{"action":"opened","issue":{"url":"https://api.github.com/repos/monarch-initiative/phenopacket-format/issues/21","repository_url":"https://api.github.com/repos/monarch-initiative/phenopacket-format","labels_url":"https://api.github.com/repos/monarch-initiative/phenopacket-format/issues/21/labels{/name}","comments_url":"https://api.github.com/repos/monarch-initiative/phenopacket-format/issues/21/comments","events_url":"https://api.github.com/repos/monarch-initiative/phenopacket-format/issues/21/events","html_url":"https://github.com/monarch-initiative/phenopacket-format/issues/21","id":132862474,"number":21,"title":"Suggestion for output format","user":{"login":"pnrobinson","id":4943420,"avatar_url":"https://avatars.githubusercontent.com/u/4943420?v=3","gravatar_id":"","url":"https://api.github.com/users/pnrobinson","html_url":"https://github.com/pnrobinson","followers_url":"https://api.github.com/users/pnrobinson/followers","following_url":"https://api.github.com/users/pnrobinson/following{/other_user}","gists_url":"https://api.github.com/users/pnrobinson/gists{/gist_id}","starred_url":"https://api.github.com/users/pnrobinson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pnrobinson/subscriptions","organizations_url":"https://api.github.com/users/pnrobinson/orgs","repos_url":"https://api.github.com/users/pnrobinson/repos","events_url":"https://api.github.com/users/pnrobinson/events{/privacy}","received_events_url":"https://api.github.com/users/pnrobinson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-02-11T00:50:10Z","updated_at":"2016-02-11T00:50:10Z","closed_at":null,"body":"Hi Tudor,\r\nas we are discussing right now here are some suggestions\r\n\r\n1. Allow users to upload either word or to paste in text into a window.\r\n2. After initial text mining, it is an issue that a paper may describe two or more patients. It would be useful to find a way for users to assign mined HPO terms to individual patients. One simple thing is to allow a user to mark part of the text that pertains to a single patient. Or allow users to enter the name of all patients described in an article and have the GUI present a table like this\r\n\r\n\r\n          * patient ID 1 * patient ID 2 * patients ID 3\r\nHP1     *       x          *                   *         x       \r\nHP2     *       x          *           x        *         x       \r\nHP3     *                   *                   *         x       \r\n\r\netc\r\n\r\neach HP is the ID and prefered name of one of the mined terms. It should be possible to delete entire rows if the HPO term was a false positive."}}