{"action":"closed","issue":{"url":"https://api.github.com/repos/jreps/patientCluster/issues/1","repository_url":"https://api.github.com/repos/jreps/patientCluster","labels_url":"https://api.github.com/repos/jreps/patientCluster/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/jreps/patientCluster/issues/1/comments","events_url":"https://api.github.com/repos/jreps/patientCluster/issues/1/events","html_url":"https://github.com/jreps/patientCluster/issues/1","id":149540099,"number":1,"title":"Error: 'mem.limits' is defunct in R 3.2.3","user":{"login":"thamilt9","id":18351922,"avatar_url":"https://avatars.githubusercontent.com/u/18351922?v=3","gravatar_id":"","url":"https://api.github.com/users/thamilt9","html_url":"https://github.com/thamilt9","followers_url":"https://api.github.com/users/thamilt9/followers","following_url":"https://api.github.com/users/thamilt9/following{/other_user}","gists_url":"https://api.github.com/users/thamilt9/gists{/gist_id}","starred_url":"https://api.github.com/users/thamilt9/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thamilt9/subscriptions","organizations_url":"https://api.github.com/users/thamilt9/orgs","repos_url":"https://api.github.com/users/thamilt9/repos","events_url":"https://api.github.com/users/thamilt9/events{/privacy}","received_events_url":"https://api.github.com/users/thamilt9/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-04-19T18:14:00Z","updated_at":"2016-04-22T11:25:03Z","closed_at":"2016-04-22T11:25:03Z","body":"Hi Jenna,\r\n\r\nWhen I run patientCluster::clusterPeople, I get an error that mem.limits is defunct, and to use 'gc' instead.  I'm on R 3.2.3, and Frank tried it and succeeded in R 3.2.2.  Here's the full output of the run, along with a stacktrace:\r\n\r\n```\r\n> clusterCohort(5,1)\r\nConnecting using SQL Server driver\r\nChecking input...\r\nExtracting data...\r\n  |======================================================================| 100%\r\nAnalysis took 1.5 mins\r\nFound 92858 cohort people in cohort_id 5\r\nEnough people... Extracting covariate data\r\nData extracted ...\r\n Connection successful!\r\n\r\nR is connected to the H2O cluster:\r\n    H2O cluster uptime:         1 minutes 42 seconds\r\n    H2O cluster version:        3.8.1.3\r\n    H2O cluster name:           H2O_started_from_R_root_fci451\r\n    H2O cluster total nodes:    1\r\n    H2O cluster total memory:   0.77 GB\r\n    H2O cluster total cores:    15\r\n    H2O cluster allowed cores:  2\r\n    H2O cluster healthy:        TRUE\r\n    H2O Connection ip:          localhost\r\n    H2O Connection port:        54321\r\n    H2O Connection proxy:       NA\r\n    R Version:                  R version 3.2.3 (2015-12-10)\r\n\r\nError: 'mem.limits' is defunct.\r\nUse 'gc' instead.\r\nSee help(\"Defunct\")\r\n> traceback()\r\n6: stop(paste(msg, collapse = \"\"), call. = FALSE, domain = NA)\r\n5: .Defunct(\"gc\")\r\n4: mem.limits(nsize = NA, vsize = NA)\r\n3: paste0(mem.limits(nsize = NA, vsize = NA) * 0.8, \"g\")\r\n2: patientCluster::clusterPeople(cohort.raw, ffloc = \"D:/fftemp\")\r\n1: clusterCohort(5, 1)\r\n```\r\n\r\nThanks,\r\n-Taylor"}}