{"action":"opened","issue":{"url":"https://api.github.com/repos/JTFouquier/biogps_dataset/issues/1","repository_url":"https://api.github.com/repos/JTFouquier/biogps_dataset","labels_url":"https://api.github.com/repos/JTFouquier/biogps_dataset/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/JTFouquier/biogps_dataset/issues/1/comments","events_url":"https://api.github.com/repos/JTFouquier/biogps_dataset/issues/1/events","html_url":"https://github.com/JTFouquier/biogps_dataset/issues/1","id":153350887,"number":1,"title":"loading error for \"E-GEOD-49355\"","user":{"login":"JTFouquier","id":7920357,"avatar_url":"https://avatars.githubusercontent.com/u/7920357?v=3","gravatar_id":"","url":"https://api.github.com/users/JTFouquier","html_url":"https://github.com/JTFouquier","followers_url":"https://api.github.com/users/JTFouquier/followers","following_url":"https://api.github.com/users/JTFouquier/following{/other_user}","gists_url":"https://api.github.com/users/JTFouquier/gists{/gist_id}","starred_url":"https://api.github.com/users/JTFouquier/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JTFouquier/subscriptions","organizations_url":"https://api.github.com/users/JTFouquier/orgs","repos_url":"https://api.github.com/users/JTFouquier/repos","events_url":"https://api.github.com/users/JTFouquier/events{/privacy}","received_events_url":"https://api.github.com/users/JTFouquier/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-05-05T23:48:38Z","updated_at":"2016-05-05T23:48:38Z","closed_at":null,"body":"\n```\n#!python\n\n[INFO, L:74] -process experiment E-GEOD-49355-\n[INFO, L:155] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt\n[INFO, L:169] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/arrays.txt\n[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.hyb.sdrf.txt\n[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.seq.sdrf.txt\n[INFO, L:219] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/E-GEOD-49355\n[INFO, L:232] get sample file: http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-49355/E-GEOD-49355.processed.1.zip\nTraceback (most recent call last):\n  File \"manage.py\", line 10, in <module>\n    execute_from_command_line(sys.argv)\n  File \"/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py\", line 399, in execute_from_command_line\n    utility.execute()\n  File \"/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py\", line 392, in execute\n    self.fetch_command(subcommand).run_from_argv(self.argv)\n  File \"/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py\", line 242, in run_from_argv\n    self.execute(*args, **options.__dict__)\n  File \"/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py\", line 285, in execute\n    output = self.handle(*args, **options)\n  File \"/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py\", line 84, in handle\n    data_matrix = setup_dataset(e)\n  File \"/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py\", line 271, in setup_dataset\n    raise Exception, 'file format wrong, check columns of file:%s'%(path+'/'+f)\nException: file format wrong, check columns of file:tmp/unzip_sample/E-GEOD-49355/GSM1197996_sample_table.txt\n\n```\n\n----------------------------------------\n- Bitbucket: https://bitbucket.org/sulab/biogps_dataset/issue/1\n- Originally reported by: [Chunlei Wu](http://bitbucket.org/newgene)\n- Originally created at: 2014-03-18T02:20:05.386\n"}}