{"action":"created","issue":{"url":"https://api.github.com/repos/morrislab/phylowgs/issues/46","repository_url":"https://api.github.com/repos/morrislab/phylowgs","labels_url":"https://api.github.com/repos/morrislab/phylowgs/issues/46/labels{/name}","comments_url":"https://api.github.com/repos/morrislab/phylowgs/issues/46/comments","events_url":"https://api.github.com/repos/morrislab/phylowgs/issues/46/events","html_url":"https://github.com/morrislab/phylowgs/issues/46","id":185553663,"number":46,"title":"\"Clustered Trees\" View is empty and inferring sequence of mutations","user":{"login":"zafarali","id":6295292,"avatar_url":"https://avatars.githubusercontent.com/u/6295292?v=3","gravatar_id":"","url":"https://api.github.com/users/zafarali","html_url":"https://github.com/zafarali","followers_url":"https://api.github.com/users/zafarali/followers","following_url":"https://api.github.com/users/zafarali/following{/other_user}","gists_url":"https://api.github.com/users/zafarali/gists{/gist_id}","starred_url":"https://api.github.com/users/zafarali/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/zafarali/subscriptions","organizations_url":"https://api.github.com/users/zafarali/orgs","repos_url":"https://api.github.com/users/zafarali/repos","events_url":"https://api.github.com/users/zafarali/events{/privacy}","received_events_url":"https://api.github.com/users/zafarali/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-10-27T01:47:38Z","updated_at":"2016-12-27T01:55:10Z","closed_at":null,"body":"Hi,\n\n(1) My \"clustered trees\" view is empty. What am I supposed to see in this panel?\n(2) In your paper, Fig 4 and Fig 10 shows some inferred trees with the mutations superimposed. All I have is the number of SSMs assigned to each cluster. I was wondering where I can get the assignment of each SSM to the cluster? Am I supposed to calculate the CCF myself and assign it accordingly?\n\n![image](https://cloud.githubusercontent.com/assets/6295292/19751220/b4301d78-9bc5-11e6-9700-8fa21026e09c.png)\n\nThanks!\n"},"comment":{"url":"https://api.github.com/repos/morrislab/phylowgs/issues/comments/269257168","html_url":"https://github.com/morrislab/phylowgs/issues/46#issuecomment-269257168","issue_url":"https://api.github.com/repos/morrislab/phylowgs/issues/46","id":269257168,"user":{"login":"BhaktiDwivedi","id":10574965,"avatar_url":"https://avatars.githubusercontent.com/u/10574965?v=3","gravatar_id":"","url":"https://api.github.com/users/BhaktiDwivedi","html_url":"https://github.com/BhaktiDwivedi","followers_url":"https://api.github.com/users/BhaktiDwivedi/followers","following_url":"https://api.github.com/users/BhaktiDwivedi/following{/other_user}","gists_url":"https://api.github.com/users/BhaktiDwivedi/gists{/gist_id}","starred_url":"https://api.github.com/users/BhaktiDwivedi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BhaktiDwivedi/subscriptions","organizations_url":"https://api.github.com/users/BhaktiDwivedi/orgs","repos_url":"https://api.github.com/users/BhaktiDwivedi/repos","events_url":"https://api.github.com/users/BhaktiDwivedi/events{/privacy}","received_events_url":"https://api.github.com/users/BhaktiDwivedi/received_events","type":"User","site_admin":false},"created_at":"2016-12-27T01:55:10Z","updated_at":"2016-12-27T01:55:10Z","body":"I meant Figure 9 not Figure 10, i.e., the sub clonal composition inference for each tumor sample."}}
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