{"action":"created","issue":{"url":"https://api.github.com/repos/hall-lab/svtools/issues/46","repository_url":"https://api.github.com/repos/hall-lab/svtools","labels_url":"https://api.github.com/repos/hall-lab/svtools/issues/46/labels{/name}","comments_url":"https://api.github.com/repos/hall-lab/svtools/issues/46/comments","events_url":"https://api.github.com/repos/hall-lab/svtools/issues/46/events","html_url":"https://github.com/hall-lab/svtools/issues/46","id":134114842,"number":46,"title":"Off-by-one error in bedpetovcf","user":{"login":"lganel","id":1508825,"avatar_url":"https://avatars.githubusercontent.com/u/1508825?v=3","gravatar_id":"","url":"https://api.github.com/users/lganel","html_url":"https://github.com/lganel","followers_url":"https://api.github.com/users/lganel/followers","following_url":"https://api.github.com/users/lganel/following{/other_user}","gists_url":"https://api.github.com/users/lganel/gists{/gist_id}","starred_url":"https://api.github.com/users/lganel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lganel/subscriptions","organizations_url":"https://api.github.com/users/lganel/orgs","repos_url":"https://api.github.com/users/lganel/repos","events_url":"https://api.github.com/users/lganel/events{/privacy}","received_events_url":"https://api.github.com/users/lganel/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-02-16T22:31:20Z","updated_at":"2016-02-22T20:18:44Z","closed_at":null,"body":"bedpetovcf has an off-by-one error. Calling vcftobedpe followed by bedpetovcf reduces the POS by 1. It seems like this issue is limited to BNDs.\r\nThis arose because of commit c1638818018879226ae4fe390353c9a4b7f94c7d, which fixed an off-by-one error in vcftobedpe."},"comment":{"url":"https://api.github.com/repos/hall-lab/svtools/issues/comments/187366774","html_url":"https://github.com/hall-lab/svtools/issues/46#issuecomment-187366774","issue_url":"https://api.github.com/repos/hall-lab/svtools/issues/46","id":187366774,"user":{"login":"lganel","id":1508825,"avatar_url":"https://avatars.githubusercontent.com/u/1508825?v=3","gravatar_id":"","url":"https://api.github.com/users/lganel","html_url":"https://github.com/lganel","followers_url":"https://api.github.com/users/lganel/followers","following_url":"https://api.github.com/users/lganel/following{/other_user}","gists_url":"https://api.github.com/users/lganel/gists{/gist_id}","starred_url":"https://api.github.com/users/lganel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lganel/subscriptions","organizations_url":"https://api.github.com/users/lganel/orgs","repos_url":"https://api.github.com/users/lganel/repos","events_url":"https://api.github.com/users/lganel/events{/privacy}","received_events_url":"https://api.github.com/users/lganel/received_events","type":"User","site_admin":false},"created_at":"2016-02-22T20:18:43Z","updated_at":"2016-02-22T20:18:43Z","body":"The POS looks right to me now (VCF -> BEDPE -> VCF doesn't change the POS). I haven't looked into the confidence intervals."}}