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I'll escape the other ones as well","created_at":"2016-09-02T14:34:59Z","updated_at":"2016-09-02T14:34:59Z","html_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/28#discussion_r77356159","pull_request_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/pulls/28","_links":{"self":{"href":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/pulls/comments/77356159"},"html":{"href":"https://github.com/SciLifeLab/NGI-RNAseq/pull/28#discussion_r77356159"},"pull_request":{"href":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/pulls/28"}}},"pull_request":{"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/pulls/28","id":83802921,"html_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/28","diff_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/28.diff","patch_url":"https://github.com/SciLifeLab/NGI-RNAseq/pull/28.patch","issue_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/28","number":28,"state":"open","locked":false,"title":"Version numbers to remaining processes","user":{"login":"Hammarn","id":16774076,"avatar_url":"https://avatars.githubusercontent.com/u/16774076?v=3","gravatar_id":"","url":"https://api.github.com/users/Hammarn","html_url":"https://github.com/Hammarn","followers_url":"https://api.github.com/users/Hammarn/followers","following_url":"https://api.github.com/users/Hammarn/following{/other_user}","gists_url":"https://api.github.com/users/Hammarn/gists{/gist_id}","starred_url":"https://api.github.com/users/Hammarn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Hammarn/subscriptions","organizations_url":"https://api.github.com/users/Hammarn/orgs","repos_url":"https://api.github.com/users/Hammarn/repos","events_url":"https://api.github.com/users/Hammarn/events{/privacy}","received_events_url":"https://api.github.com/users/Hammarn/received_events","type":"User","site_admin":false},"body":"We decided that it would be a good idea to inform the user of what version of a software that was used in the analysis and some of the software in the pipeline don't include the version number in their log file. \r\n\r\nThis is now printed to standard out so that @ewels can write a module for the NGI-plugin for MultiQC to pick these up and display them in the report. 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