{"action":"created","issue":{"url":"https://api.github.com/repos/rajarshi/cdkr/issues/37","repository_url":"https://api.github.com/repos/rajarshi/cdkr","labels_url":"https://api.github.com/repos/rajarshi/cdkr/issues/37/labels{/name}","comments_url":"https://api.github.com/repos/rajarshi/cdkr/issues/37/comments","events_url":"https://api.github.com/repos/rajarshi/cdkr/issues/37/events","html_url":"https://github.com/rajarshi/cdkr/issues/37","id":189330012,"number":37,"title":"Segfault when loading rcdk","user":{"login":"EDiLD","id":849616,"avatar_url":"https://avatars.githubusercontent.com/u/849616?v=3","gravatar_id":"","url":"https://api.github.com/users/EDiLD","html_url":"https://github.com/EDiLD","followers_url":"https://api.github.com/users/EDiLD/followers","following_url":"https://api.github.com/users/EDiLD/following{/other_user}","gists_url":"https://api.github.com/users/EDiLD/gists{/gist_id}","starred_url":"https://api.github.com/users/EDiLD/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/EDiLD/subscriptions","organizations_url":"https://api.github.com/users/EDiLD/orgs","repos_url":"https://api.github.com/users/EDiLD/repos","events_url":"https://api.github.com/users/EDiLD/events{/privacy}","received_events_url":"https://api.github.com/users/EDiLD/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-11-15T08:36:37Z","updated_at":"2016-11-18T20:15:13Z","closed_at":null,"body":"Using r-devel version I get a segfault when loading rcdk.\r\nSee also the [CRAN checks](https://cran.r-project.org/web/checks/check_results_rcdk.html).\r\n\r\n```r\r\nsessionInfo()\r\nR Under development (unstable) (2016-11-14 r71659)\r\nPlatform: x86_64-pc-linux-gnu (64-bit)\r\nRunning under: Ubuntu 16.04.1 LTS\r\n\r\nlocale:\r\n [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              \r\n [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8    \r\n [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8   \r\n [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                 \r\n [9] LC_ADDRESS=C               LC_TELEPHONE=C            \r\n[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       \r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices datasets  utils     methods   base     \r\n\r\nother attached packages:\r\n[1] clisymbols_1.0.0 prompt_1.0.0     gitty_1.0.0     \r\n\r\nloaded via a namespace (and not attached):\r\n[1] compiler_3.4.0 parr_3.3.0     whisker_0.3-2  crayon_1.3.2   memuse_3.0-1 \r\n```\r\n\r\nNote, that there are no problems under current R:\r\n```R\r\n❯ library(rcdk)\r\nLoading required package: fingerprint\r\n\r\n❯ sessionInfo()\r\nR version 3.3.2 (2016-10-31)\r\nPlatform: x86_64-pc-linux-gnu (64-bit)\r\nRunning under: Ubuntu 16.04.1 LTS\r\n\r\nlocale:\r\n [1] LC_CTYPE=en_US.UTF-8          LC_NUMERIC=C                 \r\n [3] LC_TIME=de_DE.UTF-8           LC_COLLATE=en_US.UTF-8       \r\n [5] LC_MONETARY=de_DE.UTF-8       LC_MESSAGES=en_US.UTF-8      \r\n [7] LC_PAPER=de_DE.UTF-8          LC_NAME=de_DE.UTF-8          \r\n [9] LC_ADDRESS=de_DE.UTF-8        LC_TELEPHONE=de_DE.UTF-8     \r\n[11] LC_MEASUREMENT=de_DE.UTF-8    LC_IDENTIFICATION=de_DE.UTF-8\r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices datasets  utils     methods   base     \r\n\r\nother attached packages:\r\n[1] rcdk_3.3.6        fingerprint_3.5.4 clisymbols_1.0.0  prompt_1.0.0     \r\n[5] gitty_1.0.0      \r\n\r\nloaded via a namespace (and not attached):\r\n [1] parr_3.3.0      parallel_3.3.2  whisker_0.3-2   crayon_1.3.2   \r\n [5] rcdklibs_1.5.13 memuse_3.0-1    iterators_1.0.8 itertools_0.1-3\r\n [9] rJava_0.9-8     png_0.1-7      \r\n```\r\n\r\n\r\nI don't see this, when running on [Travis-CI](https://travis-ci.org/ropensci/webchem/builds/175777269), which runs R-devel on Ubuntu 12.04 LTS.\r\nMaybe it something with my installation... Investigating...\r\nMaybe a different jdk version \r\nopenjdk version \"1.8.0_111\"\r\nvs\r\noraclejdk8\r\n\r\nNope. Segfault also with oracle.\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/rajarshi/cdkr/issues/comments/261630887","html_url":"https://github.com/rajarshi/cdkr/issues/37#issuecomment-261630887","issue_url":"https://api.github.com/repos/rajarshi/cdkr/issues/37","id":261630887,"user":{"login":"EDiLD","id":849616,"avatar_url":"https://avatars.githubusercontent.com/u/849616?v=3","gravatar_id":"","url":"https://api.github.com/users/EDiLD","html_url":"https://github.com/EDiLD","followers_url":"https://api.github.com/users/EDiLD/followers","following_url":"https://api.github.com/users/EDiLD/following{/other_user}","gists_url":"https://api.github.com/users/EDiLD/gists{/gist_id}","starred_url":"https://api.github.com/users/EDiLD/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/EDiLD/subscriptions","organizations_url":"https://api.github.com/users/EDiLD/orgs","repos_url":"https://api.github.com/users/EDiLD/repos","events_url":"https://api.github.com/users/EDiLD/events{/privacy}","received_events_url":"https://api.github.com/users/EDiLD/received_events","type":"User","site_admin":false},"created_at":"2016-11-18T20:15:13Z","updated_at":"2016-11-18T20:15:13Z","body":"Problems arises from `.jinit` used in .onLoad. Checking rJava now."}}
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