{"action":"created","issue":{"url":"https://api.github.com/repos/thegenemyers/DAZZ_DB/issues/20","repository_url":"https://api.github.com/repos/thegenemyers/DAZZ_DB","labels_url":"https://api.github.com/repos/thegenemyers/DAZZ_DB/issues/20/labels{/name}","comments_url":"https://api.github.com/repos/thegenemyers/DAZZ_DB/issues/20/comments","events_url":"https://api.github.com/repos/thegenemyers/DAZZ_DB/issues/20/events","html_url":"https://github.com/thegenemyers/DAZZ_DB/issues/20","id":159672342,"number":20,"title":"Non-interactive DBsplit","user":{"login":"pb-cdunn","id":12086299,"avatar_url":"https://avatars.githubusercontent.com/u/12086299?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-cdunn","html_url":"https://github.com/pb-cdunn","followers_url":"https://api.github.com/users/pb-cdunn/followers","following_url":"https://api.github.com/users/pb-cdunn/following{/other_user}","gists_url":"https://api.github.com/users/pb-cdunn/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-cdunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-cdunn/subscriptions","organizations_url":"https://api.github.com/users/pb-cdunn/orgs","repos_url":"https://api.github.com/users/pb-cdunn/repos","events_url":"https://api.github.com/users/pb-cdunn/events{/privacy}","received_events_url":"https://api.github.com/users/pb-cdunn/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-06-10T16:23:56Z","updated_at":"2016-06-13T06:35:08Z","closed_at":"2016-06-13T06:35:08Z","body":"```sh\r\n+ DBsplit -x250 -s500 -a rawreads\r\nYou are about to overwrite the current partition settings.  This\r\nwill invalidate any tracks, overlaps, and other derivative files.\r\nAre you sure you want to proceed? [Y/N]\r\n```\r\nThat's a problem when it happens within a script. It's important to be able to re-use `.bps` and `.idx`, since recreating that from 300GB of gzipped fasta takes `30-40mins`. In our workflow, on a restart we delete all the tracks, etc. and re-split if parameters have changed.\r\n\r\nI guess `DBsplit` needs a non-interactive flag. Maybe `-f` for \"force\"?"},"comment":{"url":"https://api.github.com/repos/thegenemyers/DAZZ_DB/issues/comments/225499462","html_url":"https://github.com/thegenemyers/DAZZ_DB/issues/20#issuecomment-225499462","issue_url":"https://api.github.com/repos/thegenemyers/DAZZ_DB/issues/20","id":225499462,"user":{"login":"pb-cdunn","id":12086299,"avatar_url":"https://avatars.githubusercontent.com/u/12086299?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-cdunn","html_url":"https://github.com/pb-cdunn","followers_url":"https://api.github.com/users/pb-cdunn/followers","following_url":"https://api.github.com/users/pb-cdunn/following{/other_user}","gists_url":"https://api.github.com/users/pb-cdunn/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-cdunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-cdunn/subscriptions","organizations_url":"https://api.github.com/users/pb-cdunn/orgs","repos_url":"https://api.github.com/users/pb-cdunn/repos","events_url":"https://api.github.com/users/pb-cdunn/events{/privacy}","received_events_url":"https://api.github.com/users/pb-cdunn/received_events","type":"User","site_admin":false},"created_at":"2016-06-13T06:35:08Z","updated_at":"2016-06-13T06:35:08Z","body":"Thanks, Gene!"}}
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