{"action":"created","issue":{"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/15","repository_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq","labels_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/15/comments","events_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/15/events","html_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/15","id":158138221,"number":15,"title":"Adding error recovery and automatic resource management","user":{"login":"Hammarn","id":16774076,"avatar_url":"https://avatars.githubusercontent.com/u/16774076?v=3","gravatar_id":"","url":"https://api.github.com/users/Hammarn","html_url":"https://github.com/Hammarn","followers_url":"https://api.github.com/users/Hammarn/followers","following_url":"https://api.github.com/users/Hammarn/following{/other_user}","gists_url":"https://api.github.com/users/Hammarn/gists{/gist_id}","starred_url":"https://api.github.com/users/Hammarn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Hammarn/subscriptions","organizations_url":"https://api.github.com/users/Hammarn/orgs","repos_url":"https://api.github.com/users/Hammarn/repos","events_url":"https://api.github.com/users/Hammarn/events{/privacy}","received_events_url":"https://api.github.com/users/Hammarn/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-06-02T13:17:03Z","updated_at":"2016-06-08T07:21:49Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/pulls/15","html_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/15","diff_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/15.diff","patch_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/15.patch"},"body":"\r\nIf a process fails  due to time limit or lack of memory (error code ==140) it will now request double the time and memory.\r\nI also increased the standard time for  the rseqc process since too many of my runs where hitting the time cap. \r\n\r\nWe talked about replacing\r\n```\r\n    file '*.inner_distance.{txt,pdf}' into results              // inner_distance\r\n     file '*.curves.{txt,pdf}' into results                      // geneBody_coverage\r\n     file '*.geneBodyCoverage.txt' into results\r\n     file '*.heatMap.{txt,pdf}' into results                     // geneBody_coverage\r\n     file '*.infer_experiment.txt' into results                  // infer_experiment\r\n     file '*.read_distribution.txt' into results                 // read_distribution\r\n     file '*DupRate.xls' into results    \r\n```\r\nWith just `*.{txt,pdf}` and adding the above list as a comment or something simliar. This because the .heatMap.pdf file is only generated when there are three or more samples. With the current setup this would generate a warning/crash or make the process request more and more time and memory..\r\n"},"comment":{"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/comments/224509658","html_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/15#issuecomment-224509658","issue_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/15","id":224509658,"user":{"login":"ewels","id":465550,"avatar_url":"https://avatars.githubusercontent.com/u/465550?v=3","gravatar_id":"","url":"https://api.github.com/users/ewels","html_url":"https://github.com/ewels","followers_url":"https://api.github.com/users/ewels/followers","following_url":"https://api.github.com/users/ewels/following{/other_user}","gists_url":"https://api.github.com/users/ewels/gists{/gist_id}","starred_url":"https://api.github.com/users/ewels/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ewels/subscriptions","organizations_url":"https://api.github.com/users/ewels/orgs","repos_url":"https://api.github.com/users/ewels/repos","events_url":"https://api.github.com/users/ewels/events{/privacy}","received_events_url":"https://api.github.com/users/ewels/received_events","type":"User","site_admin":false},"created_at":"2016-06-08T07:21:48Z","updated_at":"2016-06-08T07:21:48Z","body":"@Hammarn - anything else to go into this or should I merge? Looks good!"}}
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