{"action":"opened","issue":{"url":"https://api.github.com/repos/PacificBiosciences/blasr/issues/299","repository_url":"https://api.github.com/repos/PacificBiosciences/blasr","labels_url":"https://api.github.com/repos/PacificBiosciences/blasr/issues/299/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/blasr/issues/299/comments","events_url":"https://api.github.com/repos/PacificBiosciences/blasr/issues/299/events","html_url":"https://github.com/PacificBiosciences/blasr/issues/299","id":187333832,"number":299,"title":"make blasr error","user":{"login":"LeoChanW","id":8362870,"avatar_url":"https://avatars.githubusercontent.com/u/8362870?v=3","gravatar_id":"","url":"https://api.github.com/users/LeoChanW","html_url":"https://github.com/LeoChanW","followers_url":"https://api.github.com/users/LeoChanW/followers","following_url":"https://api.github.com/users/LeoChanW/following{/other_user}","gists_url":"https://api.github.com/users/LeoChanW/gists{/gist_id}","starred_url":"https://api.github.com/users/LeoChanW/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeoChanW/subscriptions","organizations_url":"https://api.github.com/users/LeoChanW/orgs","repos_url":"https://api.github.com/users/LeoChanW/repos","events_url":"https://api.github.com/users/LeoChanW/events{/privacy}","received_events_url":"https://api.github.com/users/LeoChanW/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-11-04T13:31:57Z","updated_at":"2016-11-04T13:31:57Z","closed_at":null,"body":"HI  \r\nwhen I make blasr，it have some trouble.\r\nI install  blasr by\" Step by step blasr installation example\"\r\nleochan@ubuntu:~/software/blasr_install/blasr$ make blasr\r\ng++ -O3 -g -DSHA1_7=\\\"8c16f52\\\" -std=c++0x -pedantic -Wall -Wextra -Wno-div-by-zero -Wno-overloaded-virtual -MMD -MP -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -fno-omit-frame-pointer  -I/home/leochan/software/blasr_install/blasr/libcpp/alignment -I/home/leochan/software/blasr_install/blasr/libcpp/hdf -I/home/leochan/software/blasr_install/blasr/libcpp/pbdata -I/home/leochan/software/blasr_install/hdf5/hdf5-1.8.16-linux-centos6-x86_64-gcc447-shared/include/  -c -o Blasr.o Blasr.cpp\r\ng++ -o blasr -O3 -g -DSHA1_7=\\\"8c16f52\\\" -std=c++0x -pedantic -Wall -Wextra -Wno-div-by-zero -Wno-overloaded-virtual -MMD -MP -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -fno-omit-frame-pointer  -I/home/leochan/software/blasr_install/blasr/libcpp/alignment -I/home/leochan/software/blasr_install/blasr/libcpp/hdf -I/home/leochan/software/blasr_install/blasr/libcpp/pbdata -I/home/leochan/software/blasr_install/hdf5/hdf5-1.8.16-linux-centos6-x86_64-gcc447-shared/include/ -MF\"blasr.d\" Blasr.o -L/home/leochan/software/blasr_install/blasr/libcpp/alignment -L/home/leochan/software/blasr_install/blasr/libcpp/hdf -L/home/leochan/software/blasr_install/blasr/libcpp/pbdata -L/home/leochan/software/blasr_install/hdf5/hdf5-1.8.16-linux-centos6-x86_64-gcc447-shared/lib -lpbihdf -lblasr -lpbihdf -lpbdata  -lhdf5_cpp -lhdf5   -lz -lrt -lpthread -ldl\r\n/home/leochan/software/blasr_install/blasr/libcpp/hdf/libpbihdf.so: undefined reference to `H5::H5Location::iterateAttrs(void (*)(H5::H5Location&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, void*), unsigned int*, void*)'\r\n/home/leochan/software/blasr_install/blasr/libcpp/hdf/libpbihdf.so: undefined reference to `H5::CommonFG::createGroup(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long) const'\r\n/home/leochan/software/blasr_install/blasr/libcpp/hdf/libpbihdf.so: undefined reference to `H5::CommonFG::getObjnameByIdx[abi:cxx11](unsigned long long) const'\r\n/home/leochan/software/blasr_install/blasr/libcpp/hdf/libpbihdf.so: undefined reference to `H5::Attribute::write(H5::DataType const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'\r\n/home/leochan/software/blasr_install/blasr/libcpp/hdf/libpbihdf.so: undefined reference to `H5::Attribute::read(H5::DataType const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&) const'\r\n/home/leochan/software/blasr_install/blasr/libcpp/hdf/libpbihdf.so: undefined reference to `H5::Exception::getDetailMsg[abi:cxx11]() const'\r\ncollect2: error: ld returned 1 exit status\r\nmakefile:63: recipe for target 'blasr' failed\r\nmake: *** [blasr] Error 1\r\n\r\nI need some help to solve it.\r\nThanks .\r\n"}}
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