{"action":"created","comment":{"url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/comments/65680907","id":65680907,"diff_hunk":"@@ -0,0 +1,251 @@\n+\n+#include \"medBinaryOperatorBase.h\"\n+\n+#include <dtkCore/dtkAbstractProcessFactory.h>\n+\n+#include <itkCastImageFilter.h>\n+#include <itkAndImageFilter.h>\n+#include <itkOrImageFilter.h>\n+#include <itkXorImageFilter.h>\n+\n+#include <medAbstractDataFactory.h>\n+#include <medMetaDataKeys.h>\n+#include <medUtilities.h>\n+\n+\n+medBinaryOperatorBase::medBinaryOperatorBase() : medAbstractProcess()\n+{\n+    m_inputA = NULL;\n+    m_inputB = NULL;\n+    m_output = medAbstractDataFactory::instance()->createSmartPointer ( \"itkDataImageUChar3\" );\n+}\n+\n+medBinaryOperatorBase::~medBinaryOperatorBase()\n+{\n+    m_inputA = NULL;\n+    m_inputB = NULL;\n+    m_output = NULL;\n+}\n+\n+void medBinaryOperatorBase::setInput ( medAbstractData *data, int channel)\n+{\n+    if ( channel == 0)\n+    {\n+        m_inputA = data;\n+    }\n+\n+    if ( channel == 1 )\n+    {        \n+        m_inputB = data;\n+    }\n+}\n+\n+int medBinaryOperatorBase::update()\n+{\n+    int res = DTK_FAILURE;\n+\n+    if (m_inputA)\n+    {\n+        QString id = m_inputA->identifier();\n+        \n+        if ( id == \"itkDataImageChar3\" )\n+        {\n+            res = run< itk::Image <char,3> >();\n+        }\n+        else if ( id == \"itkDataImageUChar3\" )\n+        {\n+            res = run< itk::Image <unsigned char,3> >();\n+        }\n+        else if ( id == \"itkDataImageShort3\" )\n+        {\n+            res = run< itk::Image <short,3> >();\n+        }\n+        else if ( id == \"itkDataImageUShort3\" )\n+        {\n+            res = run< itk::Image <unsigned short,3> >();\n+        }\n+        else if ( id == \"itkDataImageInt3\" )\n+        {\n+            res = run< itk::Image <int,3> >();\n+        }\n+        else if ( id == \"itkDataImageUInt3\" )\n+        {\n+            res = run< itk::Image <unsigned int,3> >();\n+        }\n+        else if ( id == \"itkDataImageLong3\" )\n+        {\n+            res = run< itk::Image <long,3> >();\n+        }\n+        else if ( id== \"itkDataImageULong3\" )\n+        {\n+            res = run< itk::Image <unsigned long,3> >();\n+        }\n+        else if ( id == \"itkDataImageFloat3\" )\n+        {\n+            res = run< itk::Image <float,3> >();\n+        }\n+        else if ( id == \"itkDataImageDouble3\" )\n+        {\n+            res = run< itk::Image <double,3> >();\n+        }\n+        else\n+        {\n+            res = medAbstractProcess::PIXEL_TYPE;\n+        }\n+    }\n+    return res;\n+}\n+\n+template <class ImageType> int medBinaryOperatorBase::run()\n+{\n+    int res = DTK_FAILURE;\n+\n+    if (m_inputB)\n+    {\n+        QString id = m_inputB->identifier();\n+        \n+        if ( id == \"itkDataImageChar3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <char,3> >();\n+        }\n+        else if ( id == \"itkDataImageUChar3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <unsigned char,3> >();\n+        }\n+        else if ( id == \"itkDataImageShort3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <short,3> >();\n+        }\n+        else if ( id == \"itkDataImageUShort3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <unsigned short,3> >();\n+        }\n+        else if ( id == \"itkDataImageInt3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <int,3> >();\n+        }\n+        else if ( id == \"itkDataImageUInt3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <unsigned int,3> >();\n+        }\n+        else if ( id == \"itkDataImageLong3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <long,3> >();\n+        }\n+        else if ( id== \"itkDataImageULong3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <unsigned long,3> >();\n+        }\n+        else if ( id == \"itkDataImageFloat3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <float,3> >();\n+        }\n+        else if ( id == \"itkDataImageDouble3\" )\n+        {\n+            res = runProcess< ImageType, itk::Image <double,3> >();\n+        }\n+        else\n+        {\n+            res = medAbstractProcess::PIXEL_TYPE;\n+        }\n+    }\n+    return res;\n+}\n+\n+template <class ImageType, class ImageType2> int medBinaryOperatorBase::runProcess()\n+{\n+    if ( !m_inputA->data() || !m_inputB->data())\n+    {\n+        return DTK_FAILURE;\n+    }\n+\n+    typedef itk::Image<unsigned char, 3> ImageTypeOutput;\n+    ImageTypeOutput::Pointer imageA;\n+    ImageTypeOutput::Pointer imageB;\n+\n+    if (m_inputA->identifier() != \"itkDataImageUChar3\")\n+    {\n+        typename ImageType::Pointer imA = dynamic_cast< ImageType*>((itk::Object*)(m_inputA->data()));\n+        typedef itk::CastImageFilter< ImageType, ImageTypeOutput > CasterType;\n+        typename CasterType::Pointer caster = CasterType::New();\n+        caster->SetInput(imA);\n+        caster->Update();\n+        imageA = caster->GetOutput();\n+    }\n+    else\n+    {\n+        imageA = dynamic_cast< ImageTypeOutput*>((itk::Object*)(m_inputA->data()));\n+    }\n+\n+    if (m_inputB->identifier() != \"itkDataImageUChar3\")\n+    {\n+        typename ImageType2::Pointer imB = dynamic_cast< ImageType2*>((itk::Object*)(m_inputB->data()));\n+        typedef itk::CastImageFilter< ImageType2, ImageTypeOutput > CasterType;\n+        typename CasterType::Pointer caster = CasterType::New();\n+        caster->SetInput(imB);\n+        caster->Update();\n+        imageB = caster->GetOutput();\n+    }\n+    else\n+    {\n+        imageB = dynamic_cast< ImageTypeOutput*>((itk::Object*)(m_inputB->data()));\n+    }","path":"src-plugins/medBinaryOperation/medBinaryOperatorBase.cpp","position":192,"original_position":192,"commit_id":"dc378ba6b66d5a464e65468189f09b648f2e1257","original_commit_id":"dc378ba6b66d5a464e65468189f09b648f2e1257","user":{"login":"fcollot","id":7769799,"avatar_url":"https://avatars.githubusercontent.com/u/7769799?v=3","gravatar_id":"","url":"https://api.github.com/users/fcollot","html_url":"https://github.com/fcollot","followers_url":"https://api.github.com/users/fcollot/followers","following_url":"https://api.github.com/users/fcollot/following{/other_user}","gists_url":"https://api.github.com/users/fcollot/gists{/gist_id}","starred_url":"https://api.github.com/users/fcollot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fcollot/subscriptions","organizations_url":"https://api.github.com/users/fcollot/orgs","repos_url":"https://api.github.com/users/fcollot/repos","events_url":"https://api.github.com/users/fcollot/events{/privacy}","received_events_url":"https://api.github.com/users/fcollot/received_events","type":"User","site_admin":false},"body":"I don't understand why there is a cast in the first place, since the template function for the filters takes the two input types as well as the output type.","created_at":"2016-06-03T09:36:11Z","updated_at":"2016-06-03T09:36:11Z","html_url":"https://github.com/Inria-Asclepios/medInria-public/pull/44#discussion_r65680907","pull_request_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/44","_links":{"self":{"href":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/comments/65680907"},"html":{"href":"https://github.com/Inria-Asclepios/medInria-public/pull/44#discussion_r65680907"},"pull_request":{"href":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/44"}}},"pull_request":{"url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/44","id":66814254,"html_url":"https://github.com/Inria-Asclepios/medInria-public/pull/44","diff_url":"https://github.com/Inria-Asclepios/medInria-public/pull/44.diff","patch_url":"https://github.com/Inria-Asclepios/medInria-public/pull/44.patch","issue_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/issues/44","number":44,"state":"open","locked":false,"title":"[binaryOperator] makes operators inherit from new class ..OperatorBase","user":{"login":"LoicCadour","id":3705584,"avatar_url":"https://avatars.githubusercontent.com/u/3705584?v=3","gravatar_id":"","url":"https://api.github.com/users/LoicCadour","html_url":"https://github.com/LoicCadour","followers_url":"https://api.github.com/users/LoicCadour/followers","following_url":"https://api.github.com/users/LoicCadour/following{/other_user}","gists_url":"https://api.github.com/users/LoicCadour/gists{/gist_id}","starred_url":"https://api.github.com/users/LoicCadour/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LoicCadour/subscriptions","organizations_url":"https://api.github.com/users/LoicCadour/orgs","repos_url":"https://api.github.com/users/LoicCadour/repos","events_url":"https://api.github.com/users/LoicCadour/events{/privacy}","received_events_url":"https://api.github.com/users/LoicCadour/received_events","type":"User","site_admin":false},"body":"### What's the pb?\r\nModifying the errors handling in the medBinaryOperators, I noticed that they were sharing most of their code. \r\n\r\n### How does this PR solve it?\r\nI proceeded as I did with the morphological filters: I created a `medBinaryOperatorBase` class and made the operators inherit from it. Each operator has just now a registration method as well as a description method, except the NOT operator. Since it needs only one input, I had to overload some methods.\r\nI also made these tools use our new error notification system.\r\n\r\n### Some explanations \r\nSince the methods of the NOT operator were using the attributes of `medBinaryOperatorBase` (`inputA` and `output`), I had to make these attributes `protected`(and no more `private`) which makes me remove the class `medBinaryOperatorBasePrivate` that I just created. \r\nWhich created a problem: we were now having the attribute `output` belonging to a class that has a method called `output()`. So, I had to rename this attribute, I picked `m_output` and renamed the other attributes the same way.","created_at":"2016-04-18T08:19:32Z","updated_at":"2016-06-03T09:36:12Z","closed_at":null,"merged_at":null,"merge_commit_sha":"c2f1fe53fb6202ef723cf45e83163c3b551a81b5","assignee":{"login":"LoicCadour","id":3705584,"avatar_url":"https://avatars.githubusercontent.com/u/3705584?v=3","gravatar_id":"","url":"https://api.github.com/users/LoicCadour","html_url":"https://github.com/LoicCadour","followers_url":"https://api.github.com/users/LoicCadour/followers","following_url":"https://api.github.com/users/LoicCadour/following{/other_user}","gists_url":"https://api.github.com/users/LoicCadour/gists{/gist_id}","starred_url":"https://api.github.com/users/LoicCadour/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LoicCadour/subscriptions","organizations_url":"https://api.github.com/users/LoicCadour/orgs","repos_url":"https://api.github.com/users/LoicCadour/repos","events_url":"https://api.github.com/users/LoicCadour/events{/privacy}","received_events_url":"https://api.github.com/users/LoicCadour/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/milestones/2","html_url":"https://github.com/Inria-Asclepios/medInria-public/milestones/1.1.0","labels_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/milestones/2/labels","id":1804921,"number":2,"title":"1.1.0","description":"","creator":{"login":"LoicCadour","id":3705584,"avatar_url":"https://avatars.githubusercontent.com/u/3705584?v=3","gravatar_id":"","url":"https://api.github.com/users/LoicCadour","html_url":"https://github.com/LoicCadour","followers_url":"https://api.github.com/users/LoicCadour/followers","following_url":"https://api.github.com/users/LoicCadour/following{/other_user}","gists_url":"https://api.github.com/users/LoicCadour/gists{/gist_id}","starred_url":"https://api.github.com/users/LoicCadour/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LoicCadour/subscriptions","organizations_url":"https://api.github.com/users/LoicCadour/orgs","repos_url":"https://api.github.com/users/LoicCadour/repos","events_url":"https://api.github.com/users/LoicCadour/events{/privacy}","received_events_url":"https://api.github.com/users/LoicCadour/received_events","type":"User","site_admin":false},"open_issues":3,"closed_issues":0,"state":"open","created_at":"2016-06-02T13:10:32Z","updated_at":"2016-06-02T13:10:54Z","due_on":null,"closed_at":null},"commits_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/44/commits","review_comments_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/44/comments","review_comment_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/pulls/comments{/number}","comments_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/issues/44/comments","statuses_url":"https://api.github.com/repos/Inria-Asclepios/medInria-public/statuses/dc378ba6b66d5a464e65468189f09b648f2e1257","head":{"label":"LoicCadour:binary","ref":"binary","sha":"dc378ba6b66d5a464e65468189f09b648f2e1257","user":{"login":"LoicCadour","id":3705584,"avatar_url":"https://avatars.githubusercontent.com/u/3705584?v=3","gravatar_id":"","url":"https://api.github.com/users/LoicCadour","html_url":"https://github.com/LoicCadour","followers_url":"https://api.github.com/users/LoicCadour/followers","following_url":"https://api.github.com/users/LoicCadour/following{/other_user}","gists_url":"https://api.github.com/users/LoicCadour/gists{/gist_id}","starred_url":"https://api.github.com/users/LoicCadour/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LoicCadour/subscriptions","organizations_url":"https://api.github.com/users/LoicCadour/orgs","repos_url":"https://api.github.com/users/LoicCadour/repos","events_url":"https://api.github.com/users/LoicCadour/events{/privacy}","received_events_url":"https://api.github.com/users/LoicCadour/received_events","type":"User","site_admin":false},"repo":{"id":8948739,"name":"medInria-public","full_name":"LoicCadour/medInria-public","owner":{"login":"LoicCadour","id":3705584,"avatar_url":"https://avatars.githubusercontent.com/u/3705584?v=3","gravatar_id":"","url":"https://api.github.com/users/LoicCadour","html_url":"https://github.com/LoicCadour","followers_url":"https://api.github.com/users/LoicCadour/followers","following_url":"https://api.github.com/users/LoicCadour/following{/other_user}","gists_url":"https://api.github.com/users/LoicCadour/gists{/gist_id}","starred_url":"https://api.github.com/users/LoicCadour/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LoicCadour/subscriptions","organizations_url":"https://api.github.com/users/LoicCadour/orgs","repos_url":"https://api.github.com/users/LoicCadour/repos","events_url":"https://api.github.com/users/LoicCadour/events{/privacy}","received_events_url":"https://api.github.com/users/LoicCadour/received_events","type":"User","site_admin":false},"pr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