{"action":"created","issue":{"url":"https://api.github.com/repos/machinegun/hi-c-scaffold/issues/6","repository_url":"https://api.github.com/repos/machinegun/hi-c-scaffold","labels_url":"https://api.github.com/repos/machinegun/hi-c-scaffold/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/machinegun/hi-c-scaffold/issues/6/comments","events_url":"https://api.github.com/repos/machinegun/hi-c-scaffold/issues/6/events","html_url":"https://github.com/machinegun/hi-c-scaffold/issues/6","id":189277204,"number":6,"title":"break_contigs.py  error","user":{"login":"liufuyan2016","id":23466455,"avatar_url":"https://avatars.githubusercontent.com/u/23466455?v=3","gravatar_id":"","url":"https://api.github.com/users/liufuyan2016","html_url":"https://github.com/liufuyan2016","followers_url":"https://api.github.com/users/liufuyan2016/followers","following_url":"https://api.github.com/users/liufuyan2016/following{/other_user}","gists_url":"https://api.github.com/users/liufuyan2016/gists{/gist_id}","starred_url":"https://api.github.com/users/liufuyan2016/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/liufuyan2016/subscriptions","organizations_url":"https://api.github.com/users/liufuyan2016/orgs","repos_url":"https://api.github.com/users/liufuyan2016/repos","events_url":"https://api.github.com/users/liufuyan2016/events{/privacy}","received_events_url":"https://api.github.com/users/liufuyan2016/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-11-15T01:45:32Z","updated_at":"2016-11-16T03:57:30Z","closed_at":null,"body":"when I run the command :\r\npython hi-c-scaffold-master/break_contigs.py -b breakpoints -a genome.fa -o final.assembly  -l contig_length_new\r\n**Error occure as below** \r\nTraceback (most recent call last):\r\n  File hi-c-scaffold-master/break_contigs.py\", line 46, in <module>\r\n    main()\r\n  File \"hi-c-scaffold-master/break_contigs.py\", line 30, in main\r\n    seq = id2seq[curr_contig]\r\n**KeyError: '000003F_020|quiver'**\r\n Could you  help me? \r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/machinegun/hi-c-scaffold/issues/comments/260847610","html_url":"https://github.com/machinegun/hi-c-scaffold/issues/6#issuecomment-260847610","issue_url":"https://api.github.com/repos/machinegun/hi-c-scaffold/issues/6","id":260847610,"user":{"login":"machinegun","id":986664,"avatar_url":"https://avatars.githubusercontent.com/u/986664?v=3","gravatar_id":"","url":"https://api.github.com/users/machinegun","html_url":"https://github.com/machinegun","followers_url":"https://api.github.com/users/machinegun/followers","following_url":"https://api.github.com/users/machinegun/following{/other_user}","gists_url":"https://api.github.com/users/machinegun/gists{/gist_id}","starred_url":"https://api.github.com/users/machinegun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/machinegun/subscriptions","organizations_url":"https://api.github.com/users/machinegun/orgs","repos_url":"https://api.github.com/users/machinegun/repos","events_url":"https://api.github.com/users/machinegun/events{/privacy}","received_events_url":"https://api.github.com/users/machinegun/received_events","type":"User","site_admin":false},"created_at":"2016-11-16T03:57:30Z","updated_at":"2016-11-16T03:57:30Z","body":"We are working on some optimization parameters. Meanwhile, I can give a code that can plot the coverages for all contigs. With that, you can visually inspect if there is any mis-assembly. If you want that, give me your email id, I will send you instructions there."}}
{"actor":{"display_login":"machinegun"}}