{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/cromwell/issues/472","repository_url":"https://api.github.com/repos/broadinstitute/cromwell","labels_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/472/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/472/comments","events_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/472/events","html_url":"https://github.com/broadinstitute/cromwell/issues/472","id":136089024,"number":472,"title":"Cromwell expects docker images to be run as root user","user":{"login":"agduncan94","id":6331159,"avatar_url":"https://avatars.githubusercontent.com/u/6331159?v=3","gravatar_id":"","url":"https://api.github.com/users/agduncan94","html_url":"https://github.com/agduncan94","followers_url":"https://api.github.com/users/agduncan94/followers","following_url":"https://api.github.com/users/agduncan94/following{/other_user}","gists_url":"https://api.github.com/users/agduncan94/gists{/gist_id}","starred_url":"https://api.github.com/users/agduncan94/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/agduncan94/subscriptions","organizations_url":"https://api.github.com/users/agduncan94/orgs","repos_url":"https://api.github.com/users/agduncan94/repos","events_url":"https://api.github.com/users/agduncan94/events{/privacy}","received_events_url":"https://api.github.com/users/agduncan94/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-02-24T15:10:36Z","updated_at":"2016-10-14T17:59:45Z","closed_at":null,"body":"When running a docker image through Cromwell, it assumes that you are the root user for the docker container.\r\n\r\nI was trying to run a docker image which has to be run as a non-root user, so they don't have access to the root user home folder (/root).  The problem with this is that Cromwell will place any files you pass to the container in the /root directory, so you need to be the root user or else you will get a permission error."},"comment":{"url":"https://api.github.com/repos/broadinstitute/cromwell/issues/comments/253875404","html_url":"https://github.com/broadinstitute/cromwell/issues/472#issuecomment-253875404","issue_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/472","id":253875404,"user":{"login":"geoffjentry","id":961771,"avatar_url":"https://avatars.githubusercontent.com/u/961771?v=3","gravatar_id":"","url":"https://api.github.com/users/geoffjentry","html_url":"https://github.com/geoffjentry","followers_url":"https://api.github.com/users/geoffjentry/followers","following_url":"https://api.github.com/users/geoffjentry/following{/other_user}","gists_url":"https://api.github.com/users/geoffjentry/gists{/gist_id}","starred_url":"https://api.github.com/users/geoffjentry/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/geoffjentry/subscriptions","organizations_url":"https://api.github.com/users/geoffjentry/orgs","repos_url":"https://api.github.com/users/geoffjentry/repos","events_url":"https://api.github.com/users/geoffjentry/events{/privacy}","received_events_url":"https://api.github.com/users/geoffjentry/received_events","type":"User","site_admin":false},"created_at":"2016-10-14T17:59:44Z","updated_at":"2016-10-14T17:59:44Z","body":"@kcibul This is the ticket I mentioned the other day"}}
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