{"action":"closed","issue":{"url":"https://api.github.com/repos/ucsc-mus-strain-cactus/Comparative-Annotation-Toolkit/issues/21","repository_url":"https://api.github.com/repos/ucsc-mus-strain-cactus/Comparative-Annotation-Toolkit","labels_url":"https://api.github.com/repos/ucsc-mus-strain-cactus/Comparative-Annotation-Toolkit/issues/21/labels{/name}","comments_url":"https://api.github.com/repos/ucsc-mus-strain-cactus/Comparative-Annotation-Toolkit/issues/21/comments","events_url":"https://api.github.com/repos/ucsc-mus-strain-cactus/Comparative-Annotation-Toolkit/issues/21/events","html_url":"https://github.com/ucsc-mus-strain-cactus/Comparative-Annotation-Toolkit/issues/21","id":179517868,"number":21,"title":"Use fasttree to generate gene trees for all paralogous alignments","user":{"login":"ifiddes","id":7818077,"avatar_url":"https://avatars.githubusercontent.com/u/7818077?v=3","gravatar_id":"","url":"https://api.github.com/users/ifiddes","html_url":"https://github.com/ifiddes","followers_url":"https://api.github.com/users/ifiddes/followers","following_url":"https://api.github.com/users/ifiddes/following{/other_user}","gists_url":"https://api.github.com/users/ifiddes/gists{/gist_id}","starred_url":"https://api.github.com/users/ifiddes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ifiddes/subscriptions","organizations_url":"https://api.github.com/users/ifiddes/orgs","repos_url":"https://api.github.com/users/ifiddes/repos","events_url":"https://api.github.com/users/ifiddes/events{/privacy}","received_events_url":"https://api.github.com/users/ifiddes/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-09-27T14:57:35Z","updated_at":"2016-10-25T16:07:20Z","closed_at":"2016-10-25T16:07:20Z","body":"This can help resolve the correct ortholog, and probably do better than the synteny score. May also want to consider some sort of consensus of synteny score and tree distance (if more than one sequence is very close to the other sequences, resolve based on synteny)."}}
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