{"action":"closed","issue":{"url":"https://api.github.com/repos/rordenlab/dcm2niix/issues/57","repository_url":"https://api.github.com/repos/rordenlab/dcm2niix","labels_url":"https://api.github.com/repos/rordenlab/dcm2niix/issues/57/labels{/name}","comments_url":"https://api.github.com/repos/rordenlab/dcm2niix/issues/57/comments","events_url":"https://api.github.com/repos/rordenlab/dcm2niix/issues/57/events","html_url":"https://github.com/rordenlab/dcm2niix/issues/57","id":185230658,"number":57,"title":"Preventing reorientation?","user":{"login":"lwallace233","id":23063269,"avatar_url":"https://avatars.githubusercontent.com/u/23063269?v=3","gravatar_id":"","url":"https://api.github.com/users/lwallace233","html_url":"https://github.com/lwallace233","followers_url":"https://api.github.com/users/lwallace233/followers","following_url":"https://api.github.com/users/lwallace233/following{/other_user}","gists_url":"https://api.github.com/users/lwallace233/gists{/gist_id}","starred_url":"https://api.github.com/users/lwallace233/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lwallace233/subscriptions","organizations_url":"https://api.github.com/users/lwallace233/orgs","repos_url":"https://api.github.com/users/lwallace233/repos","events_url":"https://api.github.com/users/lwallace233/events{/privacy}","received_events_url":"https://api.github.com/users/lwallace233/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-10-25T20:52:03Z","updated_at":"2016-10-26T13:26:45Z","closed_at":"2016-10-26T13:26:45Z","body":"We have a DICOM dataset that is 16-bit with 256x256 resolution and 176 slices in coronal orientation and comes out of conversion as a NIFTI dataset that is 16-bit with 176x256 resolution and 256 slices in axial orientation. Is there a way to stop the reorientation from occurring?\r\n\r\nIn dcm2nii there seems to have been a MinReorientMatrix defined in the .dcm2nii.ini file where matrices over the size given (the default was 255) were reoriented and ones below that threshold were not, and the threshold could be changed as necessary, but I do not see a similar parameter anywhere in dcm2niix."}}
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