{"action":"created","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1471","repository_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1471/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1471/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1471/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1471","id":165514038,"number":1471,"title":"hg19-resources.yaml dbsnp version","user":{"login":"duxan","id":3861912,"avatar_url":"https://avatars.githubusercontent.com/u/3861912?v=3","gravatar_id":"","url":"https://api.github.com/users/duxan","html_url":"https://github.com/duxan","followers_url":"https://api.github.com/users/duxan/followers","following_url":"https://api.github.com/users/duxan/following{/other_user}","gists_url":"https://api.github.com/users/duxan/gists{/gist_id}","starred_url":"https://api.github.com/users/duxan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/duxan/subscriptions","organizations_url":"https://api.github.com/users/duxan/orgs","repos_url":"https://api.github.com/users/duxan/repos","events_url":"https://api.github.com/users/duxan/events{/privacy}","received_events_url":"https://api.github.com/users/duxan/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-07-14T09:10:46Z","updated_at":"2016-07-14T15:03:28Z","closed_at":"2016-07-14T15:02:21Z","body":"Hi, after data upgrade (bcbio_nextgen.py upgrade --data) pipeline is still looking for dbsnp_138.vcf.gz while it seems that recently v147 is introduced (https://github.com/chapmanb/cloudbiolinux/commit/0010429e56cef9af18837266b516989393bd2bc5)"},"comment":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/comments/232692185","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1471#issuecomment-232692185","issue_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1471","id":232692185,"user":{"login":"chapmanb","id":39391,"avatar_url":"https://avatars.githubusercontent.com/u/39391?v=3","gravatar_id":"","url":"https://api.github.com/users/chapmanb","html_url":"https://github.com/chapmanb","followers_url":"https://api.github.com/users/chapmanb/followers","following_url":"https://api.github.com/users/chapmanb/following{/other_user}","gists_url":"https://api.github.com/users/chapmanb/gists{/gist_id}","starred_url":"https://api.github.com/users/chapmanb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chapmanb/subscriptions","organizations_url":"https://api.github.com/users/chapmanb/orgs","repos_url":"https://api.github.com/users/chapmanb/repos","events_url":"https://api.github.com/users/chapmanb/events{/privacy}","received_events_url":"https://api.github.com/users/chapmanb/received_events","type":"User","site_admin":false},"created_at":"2016-07-14T15:03:28Z","updated_at":"2016-07-14T15:03:28Z","body":"Dušan -- thank you for the report and apologies about the oversight. I bumped the references in the bcbio configuration files so if you do `bcbio_nextgen.py upgrade --data` again it should look for the newer files. Hope this gets everything working for you."}}
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