{"action":"created","issue":{"url":"https://api.github.com/repos/clulab/reach/issues/450","repository_url":"https://api.github.com/repos/clulab/reach","labels_url":"https://api.github.com/repos/clulab/reach/issues/450/labels{/name}","comments_url":"https://api.github.com/repos/clulab/reach/issues/450/comments","events_url":"https://api.github.com/repos/clulab/reach/issues/450/events","html_url":"https://github.com/clulab/reach/issues/450","id":189534509,"number":450,"title":"Named entity prioritization issue","user":{"login":"bgyori","id":5939016,"avatar_url":"https://avatars.githubusercontent.com/u/5939016?v=3","gravatar_id":"","url":"https://api.github.com/users/bgyori","html_url":"https://github.com/bgyori","followers_url":"https://api.github.com/users/bgyori/followers","following_url":"https://api.github.com/users/bgyori/following{/other_user}","gists_url":"https://api.github.com/users/bgyori/gists{/gist_id}","starred_url":"https://api.github.com/users/bgyori/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bgyori/subscriptions","organizations_url":"https://api.github.com/users/bgyori/orgs","repos_url":"https://api.github.com/users/bgyori/repos","events_url":"https://api.github.com/users/bgyori/events{/privacy}","received_events_url":"https://api.github.com/users/bgyori/received_events","type":"User","site_admin":false},"labels":[{"id":158148097,"url":"https://api.github.com/repos/clulab/reach/labels/bug","name":"bug","color":"fc2929","default":true},{"id":394547781,"url":"https://api.github.com/repos/clulab/reach/labels/cleanup","name":"cleanup","color":"c5def5","default":false}],"state":"open","locked":false,"assignee":{"login":"MihaiSurdeanu","id":1179342,"avatar_url":"https://avatars.githubusercontent.com/u/1179342?v=3","gravatar_id":"","url":"https://api.github.com/users/MihaiSurdeanu","html_url":"https://github.com/MihaiSurdeanu","followers_url":"https://api.github.com/users/MihaiSurdeanu/followers","following_url":"https://api.github.com/users/MihaiSurdeanu/following{/other_user}","gists_url":"https://api.github.com/users/MihaiSurdeanu/gists{/gist_id}","starred_url":"https://api.github.com/users/MihaiSurdeanu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MihaiSurdeanu/subscriptions","organizations_url":"https://api.github.com/users/MihaiSurdeanu/orgs","repos_url":"https://api.github.com/users/MihaiSurdeanu/repos","events_url":"https://api.github.com/users/MihaiSurdeanu/events{/privacy}","received_events_url":"https://api.github.com/users/MihaiSurdeanu/received_events","type":"User","site_admin":false},"assignees":[{"login":"MihaiSurdeanu","id":1179342,"avatar_url":"https://avatars.githubusercontent.com/u/1179342?v=3","gravatar_id":"","url":"https://api.github.com/users/MihaiSurdeanu","html_url":"https://github.com/MihaiSurdeanu","followers_url":"https://api.github.com/users/MihaiSurdeanu/followers","following_url":"https://api.github.com/users/MihaiSurdeanu/following{/other_user}","gists_url":"https://api.github.com/users/MihaiSurdeanu/gists{/gist_id}","starred_url":"https://api.github.com/users/MihaiSurdeanu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MihaiSurdeanu/subscriptions","organizations_url":"https://api.github.com/users/MihaiSurdeanu/orgs","repos_url":"https://api.github.com/users/MihaiSurdeanu/repos","events_url":"https://api.github.com/users/MihaiSurdeanu/events{/privacy}","received_events_url":"https://api.github.com/users/MihaiSurdeanu/received_events","type":"User","site_admin":false}],"milestone":null,"comments":7,"created_at":"2016-11-15T23:12:23Z","updated_at":"2016-12-19T20:36:01Z","closed_at":null,"body":"We found that `DNA damage` which appears extremely often in the literature is cropped to `damage` and then grounded to MAGEE1 in UniProt. I would have expected `DNA damage` to appear as an entity that would be prioritized over `damage` as a longer match. The minimal example to reproduce this is the sentence: `DNA damage induces apoptosis`. @johnbachman might have other examples that include damage as a sub-string. "},"comment":{"url":"https://api.github.com/repos/clulab/reach/issues/comments/268071212","html_url":"https://github.com/clulab/reach/issues/450#issuecomment-268071212","issue_url":"https://api.github.com/repos/clulab/reach/issues/450","id":268071212,"user":{"login":"MihaiSurdeanu","id":1179342,"avatar_url":"https://avatars.githubusercontent.com/u/1179342?v=3","gravatar_id":"","url":"https://api.github.com/users/MihaiSurdeanu","html_url":"https://github.com/MihaiSurdeanu","followers_url":"https://api.github.com/users/MihaiSurdeanu/followers","following_url":"https://api.github.com/users/MihaiSurdeanu/following{/other_user}","gists_url":"https://api.github.com/users/MihaiSurdeanu/gists{/gist_id}","starred_url":"https://api.github.com/users/MihaiSurdeanu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MihaiSurdeanu/subscriptions","organizations_url":"https://api.github.com/users/MihaiSurdeanu/orgs","repos_url":"https://api.github.com/users/MihaiSurdeanu/repos","events_url":"https://api.github.com/users/MihaiSurdeanu/events{/privacy}","received_events_url":"https://api.github.com/users/MihaiSurdeanu/received_events","type":"User","site_admin":false},"created_at":"2016-12-19T20:36:01Z","updated_at":"2016-12-19T20:36:01Z","body":"This happened because \"damage\" is also a protein:\r\nGROUNDING: KBResolution(damage, uniprot, Q9HCI5, homo sapiens)\r\n\r\n@bgyori, @johnbachman: is this a valuable protein, or should we add \"damage\" to our stop-word list, i.e., words that are not tagged as entities when they appear in lower case?\r\n\r\n"}}
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