https://github.com/dwaggott","followers_url":"https://api.github.com/users/dwaggott/followers","following_url":"https://api.github.com/users/dwaggott/following{/other_user}","gists_url":"https://api.github.com/users/dwaggott/gists{/gist_id}","starred_url":"https://api.github.com/users/dwaggott/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dwaggott/subscriptions","organizations_url":"https://api.github.com/users/dwaggott/orgs","repos_url":"https://api.github.com/users/dwaggott/repos","events_url":"https://api.github.com/users/dwaggott/events{/privacy}","received_events_url":"https://api.github.com/users/dwaggott/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-07-18T16:33:40Z","updated_at":"2016-07-18T16:59:59Z","closed_at":"2016-07-18T16:59:59Z","body":"Do you have any examples on how to call sample GT or PL format tags using a custom lua function? I'm looking for a way to annotation variants that are consistent with affection from a ped file. A binary flag or a super basic LOD score equivalent based on the genotype likelihoods is the plan. \r\n\r\n\r\n"}}
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