{"action":"created","comment":{"url":"https://api.github.com/repos/prody/ProDy/pulls/comments/62765388","id":62765388,"diff_hunk":"@@ -162,6 +162,10 @@ def parsePDBStream(stream, **kwargs):\n     elif model != 0:\n         ag = AtomGroup(str(kwargs.get('title', 'Unknown')) + title_suffix)\n         n_csets = 0\n+    if \"needfullname\" in kwargs:","path":"prody/proteins/pdbfile.py","position":4,"original_position":4,"commit_id":"a011aa489d14322f6cd27c9c19ce2dd53e708c98","original_commit_id":"a011aa489d14322f6cd27c9c19ce2dd53e708c98","user":{"login":"SHZ66","id":8532098,"avatar_url":"https://avatars.githubusercontent.com/u/8532098?v=3","gravatar_id":"","url":"https://api.github.com/users/SHZ66","html_url":"https://github.com/SHZ66","followers_url":"https://api.github.com/users/SHZ66/followers","following_url":"https://api.github.com/users/SHZ66/following{/other_user}","gists_url":"https://api.github.com/users/SHZ66/gists{/gist_id}","starred_url":"https://api.github.com/users/SHZ66/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SHZ66/subscriptions","organizations_url":"https://api.github.com/users/SHZ66/orgs","repos_url":"https://api.github.com/users/SHZ66/repos","events_url":"https://api.github.com/users/SHZ66/events{/privacy}","received_events_url":"https://api.github.com/users/SHZ66/received_events","type":"User","site_admin":false},"body":"Hi Wenzhi,\r\n\r\nThanks for the bug fixes! Because of some check errors in the requested branch (though it could be nothing), we cannot take the risk of merging it. Therefore I am redoing all your fixes. I want to ask if you can give some explanation on what this argument is doing? A few sentences is okay. \r\n\r\nThanks,\r\nShe","created_at":"2016-05-10T22:29:15Z","updated_at":"2016-05-10T22:29:15Z","html_url":"https://github.com/prody/ProDy/pull/263#discussion_r62765388","pull_request_url":"https://api.github.com/repos/prody/ProDy/pulls/263","_links":{"self":{"href":"https://api.github.com/repos/prody/ProDy/pulls/comments/62765388"},"html":{"href":"https://github.com/prody/ProDy/pull/263#discussion_r62765388"},"pull_request":{"href":"https://api.github.com/repos/prody/ProDy/pulls/263"}}},"pull_request":{"url":"https://api.github.com/repos/prody/ProDy/pulls/263","id":50246186,"html_url":"https://github.com/prody/ProDy/pull/263","diff_url":"https://github.com/prody/ProDy/pull/263.diff","patch_url":"https://github.com/prody/ProDy/pull/263.patch","issue_url":"https://api.github.com/repos/prody/ProDy/issues/263","number":263,"state":"open","locked":false,"title":"Some bugs","user":{"login":"wzmao","id":7339382,"avatar_url":"https://avatars.githubusercontent.com/u/7339382?v=3","gravatar_id":"","url":"https://api.github.com/users/wzmao","html_url":"https://github.com/wzmao","followers_url":"https://api.github.com/users/wzmao/followers","following_url":"https://api.github.com/users/wzmao/following{/other_user}","gists_url":"https://api.github.com/users/wzmao/gists{/gist_id}","starred_url":"https://api.github.com/users/wzmao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wzmao/subscriptions","organizations_url":"https://api.github.com/users/wzmao/orgs","repos_url":"https://api.github.com/users/wzmao/repos","events_url":"https://api.github.com/users/wzmao/events{/privacy}","received_events_url":"https://api.github.com/users/wzmao/received_events","type":"User","site_admin":false},"body":"* Fix `fetchPfamMSA` url problem.\r\n* Fix kdtree warning information.\r\n* Add 2 warning for DI and SCA calculation.\r\n* Fix the `showDirectInfoMatrix` bug.","created_at":"2015-11-10T12:09:32Z","updated_at":"2016-05-10T22:29:15Z","closed_at":null,"merged_at":null,"merge_commit_sha":"6470b66a0f8d5a6d24fe13d163280989fc6b7dfe","assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/prody/ProDy/pulls/263/commits","review_comments_url":"https://api.github.com/repos/prody/ProDy/pulls/263/comments","review_comment_url":"https://api.github.com/repos/prody/ProDy/pulls/comments{/number}","comments_url":"https://api.github.com/repos/prody/ProDy/issues/263/comments","statuses_url":"https://api.github.com/repos/prody/ProDy/statuses/a011aa489d14322f6cd27c9c19ce2dd53e708c98","head":{"label":"wzmao:master","ref":"master","sha":"a011aa489d14322f6cd27c9c19ce2dd53e708c98","user":{"login":"wzmao","id":7339382,"avatar_url":"https://avatars.githubusercontent.com/u/7339382?v=3","gravatar_id":"","url":"https://api.github.com/users/wzmao","html_url":"https://github.com/wzmao","followers_url":"https://api.github.com/users/wzmao/followers","following_url":"https://api.github.com/users/wzmao/following{/other_user}","gists_url":"https://api.github.com/users/wzmao/gists{/gist_id}","starred_url":"https://api.github.com/users/wzmao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wzmao/subscriptions","organizations_url":"https://api.github.com/users/wzmao/orgs","repos_url":"https://api.github.com/users/wzmao/repos","events_url":"https://api.github.com/users/wzmao/events{/privacy}","received_events_url":"https://api.github.com/users/wzmao/received_events","type":"User","site_admin":false},"repo":{"id":18919454,"name":"ProDy","full_name":"wzmao/ProDy","owner":{"login":"wzmao","id":7339382,"avatar_url":"https://avatars.githubusercontent.com/u/7339382?v=3","gravatar_id":"","url":"https://api.github.com/users/wzmao","html_url":"https://github.com/wzmao","followers_url":"https://api.github.com/users/wzmao/followers","following_url":"https://api.github.com/users/wzmao/following{/other_user}","gists_url":"https://api.github.com/users/wzmao/gists{/gist_id}","starred_url":"https://api.github.com/users/wzmao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wzmao/subscriptions","organizations_url":"https://api.github.com/users/wzmao/orgs","repos_url":"https://api.github.com/users/wzmao/repos","events_url":"https://api.github.com/users/wzmao/events{/privacy}","received_events_url":"https://api.github.com/users/wzmao/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/wzmao/ProDy","description":"A Python Package for Protein Dynamics Analysis","fork":true,"url":"https://api.github.com/repos/wzmao/ProDy","forks_url":"https://api.github.com/repos/wzmao/ProDy/forks","keys_url":"https://api.github.com/repos/wzmao/ProDy/keys{/key_id}","collaborators_url":"https://api.github.com/repos/wzmao/ProDy/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/wzmao/ProDy/teams","hooks_url":"https://api.github.com/repos/wzmao/ProDy/hooks","issue_events_url":"https://api.github.com/repos/wzmao/ProDy/issues/events{/number}","events_url":"https://api.github.com/repos/wzmao/ProDy/events","assignees_url":"https://api.github.com/repos/wzmao/ProDy/assignees{/user}","branches_url":"https://api.github.com/repos/wzmao/ProDy/branches{/branch}","tags_url":"https://api.github.com/repos/wzmao/ProDy/tags","blobs_url":"https://api.github.com/repos/wzmao/ProDy/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/wzmao/ProDy/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/wzmao/ProDy/git/refs{/sha}","trees_url":"https://api.github.com/repos/wzmao/ProDy/git/trees{/sha}","statuses_url":"https://api.github.com/repos/wzmao/ProDy/statuses/{sha}","languages_url":"https://api.github.com/repos/wzmao/ProDy/languages","stargazers_url":"https://api.github.com/repos/wzmao/ProDy/stargazers","contributors_url":"https://api.github.com/repos/wzmao/ProDy/contributors","subscribers_url":"https://api.github.com/repos/wzmao/ProDy/subscribers","subscription_url":"https://api.github.com/repos/wzmao/ProDy/subscription","commits_url":"https://api.github.com/repos/wzmao/ProDy/commits{/sha}","git_commits_url":"https://api.github.com/repos/wzmao/ProDy/git/commits{/sha}","comments_url":"https://api.github.com/repos/wzmao/ProDy/comments{/number}","issue_comment_url":"https://api.github.com/repos/wzmao/ProDy/issues/comments{/number}","contents_url":"https://api.github.com/repos/wzmao/ProDy/contents/{+path}","compare_url":"https://api.github.com/repos/wzmao/ProDy/compare/{base}...{head}","merges_url":"https://api.github.com/repos/wzmao/ProDy/merges","archive_url":"https://api.github.com/repos/wzmao/ProDy/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/wzmao/ProDy/downloads","issues_url":"https://api.github.com/repos/wzmao/ProDy/issues{/number}","pulls_url":"https://api.github.com/repos/wzmao/ProDy/pulls{/number}","milestones_url":"https://api.github.com/repos/wzmao/ProDy/milestones{/number}","notifications_url":"https://api.github.com/repos/wzmao/ProDy/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/wzmao/ProDy/labels{/name}","releases_url":"https://api.github.com/repos/wzmao/ProDy/releases{/id}","deployments_url":"https://api.github.com/repos/wzmao/ProDy/deployments","created_at":"2014-04-18T17:05:44Z","updated_at":"2016-02-15T09:16:25Z","pushed_at":"2016-02-16T10:35:49Z","git_url":"git://github.com/wzmao/ProDy.git","ssh_url":"git@github.com:wzmao/ProDy.git","clone_url":"https://github.com/wzmao/ProDy.git","svn_url":"https://github.com/wzmao/ProDy","homepage":"http://prody.csb.pitt.edu","size":41547,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"prody:master","ref":"master","sha":"9805d85a7062249336aee779d42f40248ee552dc","user":{"login":"prody","id":1813049,"avatar_url":"https://avatars.githubusercontent.com/u/1813049?v=3","gravatar_id":"","url":"https://api.github.com/users/prody","html_url":"https://github.com/prody","followers_url":"https://api.github.com/users/prody/followers","following_url":"https://api.github.com/users/prody/following{/other_user}","gists_url":"https://api.github.com/users/prody/gists{/gist_id}","starred_url":"https://api.github.com/users/prody/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/prody/subscriptions","organizations_url":"https://api.github.com/users/prody/orgs","repos_url":"https://api.github.com/users/prody/repos","events_url":"https://api.github.com/users/prody/events{/privacy}","received_events_url":"https://api.github.com/users/prody/received_events","type":"Organization","site_admin":false},"repo":{"id":1039662,"name":"ProDy","full_name":"prody/ProDy","owner":{"login":"prody","id":1813049,"avatar_url":"https://avatars.githubusercontent.com/u/1813049?v=3","gravatar_id":"","url":"https://api.github.com/users/prody","html_url":"https://github.com/prody","followers_url":"https://api.github.com/users/prody/followers","following_url":"https://api.github.com/users/prody/following{/other_user}","gists_url":"https://api.github.com/users/prody/gists{/gist_id}","starred_url":"https://api.github.com/users/prody/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/prody/subscriptions","organizations_url":"https://api.github.com/users/prody/orgs","repos_url":"https://api.github.com/users/prody/repos","events_url":"https://api.github.com/users/prody/events{/privacy}","received_events_url":"https://api.github.com/users/prody/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/prody/ProDy","description":"A Python Package for Protein Dynamics Analysis","fork":false,"url":"https://api.github.com/repos/prody/ProDy","forks_url":"https://api.github.com/repos/prody/ProDy/forks","keys_url":"https://api.github.com/repos/prody/ProDy/keys{/key_id}","collaborators_url":"https://api.github.com/repos/prody/ProDy/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/prody/ProDy/teams","hooks_url":"https://api.github.com/repos/prody/ProDy/hooks","issue_events_url":"https://api.github.com/repos/prody/ProDy/issues/events{/number}","events_url":"https://api.github.com/repos/prody/ProDy/events","assignees_url":"https://api.github.com/repos/prody/ProDy/assignees{/user}","branches_url":"https://api.github.com/repos/prody/ProDy/branches{/branch}","tags_url":"https://api.github.com/repos/prody/ProDy/tags","blobs_url":"https://api.github.com/repos/prody/ProDy/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/prody/ProDy/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/prody/ProDy/git/refs{/sha}","trees_url":"https://api.github.com/repos/prody/ProDy/git/trees{/sha}","statuses_url":"https://api.github.com/repos/prody/ProDy/statuses/{sha}","languages_url":"https://api.github.com/repos/prody/ProDy/languages","stargazers_url":"https://api.github.com/repos/prody/ProDy/stargazers","contributors_url":"https://api.github.com/repos/prody/ProDy/contributors","subscribers_url":"https://api.github.com/repos/prody/ProDy/subscribers","subscription_url":"https://api.github.com/repos/prody/ProDy/subscription","commits_url":"https://api.github.com/repos/prody/ProDy/commits{/sha}","git_commits_url":"https://api.github.com/repos/prody/ProDy/git/commits{/sha}","comments_url":"https://api.github.com/repos/prody/ProDy/comments{/number}","issue_comment_url":"https://api.github.com/repos/prody/ProDy/issues/comments{/number}","contents_url":"https://api.github.com/repos/prody/ProDy/contents/{+path}","compare_url":"https://api.github.com/repos/prody/ProDy/compare/{base}...{head}","merges_url":"https://api.github.com/repos/prody/ProDy/merges","archive_url":"https://api.github.com/repos/prody/ProDy/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/prody/ProDy/downloads","issues_url":"https://api.github.com/repos/prody/ProDy/issues{/number}","pulls_url":"https://api.github.com/repos/prody/ProDy/pulls{/number}","milestones_url":"https://api.github.com/repos/prody/ProDy/milestones{/number}","notifications_url":"https://api.github.com/repos/prody/ProDy/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/prody/ProDy/labels{/name}","releases_url":"https://api.github.com/repos/prody/ProDy/releases{/id}","deployments_url":"https://api.github.com/repos/prody/ProDy/deployments","created_at":"2010-10-31T15:57:43Z","updated_at":"2016-04-27T04:42:14Z","pushed_at":"2016-05-10T04:08:35Z","git_url":"git://github.com/prody/ProDy.git","ssh_url":"git@github.com:prody/ProDy.git","clone_url":"https://github.com/prody/ProDy.git","svn_url":"https://github.com/prody/ProDy","homepage":"http://prody.csb.pitt.edu","size":41772,"stargazers_count":61,"watchers_count":61,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":41,"mirror_url":null,"open_issues_count":65,"forks":41,"open_issues":65,"watchers":61,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/prody/ProDy/pulls/263"},"html":{"href":"https://github.com/prody/ProDy/pull/263"},"issue":{"href":"https://api.github.com/repos/prody/ProDy/issues/263"},"comments":{"href":"https://api.github.com/repos/prody/ProDy/issues/263/comments"},"review_comments":{"href":"https://api.github.com/repos/prody/ProDy/pulls/263/comments"},"review_comment":{"href":"https://api.github.com/repos/prody/ProDy/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/prody/ProDy/pulls/263/commits"},"statuses":{"href":"https://api.github.com/repos/prody/ProDy/statuses/a011aa489d14322f6cd27c9c19ce2dd53e708c98"}}}}