{"action":"opened","issue":{"url":"https://api.github.com/repos/ebi-chebi/ChEBI/issues/3157","repository_url":"https://api.github.com/repos/ebi-chebi/ChEBI","labels_url":"https://api.github.com/repos/ebi-chebi/ChEBI/issues/3157/labels{/name}","comments_url":"https://api.github.com/repos/ebi-chebi/ChEBI/issues/3157/comments","events_url":"https://api.github.com/repos/ebi-chebi/ChEBI/issues/3157/events","html_url":"https://github.com/ebi-chebi/ChEBI/issues/3157","id":155606620,"number":3157,"title":"ChEBI OWL file appears truncated and thus malformed XML.","user":{"login":"abargnesi","id":149445,"avatar_url":"https://avatars.githubusercontent.com/u/149445?v=3","gravatar_id":"","url":"https://api.github.com/users/abargnesi","html_url":"https://github.com/abargnesi","followers_url":"https://api.github.com/users/abargnesi/followers","following_url":"https://api.github.com/users/abargnesi/following{/other_user}","gists_url":"https://api.github.com/users/abargnesi/gists{/gist_id}","starred_url":"https://api.github.com/users/abargnesi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/abargnesi/subscriptions","organizations_url":"https://api.github.com/users/abargnesi/orgs","repos_url":"https://api.github.com/users/abargnesi/repos","events_url":"https://api.github.com/users/abargnesi/events{/privacy}","received_events_url":"https://api.github.com/users/abargnesi/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-05-18T21:32:39Z","updated_at":"2016-05-18T21:32:39Z","closed_at":null,"body":"I have downloaded the ChEBI OWL file on the FTP site [here](ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.owl), but it appears incomplete.\r\n\r\nThe *chebi.owl* file appears truncated with the last 10 lines of:\r\n\r\n```xml\r\n        <owl:annotatedSource rdf:resource=\"http://purl.obolibrary.org/obo/CHEBI_125076\"/>\r\n        <oboInOwl:hasSynonymType rdf:resource=\"http://purl.obolibrary.org/obo/chebi#SMILES\"/>\r\n        <owl:annotatedProperty rdf:resource=\"http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym\"/>\r\n    </owl:Axiom>\r\n    <owl:Axiom>\r\n        <oboInOwl:hasDbXref rdf:datatype=\"http://www.w3.org/2001/XMLSchema#string\">ChEBI:</oboInOwl:hasDbXref>\r\n        <owl:annotatedTarget rdf:datatype=\"http://www.w3.org/2001/XMLSchema#string\">InChI=1S/C27H24N2O3/c30-27(21-12-13-24-25(14-21)32-17-31-24)29-15-22-26(23(16-29)28-22)20-10-8-19(9-11-20)7-6-18-4-2-1-3-5-18/h1-14,22-23,26,28H,15-17H2/t22-,23+,26?</owl:annotatedTarget>\r\n        <owl:annotatedSource rdf:resource=\"http://purl.obolibrary.org/obo/CHEBI_125076\"/>\r\n        <oboInOwl:hasSynonymType rdf:resource=\"http://purl.obolibrary.org/obo/chebi#InChI\"/>\r\n        <owl:annotatedProperty rdf:resource=\"http://www.geneontology.org/format\r\n```\r\n\r\nUsing wget I receive the following:\r\n\r\n```bash\r\n$ wget -v \"ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.owl\"\r\n--2016-05-18 17:25:26--  ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.owl\r\n           => ‘chebi.owl’\r\nResolving ftp.ebi.ac.uk (ftp.ebi.ac.uk)... 193.62.194.182\r\nConnecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.194.182|:21... connected.\r\nLogging in as anonymous ... Logged in!\r\n==> SYST ... done.    ==> PWD ... done.\r\n==> TYPE I ... done.  ==> CWD (1) /pub/databases/chebi/ontology ... done.\r\n==> SIZE chebi.owl ... 120184832\r\n==> PASV ... done.    ==> RETR chebi.owl ... done.\r\nLength: 120184832 (115M) (unauthoritative)\r\n\r\nchebi.owl           100%[==================>] 114.62M  3.13MB/s    in 36s\r\n```\r\n\r\nThe downloaded file size in bytes is `120184832` and the SHA-1 checksum is `c840dcc59ce4387068c1c00b851f7f2c6efce9e4`.\r\n\r\nThanks!"}}