{"action":"created","issue":{"url":"https://api.github.com/repos/salilab/pmi/issues/173","repository_url":"https://api.github.com/repos/salilab/pmi","labels_url":"https://api.github.com/repos/salilab/pmi/issues/173/labels{/name}","comments_url":"https://api.github.com/repos/salilab/pmi/issues/173/comments","events_url":"https://api.github.com/repos/salilab/pmi/issues/173/events","html_url":"https://github.com/salilab/pmi/issues/173","id":134725555,"number":173,"title":"psf writing in Output segfaults with gaussians in hierarchy","user":{"login":"saltzberg","id":7268032,"avatar_url":"https://avatars.githubusercontent.com/u/7268032?v=3","gravatar_id":"","url":"https://api.github.com/users/saltzberg","html_url":"https://github.com/saltzberg","followers_url":"https://api.github.com/users/saltzberg/followers","following_url":"https://api.github.com/users/saltzberg/following{/other_user}","gists_url":"https://api.github.com/users/saltzberg/gists{/gist_id}","starred_url":"https://api.github.com/users/saltzberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/saltzberg/subscriptions","organizations_url":"https://api.github.com/users/saltzberg/orgs","repos_url":"https://api.github.com/users/saltzberg/repos","events_url":"https://api.github.com/users/saltzberg/events{/privacy}","received_events_url":"https://api.github.com/users/saltzberg/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":10,"created_at":"2016-02-18T23:08:44Z","updated_at":"2016-02-23T19:49:23Z","closed_at":null,"body":"Test added in 3279018388f1d9e6270815f37bdd0baea03f4b5b.  Sorry, it's a segFault test.  \r\n\r\nI've added Gaussians to the PMI2 hierarchy using `gemt.add_target_density_to_hierarchy(st1.get_hierarchy())` and now when writing PSF files, I get a segfault that I've narrowed down to inside `Output.get_particles_for_pdb_writing()`. "},"comment":{"url":"https://api.github.com/repos/salilab/pmi/issues/comments/187873435","html_url":"https://github.com/salilab/pmi/issues/173#issuecomment-187873435","issue_url":"https://api.github.com/repos/salilab/pmi/issues/173","id":187873435,"user":{"login":"cgreenberg","id":1170706,"avatar_url":"https://avatars.githubusercontent.com/u/1170706?v=3","gravatar_id":"","url":"https://api.github.com/users/cgreenberg","html_url":"https://github.com/cgreenberg","followers_url":"https://api.github.com/users/cgreenberg/followers","following_url":"https://api.github.com/users/cgreenberg/following{/other_user}","gists_url":"https://api.github.com/users/cgreenberg/gists{/gist_id}","starred_url":"https://api.github.com/users/cgreenberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cgreenberg/subscriptions","organizations_url":"https://api.github.com/users/cgreenberg/orgs","repos_url":"https://api.github.com/users/cgreenberg/repos","events_url":"https://api.github.com/users/cgreenberg/events{/privacy}","received_events_url":"https://api.github.com/users/cgreenberg/received_events","type":"User","site_admin":false},"created_at":"2016-02-23T19:49:23Z","updated_at":"2016-02-23T19:49:23Z","body":"Note that you'll need the changes I just committed to `atom` for things to work. Sorry."}}