{"push_id":1248858355,"size":4,"distinct_size":4,"ref":"refs/heads/develop","head":"54d48dbaf1af9360af550bfc6f10c5d4e432f527","before":"2f873541d3c405a0eaca5aede05566dea94100cd","commits":[{"sha":"310038057862f29093d1373b4cb12a4a05a9115e","author":{"name":"Robert Delgado","email":"959871f6706d15c75ba679b03a020bbd34d273f7@yahoo.com"},"message":"qcprot does not need a transpose anymore\n\n- keep float64 to maintain precision to 1e-10;\n  using float32 decreases it to 1e-5 or even 1e-4\n- input arrays should now be (N, 3) instead of (3, N):\n  this saves two transposes and gains up to about 30% in speed\n- added tests and updated existing tests","distinct":true,"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/commits/310038057862f29093d1373b4cb12a4a05a9115e"},{"sha":"efdd22f060c81b40a343578cae2aa070badb9a9f","author":{"name":"Robert Delgado","email":"959871f6706d15c75ba679b03a020bbd34d273f7@yahoo.com"},"message":"changed analysis code to use new qcprot (no transposes)\n\n- code in align and rms\n- adapted test case\n- Changed rms.py so that there are no more .T's.\n- updated docs everywhere","distinct":true,"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/commits/efdd22f060c81b40a343578cae2aa070badb9a9f"},{"sha":"88664cac3cb4be7bb9cf9a0726828d178544b1ae","author":{"name":"Robert Delgado","email":"959871f6706d15c75ba679b03a020bbd34d273f7@yahoo.com"},"message":"Finalized qcprot. Various cleanups.\n- Modularized tests for qcprot.\n- Cleaned up variable names.\n- PEP8 compliant.\n- Added the change in qcprot to CHANGELOG where it now uses N x 3\n  arrays instead of 3 x N.\n- Added Robert Delgado to authors.","distinct":true,"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/commits/88664cac3cb4be7bb9cf9a0726828d178544b1ae"},{"sha":"54d48dbaf1af9360af550bfc6f10c5d4e432f527","author":{"name":"Oliver Beckstein","email":"5e4d81c2f58e316bb36da17b18dcd5cf70e3f66c@gmail.com"},"message":"Merge pull request #930 from rbrtdlgd/qcprot\n\nInput coordinate arrays for qcprot do not need to be transposed anymore. Speed up between 20% to 40%.\r\n\r\n- keep float64 to maintain precision to 1e-10;\r\n  using float32 decreases it to 1e-5 or even 1e-4\r\n- input arrays should now be (N, 3) instead of (3, N):\r\n  this saves two transposes and gains up to about 30% in speed\r\n- added tests and updated existing tests\r\n\r\n* changed analysis code to use new qcprot (no transposes)\r\n\r\n- code in align and rms\r\n- adapted test case\r\n- Changed rms.py so that there are no more .T's.\r\n- updated docs everywhere\r\n\r\n* Finalized qcprot. Various cleanups.\r\n- Modularized tests for qcprot.\r\n- Cleaned up variable names.\r\n- PEP8 compliant.\r\n- Added the change in qcprot to CHANGELOG where it now uses N x 3\r\n  arrays instead of 3 x N.\r\n- Added Robert Delgado to authors.","distinct":true,"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/commits/54d48dbaf1af9360af550bfc6f10c5d4e432f527"}]}
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