{"action":"created","issue":{"url":"https://api.github.com/repos/CancerRxGene/gdsctools/issues/147","repository_url":"https://api.github.com/repos/CancerRxGene/gdsctools","labels_url":"https://api.github.com/repos/CancerRxGene/gdsctools/issues/147/labels{/name}","comments_url":"https://api.github.com/repos/CancerRxGene/gdsctools/issues/147/comments","events_url":"https://api.github.com/repos/CancerRxGene/gdsctools/issues/147/events","html_url":"https://github.com/CancerRxGene/gdsctools/issues/147","id":162703190,"number":147,"title":"Bug in folder creation when tissue type is unspecified in ANOVAReport( )","user":{"login":"elisabeth-chen","id":19528552,"avatar_url":"https://avatars.githubusercontent.com/u/19528552?v=3","gravatar_id":"","url":"https://api.github.com/users/elisabeth-chen","html_url":"https://github.com/elisabeth-chen","followers_url":"https://api.github.com/users/elisabeth-chen/followers","following_url":"https://api.github.com/users/elisabeth-chen/following{/other_user}","gists_url":"https://api.github.com/users/elisabeth-chen/gists{/gist_id}","starred_url":"https://api.github.com/users/elisabeth-chen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/elisabeth-chen/subscriptions","organizations_url":"https://api.github.com/users/elisabeth-chen/orgs","repos_url":"https://api.github.com/users/elisabeth-chen/repos","events_url":"https://api.github.com/users/elisabeth-chen/events{/privacy}","received_events_url":"https://api.github.com/users/elisabeth-chen/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-06-28T14:41:32Z","updated_at":"2016-06-29T07:38:38Z","closed_at":"2016-06-29T07:38:38Z","body":"Following section 12. Reproducibility on gdsctools.readthedocs, \r\n\r\nWhen calling::\r\n`import wget #For python 3, wget is not default`\r\n`wget.download(http://www.cancerrxgene.org/gdsc1000/Data/anova/BRCA/DATA/INPUT/ANOVA_input.txt)`\r\n`from gdsctools import *`\r\n`an = ANOVA(\"ANOVA_input.txt\", \"ANOVA_input.txt\")`\r\n`an.setttings.pvalue_correction_method = \"qvalue\"`\r\n`an.settings.equal_var_ttest = False`\r\n`report = ANOVAReport(an)`\r\n`report.settings.directory = \"BRCA\"`\r\n`report.create_html_pages()`\r\n\r\nThe manova is created when defining the ANOVAReport class and is created in folder \"unspecified\". Setting report.settings.directory = \"BRCA\" creates a new folder \"BRCA\", where the html report is saved. However, original manova.html is still located in \"unspecified/associations/manova.html\", so clicking on the \"MANOVA Results\" link in section 3 of the html index (Explore all signfiicant results), gives a missing file error."},"comment":{"url":"https://api.github.com/repos/CancerRxGene/gdsctools/issues/comments/229280013","html_url":"https://github.com/CancerRxGene/gdsctools/issues/147#issuecomment-229280013","issue_url":"https://api.github.com/repos/CancerRxGene/gdsctools/issues/147","id":229280013,"user":{"login":"cokelaer","id":778821,"avatar_url":"https://avatars.githubusercontent.com/u/778821?v=3","gravatar_id":"","url":"https://api.github.com/users/cokelaer","html_url":"https://github.com/cokelaer","followers_url":"https://api.github.com/users/cokelaer/followers","following_url":"https://api.github.com/users/cokelaer/following{/other_user}","gists_url":"https://api.github.com/users/cokelaer/gists{/gist_id}","starred_url":"https://api.github.com/users/cokelaer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cokelaer/subscriptions","organizations_url":"https://api.github.com/users/cokelaer/orgs","repos_url":"https://api.github.com/users/cokelaer/repos","events_url":"https://api.github.com/users/cokelaer/events{/privacy}","received_events_url":"https://api.github.com/users/cokelaer/received_events","type":"User","site_admin":false},"created_at":"2016-06-29T07:38:38Z","updated_at":"2016-06-29T07:38:38Z","body":"This should work as expected now within the git source code"}}
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