{"action":"created","issue":{"url":"https://api.github.com/repos/marbl/canu/issues/222","repository_url":"https://api.github.com/repos/marbl/canu","labels_url":"https://api.github.com/repos/marbl/canu/issues/222/labels{/name}","comments_url":"https://api.github.com/repos/marbl/canu/issues/222/comments","events_url":"https://api.github.com/repos/marbl/canu/issues/222/events","html_url":"https://github.com/marbl/canu/issues/222","id":170301870,"number":222,"title":"MhapRuntimeException:　K-mer filter file first line must contain estimated number of k-mers in the file (long)","user":{"login":"bioprojects","id":4473268,"avatar_url":"https://avatars.githubusercontent.com/u/4473268?v=3","gravatar_id":"","url":"https://api.github.com/users/bioprojects","html_url":"https://github.com/bioprojects","followers_url":"https://api.github.com/users/bioprojects/followers","following_url":"https://api.github.com/users/bioprojects/following{/other_user}","gists_url":"https://api.github.com/users/bioprojects/gists{/gist_id}","starred_url":"https://api.github.com/users/bioprojects/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bioprojects/subscriptions","organizations_url":"https://api.github.com/users/bioprojects/orgs","repos_url":"https://api.github.com/users/bioprojects/repos","events_url":"https://api.github.com/users/bioprojects/events{/privacy}","received_events_url":"https://api.github.com/users/bioprojects/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-08-10T00:24:47Z","updated_at":"2016-08-10T17:30:34Z","closed_at":null,"body":"Dear developers, \r\n\r\nThank you for developing and maintaining this great software!\r\n\r\nI'm try to assemble R9 1D data\r\nhttp://s3.climb.ac.uk/nanopore/E_coli_K12_1D_R9.2_SpotON_2.pass.fasta\r\n\r\nbut canu causes the following error:\r\nReading in filter file ~/nanopore/ecoli_R9/correction/0-mercounts/ecoli.ms16.frequentMers.ignore.gz.\r\nException in thread \"main\" Starting mhap precompute.\r\nedu.umd.marbl.mhap.impl.MhapRuntimeException: Could not parse k-mer filter file.\r\nMhapRuntimeException: K-mer filter file first line must contain estimated number of k-mers in the file (long)\r\n\r\nWhen I look at the \"igonore.gz\" file, the first line is \"-1\" although the file has 145 rows.\r\nIs it perhaps the cause?\r\n\r\nCould you help how to fix this problem?\r\n\r\nThank you very much in advance.\r\n\r\nKoji Yahara\r\nSenior Research Fellow\r\nDepartment of Bacteriology II\r\nNational Institute of Infectious Diseases\r\n4-7-1 Gakuen, Musashimurayama, Tokyo\r\n2080011 Japan\r\nTel: +81-42-561-0771 (Ex. 3539)\r\n\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/marbl/canu/issues/comments/238941379","html_url":"https://github.com/marbl/canu/issues/222#issuecomment-238941379","issue_url":"https://api.github.com/repos/marbl/canu/issues/222","id":238941379,"user":{"login":"bioprojects","id":4473268,"avatar_url":"https://avatars.githubusercontent.com/u/4473268?v=3","gravatar_id":"","url":"https://api.github.com/users/bioprojects","html_url":"https://github.com/bioprojects","followers_url":"https://api.github.com/users/bioprojects/followers","following_url":"https://api.github.com/users/bioprojects/following{/other_user}","gists_url":"https://api.github.com/users/bioprojects/gists{/gist_id}","starred_url":"https://api.github.com/users/bioprojects/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bioprojects/subscriptions","organizations_url":"https://api.github.com/users/bioprojects/orgs","repos_url":"https://api.github.com/users/bioprojects/repos","events_url":"https://api.github.com/users/bioprojects/events{/privacy}","received_events_url":"https://api.github.com/users/bioprojects/received_events","type":"User","site_admin":false},"created_at":"2016-08-10T17:30:34Z","updated_at":"2016-08-10T17:30:34Z","body":"Thank you very much! But the compilation failed in my environment.\r\nCould you attach the recompiled meryl here?"}}
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