{"action":"opened","issue":{"url":"https://api.github.com/repos/cryoem-uoft/cryosparc-issues/issues/97","repository_url":"https://api.github.com/repos/cryoem-uoft/cryosparc-issues","labels_url":"https://api.github.com/repos/cryoem-uoft/cryosparc-issues/issues/97/labels{/name}","comments_url":"https://api.github.com/repos/cryoem-uoft/cryosparc-issues/issues/97/comments","events_url":"https://api.github.com/repos/cryoem-uoft/cryosparc-issues/issues/97/events","html_url":"https://github.com/cryoem-uoft/cryosparc-issues/issues/97","id":195677854,"number":97,"title":"Contrast getting inverted for refinement","user":{"login":"mbrubake","id":3383416,"avatar_url":"https://avatars.githubusercontent.com/u/3383416?v=3","gravatar_id":"","url":"https://api.github.com/users/mbrubake","html_url":"https://github.com/mbrubake","followers_url":"https://api.github.com/users/mbrubake/followers","following_url":"https://api.github.com/users/mbrubake/following{/other_user}","gists_url":"https://api.github.com/users/mbrubake/gists{/gist_id}","starred_url":"https://api.github.com/users/mbrubake/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mbrubake/subscriptions","organizations_url":"https://api.github.com/users/mbrubake/orgs","repos_url":"https://api.github.com/users/mbrubake/repos","events_url":"https://api.github.com/users/mbrubake/events{/privacy}","received_events_url":"https://api.github.com/users/mbrubake/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-12-14T23:43:09Z","updated_at":"2016-12-14T23:43:09Z","closed_at":null,"body":"Two different users with two different datasets have seen contrast get inverted for refinement.  In both cases the dataset sign appears to be set correctly and ab initio runs appear to work fine but when switching to refinement, the map gets flipped. @zrip @johnrubinstein @alipunjani Has anyone else seen this kind of behaviour?  There's very little consistency.  One was with a PAR file, another was with a STAR file.  Flipping the datasign doesn't fix things either."}}
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