{"action":"created","issue":{"url":"https://api.github.com/repos/soedinglab/bbcontacts/issues/3","repository_url":"https://api.github.com/repos/soedinglab/bbcontacts","labels_url":"https://api.github.com/repos/soedinglab/bbcontacts/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/soedinglab/bbcontacts/issues/3/comments","events_url":"https://api.github.com/repos/soedinglab/bbcontacts/issues/3/events","html_url":"https://github.com/soedinglab/bbcontacts/issues/3","id":170355723,"number":3,"title":"Incorrect config paths","user":{"login":"fsimkovic","id":6966675,"avatar_url":"https://avatars.githubusercontent.com/u/6966675?v=3","gravatar_id":"","url":"https://api.github.com/users/fsimkovic","html_url":"https://github.com/fsimkovic","followers_url":"https://api.github.com/users/fsimkovic/followers","following_url":"https://api.github.com/users/fsimkovic/following{/other_user}","gists_url":"https://api.github.com/users/fsimkovic/gists{/gist_id}","starred_url":"https://api.github.com/users/fsimkovic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fsimkovic/subscriptions","organizations_url":"https://api.github.com/users/fsimkovic/orgs","repos_url":"https://api.github.com/users/fsimkovic/repos","events_url":"https://api.github.com/users/fsimkovic/events{/privacy}","received_events_url":"https://api.github.com/users/fsimkovic/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-08-10T08:03:02Z","updated_at":"2016-08-10T13:39:49Z","closed_at":"2016-08-10T13:39:49Z","body":"Commit b273931451b0d794d13683afde422764cb72803b created a bug on my Ubuntu machine.  \r\n\r\n```\r\nadenine: felix: ~/develop/bbcontacts > bbcontacts example/1nz0D.mat 0.376 1nz0D -p example/1nz0D.psipred\r\n/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts\r\n\r\nStarting run 1nz0D 0.376\r\nTraceback (most recent call last):\r\n  File \"/home/felix/anaconda/bin/bbcontacts\", line 9, in <module>\r\n    load_entry_point('bbcontacts', 'console_scripts', 'bbcontacts')()\r\n  File \"/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts/main.py\", line 146, in main\r\n    secprobdic = paramshmm.getSecondaryStructureProbabilities(condsecstructprobPSIPREDfile)\r\n  File \"/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts/hmm/paramshmm.py\", line 58, in getSecondaryStructureProbabilities\r\n    with open(inputfile,\"r\") as f:\r\nIOError: [Errno 2] No such file or directory: '/home/felix/anaconda/lib/python2.7/site-packages/bbcontacts-1.0-py2.7.egg/bbcontacts/bbcontacts/paramfiles/secondaryStructureProbabilities_PSIPRED_conditionalwith10000pseudocounts.txt'\r\n```\r\n\r\nI think the paths should be ``paramfiles/secondaryStructureProbabilities_PSIPRED_conditionalwith10000pseudocounts.txt``.\r\n\r\nDo you observe the same issue @jessica-andreani ?"},"comment":{"url":"https://api.github.com/repos/soedinglab/bbcontacts/issues/comments/238869316","html_url":"https://github.com/soedinglab/bbcontacts/issues/3#issuecomment-238869316","issue_url":"https://api.github.com/repos/soedinglab/bbcontacts/issues/3","id":238869316,"user":{"login":"fsimkovic","id":6966675,"avatar_url":"https://avatars.githubusercontent.com/u/6966675?v=3","gravatar_id":"","url":"https://api.github.com/users/fsimkovic","html_url":"https://github.com/fsimkovic","followers_url":"https://api.github.com/users/fsimkovic/followers","following_url":"https://api.github.com/users/fsimkovic/following{/other_user}","gists_url":"https://api.github.com/users/fsimkovic/gists{/gist_id}","starred_url":"https://api.github.com/users/fsimkovic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fsimkovic/subscriptions","organizations_url":"https://api.github.com/users/fsimkovic/orgs","repos_url":"https://api.github.com/users/fsimkovic/repos","events_url":"https://api.github.com/users/fsimkovic/events{/privacy}","received_events_url":"https://api.github.com/users/fsimkovic/received_events","type":"User","site_admin":false},"created_at":"2016-08-10T13:39:49Z","updated_at":"2016-08-10T13:39:49Z","body":"Thanks @jessica-andreani. Both example command lines work!"}}
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