{"action":"opened","issue":{"url":"https://api.github.com/repos/dentearl/mafTools/issues/13","repository_url":"https://api.github.com/repos/dentearl/mafTools","labels_url":"https://api.github.com/repos/dentearl/mafTools/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/dentearl/mafTools/issues/13/comments","events_url":"https://api.github.com/repos/dentearl/mafTools/issues/13/events","html_url":"https://github.com/dentearl/mafTools/issues/13","id":149265063,"number":13,"title":"Install error on mafExtractor","user":{"login":"jwasmuth","id":7673886,"avatar_url":"https://avatars.githubusercontent.com/u/7673886?v=3","gravatar_id":"","url":"https://api.github.com/users/jwasmuth","html_url":"https://github.com/jwasmuth","followers_url":"https://api.github.com/users/jwasmuth/followers","following_url":"https://api.github.com/users/jwasmuth/following{/other_user}","gists_url":"https://api.github.com/users/jwasmuth/gists{/gist_id}","starred_url":"https://api.github.com/users/jwasmuth/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jwasmuth/subscriptions","organizations_url":"https://api.github.com/users/jwasmuth/orgs","repos_url":"https://api.github.com/users/jwasmuth/repos","events_url":"https://api.github.com/users/jwasmuth/events{/privacy}","received_events_url":"https://api.github.com/users/jwasmuth/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-04-18T20:38:18Z","updated_at":"2016-04-18T20:38:18Z","closed_at":null,"body":"Hi,\r\nI'm trying to install on ubuntu and get an error. The output is pasted below. Any help is very welcome.\r\nThanks\r\nJames\r\n\r\n> mafTools$ make\r\n> Makefile:16: Because dependency ../sonLib is missing mafComparator, mafTransitiveClosure, mafStats, mafToFastaStitcher, mafPairCoverage, mafCoverage will not be built / tested / cleaned. See README.md for information about dependencies.\r\n> cd lib && make all\r\n> make[1]: Entering directory `/home/james/install/mafTools/lib'\r\n> gcc -O3 -c -std=c99 -O3 -Wextra -Wall -Werror -pedantic -I ../external/ -I ../inc/ common.c -o common.o.tmp\r\n> mv common.o.tmp common.o\r\n> gcc -O3 -c -std=c99 -O3 -Wextra -Wall -Werror -pedantic -I ../external/ -I ../inc/ sharedMaf.c -o sharedMaf.o.tmp -lm\r\n> mv sharedMaf.o.tmp sharedMaf.o\r\n> make[1]: Leaving directory `/home/james/install/mafTools/lib'\r\n> cd mafValidator && make all\r\n> make[1]: Entering directory `/home/james/install/mafTools/mafValidator'\r\n> cp src/mafValidator.py ../bin/mafValidator.py.tmp\r\n> chmod +x ../bin/mafValidator.py.tmp\r\n> mv ../bin/mafValidator.py.tmp ../bin/mafValidator.py\r\n> make[1]: Leaving directory `/home/james/install/mafTools/mafValidator'\r\n> cd mafPositionFinder && make all\r\n> make[1]: Entering directory `/home/james/install/mafTools/mafPositionFinder'\r\n> cc    -c -o src/buildVersion.o src/buildVersion.c\r\n> mkdir -p ../bin/\r\n> gcc -std=c99 -O3 -Wall -Werror --pedantic -funroll-loops -DNDEBUG -Wshadow -Wpointer-arith -Wstrict-prototypes -Wmissing-prototypes -I ../../sonLib/lib -I ../inc -I ../external  -O3 src/mafPositionFinder.c ../lib/common.o ../lib/sharedMaf.o ../external/CuTest.a src/buildVersion.o -o ../bin/mafPositionFinder.tmp -lm\r\n> mv ../bin/mafPositionFinder.tmp ../bin/mafPositionFinder\r\n> make[1]: Leaving directory `/home/james/install/mafTools/mafPositionFinder'\r\n> cd mafExtractor && make all\r\n> make[1]: Entering directory `/home/james/install/mafTools/mafExtractor'\r\n> gcc -std=c99 -O3 -c -O3 -Wall -Werror --pedantic -funroll-loops -DNDEBUG -Wshadow -Wpointer-arith -Wstrict-prototypes -Wmissing-prototypes -I ../../sonLib/lib -I ../inc -I ../external  src/mafExtractorAPI.c -o src/mafExtractorAPI.o.tmp -lm\r\n> src/mafExtractorAPI.c: In function ‘checkBlock’:\r\n> src/mafExtractorAPI.c:423:17: error: variable ‘dummy’ set but not used [-Werror=unused-but-set-variable]\r\n>      mafBlock_t *dummy = NULL;\r\n>                  ^\r\n> cc1: all warnings being treated as errors\r\n> make[1]: *** [src/mafExtractorAPI.o] Error 1\r\n> make[1]: Leaving directory `/home/james/install/mafTools/mafExtractor'\r\n> make: *** [mafExtractor.all] Error 2\r\n"}}