{"action":"created","issue":{"url":"https://api.github.com/repos/abyzovlab/CNVnator/issues/49","repository_url":"https://api.github.com/repos/abyzovlab/CNVnator","labels_url":"https://api.github.com/repos/abyzovlab/CNVnator/issues/49/labels{/name}","comments_url":"https://api.github.com/repos/abyzovlab/CNVnator/issues/49/comments","events_url":"https://api.github.com/repos/abyzovlab/CNVnator/issues/49/events","html_url":"https://github.com/abyzovlab/CNVnator/issues/49","id":192878364,"number":49,"title":"Using multi-cores for computation?","user":{"login":"biocyberman","id":447942,"avatar_url":"https://avatars.githubusercontent.com/u/447942?v=3","gravatar_id":"","url":"https://api.github.com/users/biocyberman","html_url":"https://github.com/biocyberman","followers_url":"https://api.github.com/users/biocyberman/followers","following_url":"https://api.github.com/users/biocyberman/following{/other_user}","gists_url":"https://api.github.com/users/biocyberman/gists{/gist_id}","starred_url":"https://api.github.com/users/biocyberman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biocyberman/subscriptions","organizations_url":"https://api.github.com/users/biocyberman/orgs","repos_url":"https://api.github.com/users/biocyberman/repos","events_url":"https://api.github.com/users/biocyberman/events{/privacy}","received_events_url":"https://api.github.com/users/biocyberman/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-12-01T15:32:00Z","updated_at":"2016-12-01T16:57:29Z","closed_at":null,"body":"I have 16 cores on my server and 192GB of RAM. I am running a test run and see CNVnator only use one core. Is it possible to setup CNVnator so that it uses multiple cores and more RAM to speed up calculation?\r\n\r\nI may also try the OpenMP option, but still prefer running on one host first.  "},"comment":{"url":"https://api.github.com/repos/abyzovlab/CNVnator/issues/comments/264228931","html_url":"https://github.com/abyzovlab/CNVnator/issues/49#issuecomment-264228931","issue_url":"https://api.github.com/repos/abyzovlab/CNVnator/issues/49","id":264228931,"user":{"login":"abyzov","id":9872185,"avatar_url":"https://avatars.githubusercontent.com/u/9872185?v=3","gravatar_id":"","url":"https://api.github.com/users/abyzov","html_url":"https://github.com/abyzov","followers_url":"https://api.github.com/users/abyzov/followers","following_url":"https://api.github.com/users/abyzov/following{/other_user}","gists_url":"https://api.github.com/users/abyzov/gists{/gist_id}","starred_url":"https://api.github.com/users/abyzov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/abyzov/subscriptions","organizations_url":"https://api.github.com/users/abyzov/orgs","repos_url":"https://api.github.com/users/abyzov/repos","events_url":"https://api.github.com/users/abyzov/events{/privacy}","received_events_url":"https://api.github.com/users/abyzov/received_events","type":"User","site_admin":false},"created_at":"2016-12-01T16:57:29Z","updated_at":"2016-12-01T16:57:29Z","body":"Hi,\nparallel calculation are implemented for the -partition step only. This is the most time consuming step.\nAlso, one have to use OpenMP option during compilation.\n\nAlexej Abyzov, Ph.D.\nSenior Associate Consultant,\nAssistant Professor of Biomedical Informatics,\nDepartment of Health Sciences Research,\nCenter for Individualized Medicine, Mayo Clinic\n-----------------------------\nMayo Clinic, Harwick 3-12\n200 1st street SW, Rochester, MN 55905\ntel: +1-(507)-538-0978\nfax: +1-(507)-284-0745\n\n\n"}}
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