{"action":"created","issue":{"url":"https://api.github.com/repos/mothur/mothur/issues/258","repository_url":"https://api.github.com/repos/mothur/mothur","labels_url":"https://api.github.com/repos/mothur/mothur/issues/258/labels{/name}","comments_url":"https://api.github.com/repos/mothur/mothur/issues/258/comments","events_url":"https://api.github.com/repos/mothur/mothur/issues/258/events","html_url":"https://github.com/mothur/mothur/issues/258","id":168721908,"number":258,"title":"align.seqs(..., align=noalign) produces .align file","user":{"login":"rec3141","id":1102883,"avatar_url":"https://avatars.githubusercontent.com/u/1102883?v=3","gravatar_id":"","url":"https://api.github.com/users/rec3141","html_url":"https://github.com/rec3141","followers_url":"https://api.github.com/users/rec3141/followers","following_url":"https://api.github.com/users/rec3141/following{/other_user}","gists_url":"https://api.github.com/users/rec3141/gists{/gist_id}","starred_url":"https://api.github.com/users/rec3141/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rec3141/subscriptions","organizations_url":"https://api.github.com/users/rec3141/orgs","repos_url":"https://api.github.com/users/rec3141/repos","events_url":"https://api.github.com/users/rec3141/events{/privacy}","received_events_url":"https://api.github.com/users/rec3141/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-08-01T19:25:15Z","updated_at":"2016-08-05T00:31:50Z","closed_at":"2016-08-04T15:32:23Z","body":"I'm not sure if this is a bug but it seems inefficient to produce an .align file that has nothing but dots, e.g. when I am searching against silva_nr"},"comment":{"url":"https://api.github.com/repos/mothur/mothur/issues/comments/237725500","html_url":"https://github.com/mothur/mothur/issues/258#issuecomment-237725500","issue_url":"https://api.github.com/repos/mothur/mothur/issues/258","id":237725500,"user":{"login":"rec3141","id":1102883,"avatar_url":"https://avatars.githubusercontent.com/u/1102883?v=3","gravatar_id":"","url":"https://api.github.com/users/rec3141","html_url":"https://github.com/rec3141","followers_url":"https://api.github.com/users/rec3141/followers","following_url":"https://api.github.com/users/rec3141/following{/other_user}","gists_url":"https://api.github.com/users/rec3141/gists{/gist_id}","starred_url":"https://api.github.com/users/rec3141/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rec3141/subscriptions","organizations_url":"https://api.github.com/users/rec3141/orgs","repos_url":"https://api.github.com/users/rec3141/repos","events_url":"https://api.github.com/users/rec3141/events{/privacy}","received_events_url":"https://api.github.com/users/rec3141/received_events","type":"User","site_admin":false},"created_at":"2016-08-05T00:31:50Z","updated_at":"2016-08-05T00:31:50Z","body":"thanks -- yes I can ignore it but if it is not needed then as a user I\nwould rather it is not produced because when I'm searching against SILVA NR\nit's 50kb x N where N can be thousands -- writing a file that big takes a\nlot of time and disk space.\n\nOn Thu, Aug 4, 2016 at 7:32 AM, Sarah Westcott <notifications@github.com>\nwrote:\n\n> Thanks for letting us know about the silent overwrite issue. You can\n> ignore the *.align file when using the align=noalign method.\n>\n> —\n> You are receiving this because you authored the thread.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/mothur/mothur/issues/258#issuecomment-237590356>, or mute\n> the thread\n> <https://github.com/notifications/unsubscribe-auth/ABDUIzwYapaJqR8XgGa0T-vobeTfuxP5ks5qcgYIgaJpZM4JZ6PX>\n> .\n>\n"}}
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