{"action":"created","issue":{"url":"https://api.github.com/repos/biorack/metatlas/issues/64","repository_url":"https://api.github.com/repos/biorack/metatlas","labels_url":"https://api.github.com/repos/biorack/metatlas/issues/64/labels{/name}","comments_url":"https://api.github.com/repos/biorack/metatlas/issues/64/comments","events_url":"https://api.github.com/repos/biorack/metatlas/issues/64/events","html_url":"https://github.com/biorack/metatlas/issues/64","id":117728822,"number":64,"title":"Make an RT Corrector and Compound Viewer App","user":{"login":"blink1073","id":2096628,"avatar_url":"https://avatars.githubusercontent.com/u/2096628?v=3","gravatar_id":"","url":"https://api.github.com/users/blink1073","html_url":"https://github.com/blink1073","followers_url":"https://api.github.com/users/blink1073/followers","following_url":"https://api.github.com/users/blink1073/following{/other_user}","gists_url":"https://api.github.com/users/blink1073/gists{/gist_id}","starred_url":"https://api.github.com/users/blink1073/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/blink1073/subscriptions","organizations_url":"https://api.github.com/users/blink1073/orgs","repos_url":"https://api.github.com/users/blink1073/repos","events_url":"https://api.github.com/users/blink1073/events{/privacy}","received_events_url":"https://api.github.com/users/blink1073/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"aitatanit","id":2544445,"avatar_url":"https://avatars.githubusercontent.com/u/2544445?v=3","gravatar_id":"","url":"https://api.github.com/users/aitatanit","html_url":"https://github.com/aitatanit","followers_url":"https://api.github.com/users/aitatanit/followers","following_url":"https://api.github.com/users/aitatanit/following{/other_user}","gists_url":"https://api.github.com/users/aitatanit/gists{/gist_id}","starred_url":"https://api.github.com/users/aitatanit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aitatanit/subscriptions","organizations_url":"https://api.github.com/users/aitatanit/orgs","repos_url":"https://api.github.com/users/aitatanit/repos","events_url":"https://api.github.com/users/aitatanit/events{/privacy}","received_events_url":"https://api.github.com/users/aitatanit/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/biorack/metatlas/milestones/2","html_url":"https://github.com/biorack/metatlas/milestones/An%20easy%20to%20use%20workflow%20for%20grouping%20files%20and%20running%20them%20against%20a%20pre-existing%20Atlas","labels_url":"https://api.github.com/repos/biorack/metatlas/milestones/2/labels","id":1570797,"number":2,"title":"An easy to use workflow for grouping files and running them against a pre-existing Atlas","description":"This workflow will facilitate a user to \r\n* Identify and select their files\r\n* Build groups that subset their files into meaningful sets\r\n* Select an appropriate Atlas\r\n* Extract data from their files using that Atlas\r\n* Download the chromatograms, identification figures, spreadsheets, and errorbar plots\r\n\r\nThis should give them a good head-start to begin analysis and interpretation.","creator":{"login":"benbowen","id":810953,"avatar_url":"https://avatars.githubusercontent.com/u/810953?v=3","gravatar_id":"","url":"https://api.github.com/users/benbowen","html_url":"https://github.com/benbowen","followers_url":"https://api.github.com/users/benbowen/followers","following_url":"https://api.github.com/users/benbowen/following{/other_user}","gists_url":"https://api.github.com/users/benbowen/gists{/gist_id}","starred_url":"https://api.github.com/users/benbowen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/benbowen/subscriptions","organizations_url":"https://api.github.com/users/benbowen/orgs","repos_url":"https://api.github.com/users/benbowen/repos","events_url":"https://api.github.com/users/benbowen/events{/privacy}","received_events_url":"https://api.github.com/users/benbowen/received_events","type":"User","site_admin":false},"open_issues":5,"closed_issues":3,"state":"open","created_at":"2016-02-08T17:04:59Z","updated_at":"2016-05-30T03:09:04Z","due_on":"2016-02-29T08:00:00Z","closed_at":null},"comments":4,"created_at":"2015-11-19T02:42:20Z","updated_at":"2016-06-17T14:29:11Z","closed_at":null,"body":"Below is the one from MetAtlas 1.0 and it ran in matplotlib outside of the browser.  Seems like making something like this would touch all the moving parts of MetAtlas 2.0.\r\n\r\n![image](https://cloud.githubusercontent.com/assets/2096628/11260862/c4c6fd0e-8e34-11e5-8c36-46e981781bc1.png)\r\n\r\nYou can click through all the compounds in an Atlas and adjust the retention times for that compound by sliding the blue and red vertical boxes.\r\n"},"comment":{"url":"https://api.github.com/repos/biorack/metatlas/issues/comments/226784081","html_url":"https://github.com/biorack/metatlas/issues/64#issuecomment-226784081","issue_url":"https://api.github.com/repos/biorack/metatlas/issues/64","id":226784081,"user":{"login":"benbowen","id":810953,"avatar_url":"https://avatars.githubusercontent.com/u/810953?v=3","gravatar_id":"","url":"https://api.github.com/users/benbowen","html_url":"https://github.com/benbowen","followers_url":"https://api.github.com/users/benbowen/followers","following_url":"https://api.github.com/users/benbowen/following{/other_user}","gists_url":"https://api.github.com/users/benbowen/gists{/gist_id}","starred_url":"https://api.github.com/users/benbowen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/benbowen/subscriptions","organizations_url":"https://api.github.com/users/benbowen/orgs","repos_url":"https://api.github.com/users/benbowen/repos","events_url":"https://api.github.com/users/benbowen/events{/privacy}","received_events_url":"https://api.github.com/users/benbowen/received_events","type":"User","site_admin":false},"created_at":"2016-06-17T14:29:11Z","updated_at":"2016-06-17T14:29:11Z","body":"I'm taking this task over.  There is an inconsistency for the nersc environment vs @aitatanit's environment.  So far fixed:\r\n1) Made workign notebook in docs/example_notebooks\r\n2) Made pickle file selector that works at NERSC\r\n3) Moved the qgrid into the same code cell at matplotlib and widgets\r\n4) Numerous typos\r\n\r\nBig todo: Currently, compounds are matched between Atlas and pickle by compound.name.  This doesn't work because often there are multiple identifications for the same compound (adducts and uncertain isomers or elution times). Will fix by using unique ids from the compound entry in the pickle and the atlas.\r\n\r\n"}}
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