{"action":"created","issue":{"url":"https://api.github.com/repos/knights-lab/shi7en/issues/11","repository_url":"https://api.github.com/repos/knights-lab/shi7en","labels_url":"https://api.github.com/repos/knights-lab/shi7en/issues/11/labels{/name}","comments_url":"https://api.github.com/repos/knights-lab/shi7en/issues/11/comments","events_url":"https://api.github.com/repos/knights-lab/shi7en/issues/11/events","html_url":"https://github.com/knights-lab/shi7en/issues/11","id":190361036,"number":11,"title":"Add 'split_libraries' to the pipeline","user":{"login":"bhillmann","id":4602378,"avatar_url":"https://avatars.githubusercontent.com/u/4602378?v=3","gravatar_id":"","url":"https://api.github.com/users/bhillmann","html_url":"https://github.com/bhillmann","followers_url":"https://api.github.com/users/bhillmann/followers","following_url":"https://api.github.com/users/bhillmann/following{/other_user}","gists_url":"https://api.github.com/users/bhillmann/gists{/gist_id}","starred_url":"https://api.github.com/users/bhillmann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bhillmann/subscriptions","organizations_url":"https://api.github.com/users/bhillmann/orgs","repos_url":"https://api.github.com/users/bhillmann/repos","events_url":"https://api.github.com/users/bhillmann/events{/privacy}","received_events_url":"https://api.github.com/users/bhillmann/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"GabeAl","id":8050438,"avatar_url":"https://avatars.githubusercontent.com/u/8050438?v=3","gravatar_id":"","url":"https://api.github.com/users/GabeAl","html_url":"https://github.com/GabeAl","followers_url":"https://api.github.com/users/GabeAl/followers","following_url":"https://api.github.com/users/GabeAl/following{/other_user}","gists_url":"https://api.github.com/users/GabeAl/gists{/gist_id}","starred_url":"https://api.github.com/users/GabeAl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/GabeAl/subscriptions","organizations_url":"https://api.github.com/users/GabeAl/orgs","repos_url":"https://api.github.com/users/GabeAl/repos","events_url":"https://api.github.com/users/GabeAl/events{/privacy}","received_events_url":"https://api.github.com/users/GabeAl/received_events","type":"User","site_admin":false},"assignees":[{"login":"GabeAl","id":8050438,"avatar_url":"https://avatars.githubusercontent.com/u/8050438?v=3","gravatar_id":"","url":"https://api.github.com/users/GabeAl","html_url":"https://github.com/GabeAl","followers_url":"https://api.github.com/users/GabeAl/followers","following_url":"https://api.github.com/users/GabeAl/following{/other_user}","gists_url":"https://api.github.com/users/GabeAl/gists{/gist_id}","starred_url":"https://api.github.com/users/GabeAl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/GabeAl/subscriptions","organizations_url":"https://api.github.com/users/GabeAl/orgs","repos_url":"https://api.github.com/users/GabeAl/repos","events_url":"https://api.github.com/users/GabeAl/events{/privacy}","received_events_url":"https://api.github.com/users/GabeAl/received_events","type":"User","site_admin":false},{"login":"kaiweiang","id":17019467,"avatar_url":"https://avatars.githubusercontent.com/u/17019467?v=3","gravatar_id":"","url":"https://api.github.com/users/kaiweiang","html_url":"https://github.com/kaiweiang","followers_url":"https://api.github.com/users/kaiweiang/followers","following_url":"https://api.github.com/users/kaiweiang/following{/other_user}","gists_url":"https://api.github.com/users/kaiweiang/gists{/gist_id}","starred_url":"https://api.github.com/users/kaiweiang/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kaiweiang/subscriptions","organizations_url":"https://api.github.com/users/kaiweiang/orgs","repos_url":"https://api.github.com/users/kaiweiang/repos","events_url":"https://api.github.com/users/kaiweiang/events{/privacy}","received_events_url":"https://api.github.com/users/kaiweiang/received_events","type":"User","site_admin":false}],"milestone":null,"comments":5,"created_at":"2016-11-18T16:26:28Z","updated_at":"2016-12-02T16:14:05Z","closed_at":null,"body":"This is similar to the QIIME [split_libraries_fastq.py](http://qiime.org/scripts/split_libraries_fastq.html)\r\n\r\nThis source is included [here ](https://github.com/GabeAl/NINJA-SHI7/blob/master/others/gotta_split.c).\r\n\r\nThis should be the first step in the pipeline. It should default to False. User must provide TXT file of oligos. Should be a command line argument. Will split combined FASTQ file into individual FASTQs per sample."},"comment":{"url":"https://api.github.com/repos/knights-lab/shi7en/issues/comments/264492502","html_url":"https://github.com/knights-lab/shi7en/issues/11#issuecomment-264492502","issue_url":"https://api.github.com/repos/knights-lab/shi7en/issues/11","id":264492502,"user":{"login":"bhillmann","id":4602378,"avatar_url":"https://avatars.githubusercontent.com/u/4602378?v=3","gravatar_id":"","url":"https://api.github.com/users/bhillmann","html_url":"https://github.com/bhillmann","followers_url":"https://api.github.com/users/bhillmann/followers","following_url":"https://api.github.com/users/bhillmann/following{/other_user}","gists_url":"https://api.github.com/users/bhillmann/gists{/gist_id}","starred_url":"https://api.github.com/users/bhillmann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bhillmann/subscriptions","organizations_url":"https://api.github.com/users/bhillmann/orgs","repos_url":"https://api.github.com/users/bhillmann/repos","events_url":"https://api.github.com/users/bhillmann/events{/privacy}","received_events_url":"https://api.github.com/users/bhillmann/received_events","type":"User","site_admin":false},"created_at":"2016-12-02T16:14:05Z","updated_at":"2016-12-02T16:14:05Z","body":"@GabeAl \r\n\r\nCan you verify that we can specify an output folder with the:\r\n\r\n```\r\ngotta_spli7 -i <input_fastq> -o <output_fastq>\r\n```"}}
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