{"action":"created","comment":{"url":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/comments/85144196","pull_request_review_id":5876338,"id":85144196,"diff_hunk":"@@ -0,0 +1,52 @@\n+/*\n+ * Copyright 2016 University of Basel, Graphics and Vision Research Group\n+ *\n+ * Licensed under the Apache License, Version 2.0 (the \"License\");\n+ * you may not use this file except in compliance with the License.\n+ * You may obtain a copy of the License at\n+ *\n+ *     http://www.apache.org/licenses/LICENSE-2.0\n+ *\n+ * Unless required by applicable law or agreed to in writing, software\n+ * distributed under the License is distributed on an \"AS IS\" BASIS,\n+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n+ * See the License for the specific language governing permissions and\n+ * limitations under the License.\n+ */\n+package scalismo.mesh\n+\n+import scalismo.common.PointId\n+import scalismo.geometry.{ Point, Vector, _3D }\n+import scalismo.mesh.boundingSpheres._\n+\n+object MeshOperations {\n+  def apply(mesh: TriangleMesh3D) = new TriangleMesh3DOperations(mesh)\n+}\n+\n+class TriangleMesh3DOperations(mesh: TriangleMesh3D) {\n+\n+  /**\n+   * Bounding spheres based mesh operations\n+   */\n+  private lazy val triangles = BoundingSpheres.triangleListFromTriangleMesh3D(mesh)\n+  private lazy val boundingSpheres = BoundingSpheres.createForTriangles(triangles)\n+\n+  private lazy val intersect: TriangulatedSurfaceIntersectionIndex[_3D] = new LineTriangleMesh3DIntersectionIndex(boundingSpheres, mesh, triangles)\n+  def hasIntersection(point: Point[_3D], direction: Vector[_3D]) = intersect.hasIntersection(point, direction)\n+  def getIntersectionPoints(point: Point[_3D], direction: Vector[_3D]): Seq[Point[_3D]] = intersect.getIntersectionPoints(point, direction)\n+  def getIntersectionPointsOnSurface(point: Point[_3D], direction: Vector[_3D]): Seq[(TriangleId, BarycentricCoordinates)] = intersect.getSurfaceIntersectionPoints(point, direction)\n+\n+  private lazy val closestPointOnSurface: SurfaceSpatialIndex[_3D] = new TriangleMesh3DSpatialIndex(boundingSpheres, mesh, triangles)\n+  def shortestDistanceToSurface(point: Point[_3D]): Double = closestPointOnSurface.getSquaredShortestDistance(point: Point[_3D])\n+  def closestPointOnSurfaceWithSquaredDistance(point: Point[_3D]): (Point[_3D], Double) = closestPointOnSurface.getClosestPoint(point)\n+  def closestPointOnSurface(point: Point[_3D]): ClosestPoint = closestPointOnSurface.getClosestPointMeta(point)","path":"src/main/scala/scalismo/mesh/MeshOperations.scala","position":48,"original_position":42,"commit_id":"82e8cd78f432597bc30cec810f1b540b75993ef3","original_commit_id":"f3c56ceaed199ef32802f603fa252cfa3a2d9d67","user":{"login":"Andreas-Forster","id":4980582,"avatar_url":"https://avatars.githubusercontent.com/u/4980582?v=3","gravatar_id":"","url":"https://api.github.com/users/Andreas-Forster","html_url":"https://github.com/Andreas-Forster","followers_url":"https://api.github.com/users/Andreas-Forster/followers","following_url":"https://api.github.com/users/Andreas-Forster/following{/other_user}","gists_url":"https://api.github.com/users/Andreas-Forster/gists{/gist_id}","starred_url":"https://api.github.com/users/Andreas-Forster/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Andreas-Forster/subscriptions","organizations_url":"https://api.github.com/users/Andreas-Forster/orgs","repos_url":"https://api.github.com/users/Andreas-Forster/repos","events_url":"https://api.github.com/users/Andreas-Forster/events{/privacy}","received_events_url":"https://api.github.com/users/Andreas-Forster/received_events","type":"User","site_admin":false},"body":"If you look at it from the side of a Triangulated Surface it might be also interesting to know in which triangle it lies and which barycentric coordinates it has or if it is one of the verticies or on a line connecting two vertices. This is solved by the type ClosestPoint. Maybe we can rename this to ClosestPointDescription. Would that help?","created_at":"2016-10-26T15:05:11Z","updated_at":"2016-10-26T15:05:11Z","html_url":"https://github.com/unibas-gravis/scalismo/pull/165#discussion_r85144196","pull_request_url":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/165","_links":{"self":{"href":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/comments/85144196"},"html":{"href":"https://github.com/unibas-gravis/scalismo/pull/165#discussion_r85144196"},"pull_request":{"href":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/165"}}},"pull_request":{"url":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/165","id":90038987,"html_url":"https://github.com/unibas-gravis/scalismo/pull/165","diff_url":"https://github.com/unibas-gravis/scalismo/pull/165.diff","patch_url":"https://github.com/unibas-gravis/scalismo/pull/165.patch","issue_url":"https://api.github.com/repos/unibas-gravis/scalismo/issues/165","number":165,"state":"open","locked":false,"title":"MeshOperations","user":{"login":"Andreas-Forster","id":4980582,"avatar_url":"https://avatars.githubusercontent.com/u/4980582?v=3","gravatar_id":"","url":"https://api.github.com/users/Andreas-Forster","html_url":"https://github.com/Andreas-Forster","followers_url":"https://api.github.com/users/Andreas-Forster/followers","following_url":"https://api.github.com/users/Andreas-Forster/following{/other_user}","gists_url":"https://api.github.com/users/Andreas-Forster/gists{/gist_id}","starred_url":"https://api.github.com/users/Andreas-Forster/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Andreas-Forster/subscriptions","organizations_url":"https://api.github.com/users/Andreas-Forster/orgs","repos_url":"https://api.github.com/users/Andreas-Forster/repos","events_url":"https://api.github.com/users/Andreas-Forster/events{/privacy}","received_events_url":"https://api.github.com/users/Andreas-Forster/received_events","type":"User","site_admin":false},"body":"As discussed offline i started this branch as a discussion basis. Yet I only moved the intersect and closestPointOnSurface operations to the MeshOperation class. The important changes are in:\r\n- MeshOperations \r\n- TriangleMesh\r\n\r\nFunctionality in MeshOperations:\r\n- Intersect\r\n- ClosestPoint\r\n- MeshBoundaryPredicate","created_at":"2016-10-19T15:55:16Z","updated_at":"2016-10-26T15:05:11Z","closed_at":null,"merged_at":null,"merge_commit_sha":"3db28439ad7ce87a5ce5cd23233c230871f3ce5e","assignee":{"login":"marcelluethi","id":1332115,"avatar_url":"https://avatars.githubusercontent.com/u/1332115?v=3","gravatar_id":"","url":"https://api.github.com/users/marcelluethi","html_url":"https://github.com/marcelluethi","followers_url":"https://api.github.com/users/marcelluethi/followers","following_url":"https://api.github.com/users/marcelluethi/following{/other_user}","gists_url":"https://api.github.com/users/marcelluethi/gists{/gist_id}","starred_url":"https://api.github.com/users/marcelluethi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marcelluethi/subscriptions","organizations_url":"https://api.github.com/users/marcelluethi/orgs","repos_url":"https://api.github.com/users/marcelluethi/repos","events_url":"https://api.github.com/users/marcelluethi/events{/privacy}","received_events_url":"https://api.github.com/users/marcelluethi/received_events","type":"User","site_admin":false},"assignees":[{"login":"marcelluethi","id":1332115,"avatar_url":"https://avatars.githubusercontent.com/u/1332115?v=3","gravatar_id":"","url":"https://api.github.com/users/marcelluethi","html_url":"https://github.com/marcelluethi","followers_url":"https://api.github.com/users/marcelluethi/followers","following_url":"https://api.github.com/users/marcelluethi/following{/other_user}","gists_url":"https://api.github.com/users/marcelluethi/gists{/gist_id}","starred_url":"https://api.github.com/users/marcelluethi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marcelluethi/subscriptions","organizations_url":"https://api.github.com/users/marcelluethi/orgs","repos_url":"https://api.github.com/users/marcelluethi/repos","events_url":"https://api.github.com/users/marcelluethi/events{/privacy}","received_events_url":"https://api.github.com/users/marcelluethi/received_events","type":"User","site_admin":false},{"login":"sschoenborn","id":8012444,"avatar_url":"https://avatars.githubusercontent.com/u/8012444?v=3","gravatar_id":"","url":"https://api.github.com/users/sschoenborn","html_url":"https://github.com/sschoenborn","followers_url":"https://api.github.com/users/sschoenborn/followers","following_url":"https://api.github.com/users/sschoenborn/following{/other_user}","gists_url":"https://api.github.com/users/sschoenborn/gists{/gist_id}","starred_url":"https://api.github.com/users/sschoenborn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sschoenborn/subscriptions","organizations_url":"https://api.github.com/users/sschoenborn/orgs","repos_url":"https://api.github.com/users/sschoenborn/repos","events_url":"https://api.github.com/users/sschoenborn/events{/privacy}","received_events_url":"https://api.github.com/users/sschoenborn/received_events","type":"User","site_admin":false},{"login":"Ghazi-Bouabene","id":10944449,"avatar_url":"https://avatars.githubusercontent.com/u/10944449?v=3","gravatar_id":"","url":"https://api.github.com/users/Ghazi-Bouabene","html_url":"https://github.com/Ghazi-Bouabene","followers_url":"https://api.github.com/users/Ghazi-Bouabene/followers","following_url":"https://api.github.com/users/Ghazi-Bouabene/following{/other_user}","gists_url":"https://api.github.com/users/Ghazi-Bouabene/gists{/gist_id}","starred_url":"https://api.github.com/users/Ghazi-Bouabene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Ghazi-Bouabene/subscriptions","organizations_url":"https://api.github.com/users/Ghazi-Bouabene/orgs","repos_url":"https://api.github.com/users/Ghazi-Bouabene/repos","events_url":"https://api.github.com/users/Ghazi-Bouabene/events{/privacy}","received_events_url":"https://api.github.com/users/Ghazi-Bouabene/received_events","type":"User","site_admin":false}],"milestone":null,"commits_url":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/165/commits","review_comments_url":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/165/comments","review_comment_url":"https://api.github.com/repos/unibas-gravis/scalismo/pulls/comments{/number}","comments_url":"https://api.github.com/repos/unibas-gravis/scalismo/issues/165/comments","statuses_url":"https://api.github.com/repos/unibas-gravis/scalismo/statuses/82e8cd78f432597bc30cec810f1b540b75993ef3","head":{"label":"unibas-gravis:meshOperations","ref":"meshOperations","sha":"82e8cd78f432597bc30cec810f1b540b75993ef3","user":{"login":"unibas-gravis","id":2787582,"avatar_url":"https://avatars.githubusercontent.com/u/2787582?v=3","gravatar_id":"","url":"https://api.github.com/users/unibas-gravis","html_url":"https://github.com/unibas-gravis","followers_url":"https://api.github.com/users/unibas-gravis/followers","following_url":"https://api.github.com/users/unibas-gravis/following{/other_user}","gists_url":"https://api.github.com/users/unibas-gravis/gists{/gist_id}","starred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