{"action":"opened","issue":{"url":"https://api.github.com/repos/vcftools/vcftools/issues/39","repository_url":"https://api.github.com/repos/vcftools/vcftools","labels_url":"https://api.github.com/repos/vcftools/vcftools/issues/39/labels{/name}","comments_url":"https://api.github.com/repos/vcftools/vcftools/issues/39/comments","events_url":"https://api.github.com/repos/vcftools/vcftools/issues/39/events","html_url":"https://github.com/vcftools/vcftools/issues/39","id":146723544,"number":39,"title":"Errors on multiple scripts","user":{"login":"nuin","id":6273,"avatar_url":"https://avatars.githubusercontent.com/u/6273?v=3","gravatar_id":"","url":"https://api.github.com/users/nuin","html_url":"https://github.com/nuin","followers_url":"https://api.github.com/users/nuin/followers","following_url":"https://api.github.com/users/nuin/following{/other_user}","gists_url":"https://api.github.com/users/nuin/gists{/gist_id}","starred_url":"https://api.github.com/users/nuin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nuin/subscriptions","organizations_url":"https://api.github.com/users/nuin/orgs","repos_url":"https://api.github.com/users/nuin/repos","events_url":"https://api.github.com/users/nuin/events{/privacy}","received_events_url":"https://api.github.com/users/nuin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-04-07T19:42:39Z","updated_at":"2016-04-07T19:42:39Z","closed_at":null,"body":"Hi\r\n\r\nI am having errors on multiple Perl scripts on OS X with Perl 5.18.2 \r\n\r\n```\r\nThis is perl 5, version 18, subversion 2 (v5.18.2) built for darwin-thread-multi-2level\r\n(with 2 registered patches, see perl -V for more detail)\r\n```\r\n\r\nOne example of the errors I am getting is this\r\n\r\n```perl\r\nvcf-isec -c freebayes.sorted.vcf.gz raw_variants.vcf.gz varscan_intersect.vcf.gz                                               [ruby-2.0.0p645]\r\nSubroutine validate redefined at /Library/Perl/5.18/Vcf.pm line 94.\r\nSubroutine validate_v32 redefined at /Library/Perl/5.18/Vcf.pm line 117.\r\nSubroutine new redefined at /Library/Perl/5.18/Vcf.pm line 147.\r\nSubroutine throw redefined at /Library/Perl/5.18/Vcf.pm line 175.\r\nAmbiguous call resolved as CORE::warn(), qualify as such or use & at /Library/Perl/5.18/Vcf.pm line 185.\r\nSubroutine warn redefined at /Library/Perl/5.18/Vcf.pm line 181.\r\nAmbiguous call resolved as CORE::open(), qualify as such or use & at /Library/Perl/5.18/Vcf.pm line 222.\r\nSubroutine _open redefined at /Library/Perl/5.18/Vcf.pm line 189.\r\nSubroutine open redefined at /Library/Perl/5.18/Vcf.pm line 249.\r\nAmbiguous call resolved as CORE::close(), qualify as such or use & at /Library/Perl/5.18/Vcf.pm line 269.\r\nSubroutine close redefined at /Library/Perl/5.18/Vcf.pm line 266.\r\nSubroutine next_line redefined at /Library/Perl/5.18/Vcf.pm line 286.\r\nSubroutine _unread_line redefined at /Library/Perl/5.18/Vcf.pm line 316.\r\nSubroutine next_data_array redefined at /Library/Perl/5.18/Vcf.pm line 334.\r\nSubroutine set_samples redefined at /Library/Perl/5.18/Vcf.pm line 358.\r\nSubroutine _set_version redefined at /Library/Perl/5.18/Vcf.pm line 386.\r\nUse of uninitialized value $Vcf::VERSION in concatenation (.) or string at /usr/local/bin/vcf-isec line 52.\r\nCan't locate object method \"new\" via package \"Vcf\" at /usr/local/bin/vcf-isec line 212.\r\n```\r\n\r\nI have tried running a couple of other scripts with similar result.\r\n\r\nThanks"}}