{"action":"created","issue":{"url":"https://api.github.com/repos/bioconda/bioconda-recipes/issues/1201","repository_url":"https://api.github.com/repos/bioconda/bioconda-recipes","labels_url":"https://api.github.com/repos/bioconda/bioconda-recipes/issues/1201/labels{/name}","comments_url":"https://api.github.com/repos/bioconda/bioconda-recipes/issues/1201/comments","events_url":"https://api.github.com/repos/bioconda/bioconda-recipes/issues/1201/events","html_url":"https://github.com/bioconda/bioconda-recipes/pull/1201","id":145984381,"number":1201,"title":"Remove GCC and zlib from the container","user":{"login":"bgruening","id":469983,"avatar_url":"https://avatars.githubusercontent.com/u/469983?v=3","gravatar_id":"","url":"https://api.github.com/users/bgruening","html_url":"https://github.com/bgruening","followers_url":"https://api.github.com/users/bgruening/followers","following_url":"https://api.github.com/users/bgruening/following{/other_user}","gists_url":"https://api.github.com/users/bgruening/gists{/gist_id}","starred_url":"https://api.github.com/users/bgruening/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bgruening/subscriptions","organizations_url":"https://api.github.com/users/bgruening/orgs","repos_url":"https://api.github.com/users/bgruening/repos","events_url":"https://api.github.com/users/bgruening/events{/privacy}","received_events_url":"https://api.github.com/users/bgruening/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/bioconda/bioconda-recipes/labels/help%20wanted","name":"help wanted","color":"159818"},{"url":"https://api.github.com/repos/bioconda/bioconda-recipes/labels/question","name":"question","color":"cc317c"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":12,"created_at":"2016-04-05T13:13:16Z","updated_at":"2016-04-11T00:42:26Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/bioconda/bioconda-recipes/pulls/1201","html_url":"https://github.com/bioconda/bioconda-recipes/pull/1201","diff_url":"https://github.com/bioconda/bioconda-recipes/pull/1201.diff","patch_url":"https://github.com/bioconda/bioconda-recipes/pull/1201.patch"},"body":"This one will remove a lot of dependencies, gcc, g++, zlib. This is to force new recipes to use stricter build- and run-time dependencies.\r\n\r\nThis PR is mainly to start a discussion. I once tried to remove zlib and fix all old recipes and failed because it can be really hard for some recipes or the URL from these old packages were not available."},"comment":{"url":"https://api.github.com/repos/bioconda/bioconda-recipes/issues/comments/208103340","html_url":"https://github.com/bioconda/bioconda-recipes/pull/1201#issuecomment-208103340","issue_url":"https://api.github.com/repos/bioconda/bioconda-recipes/issues/1201","id":208103340,"user":{"login":"daler","id":115406,"avatar_url":"https://avatars.githubusercontent.com/u/115406?v=3","gravatar_id":"","url":"https://api.github.com/users/daler","html_url":"https://github.com/daler","followers_url":"https://api.github.com/users/daler/followers","following_url":"https://api.github.com/users/daler/following{/other_user}","gists_url":"https://api.github.com/users/daler/gists{/gist_id}","starred_url":"https://api.github.com/users/daler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/daler/subscriptions","organizations_url":"https://api.github.com/users/daler/orgs","repos_url":"https://api.github.com/users/daler/repos","events_url":"https://api.github.com/users/daler/events{/privacy}","received_events_url":"https://api.github.com/users/daler/received_events","type":"User","site_admin":false},"created_at":"2016-04-11T00:42:26Z","updated_at":"2016-04-11T00:42:26Z","body":"Thanks, but trying \r\n```\r\nexport CFLAGS=\"-I$PREFIX/include\"\r\nexport LDFLAGS=\"-L$PREFIX/lib\"\r\n```\r\n in samtools/build.sh didn't work -- same error as above. Any other ideas?\r\n\r\nAs far as packages, I narrowed it down to just `autotools-latest` that is pulling in `gcc` as a dependency.\r\n\r\n"}}