{"action":"created","comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/comments/50801936","id":50801936,"diff_hunk":"@@ -0,0 +1,70 @@\n+<tool id=\"gemini_@BINARY@\" name=\"GEMINI @BINARY@\" version=\"@VERSION@.0\">\n+    <description>Amend an already loaded GEMINI database.</description>\n+    <macros>\n+        <import>gemini_macros.xml</import>\n+        <token name=\"@BINARY@\">amend</token>\n+    </macros>\n+    <expand macro=\"requirements\" />\n+    <expand macro=\"stdio\" />\n+    <expand macro=\"version_command\" />\n+    <command>\n+<![CDATA[\n+        cp \"${ infile }\" \"${ outfile }\" &&\n+\n+        gemini @BINARY@\n+        $clear\n+        --sample \"${ ped }\"\n+\n+        \"${ outfile }\"\n+]]>\n+    </command>\n+    <inputs>\n+\n+        <expand macro=\"infile\" />\n+        <param name=\"ped\" type=\"data\" format=\"tabular\" optional=\"True\" label=\"Additional sample information file in PED+ format\" help=\"(--sample)\" />\n+        <param argument=\"--clear\" type=\"boolean\" truevalue=\"--clear\" falsevalue=\"\" checked=\"False\" label=\"Set all values to None before loading\" help=\"Makes it possible to delete values. Otherwise the old ones are 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`name=\"clear\"` deduced from `argument=\"--clear\"` or is it missing?","created_at":"2016-01-26T07:28:49Z","updated_at":"2016-01-26T07:28:49Z","html_url":"https://github.com/galaxyproject/tools-iuc/pull/534#discussion_r50801936","pull_request_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/534","_links":{"self":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/comments/50801936"},"html":{"href":"https://github.com/galaxyproject/tools-iuc/pull/534#discussion_r50801936"},"pull_request":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/534"}}},"pull_request":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/534","id":55736597,"html_url":"https://github.com/galaxyproject/tools-iuc/pull/534","diff_url":"https://github.com/galaxyproject/tools-iuc/pull/534.diff","patch_url":"https://github.com/galaxyproject/tools-iuc/pull/534.patch","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/534","number":534,"state":"open","locked":false,"title":"Gemini update to latest 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