{"action":"created","issue":{"url":"https://api.github.com/repos/enormandeau/mapcomp/issues/1","repository_url":"https://api.github.com/repos/enormandeau/mapcomp","labels_url":"https://api.github.com/repos/enormandeau/mapcomp/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/enormandeau/mapcomp/issues/1/comments","events_url":"https://api.github.com/repos/enormandeau/mapcomp/issues/1/events","html_url":"https://github.com/enormandeau/mapcomp/issues/1","id":139042157,"number":1,"title":"Hard coded name is a problem","user":{"login":"sletort","id":10599211,"avatar_url":"https://avatars.githubusercontent.com/u/10599211?v=3","gravatar_id":"","url":"https://api.github.com/users/sletort","html_url":"https://github.com/sletort","followers_url":"https://api.github.com/users/sletort/followers","following_url":"https://api.github.com/users/sletort/following{/other_user}","gists_url":"https://api.github.com/users/sletort/gists{/gist_id}","starred_url":"https://api.github.com/users/sletort/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sletort/subscriptions","organizations_url":"https://api.github.com/users/sletort/orgs","repos_url":"https://api.github.com/users/sletort/repos","events_url":"https://api.github.com/users/sletort/events{/privacy}","received_events_url":"https://api.github.com/users/sletort/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-03-07T17:35:54Z","updated_at":"2016-03-07T17:58:35Z","closed_at":null,"body":"I'm writing bioconda file to in the end integrate mapcomp into a Galaxy instance.\r\nFor now, as the input and output are hard coded, it is impossible to integrate mapcomp easily.\r\n\r\nI'll modify almost all scripts to use more variable.\r\n\r\nI'm in a Galaxy hackathon event.\r\nhttp://cesgo.genouest.org/groups/guggo/wiki/RADseqHackathon\r\nhttps://github.com/galaxyproject/tools-iuc/issues/422\r\nhttps://trello.com/b/EfGYBOPX\r\n"},"comment":{"url":"https://api.github.com/repos/enormandeau/mapcomp/issues/comments/193371648","html_url":"https://github.com/enormandeau/mapcomp/issues/1#issuecomment-193371648","issue_url":"https://api.github.com/repos/enormandeau/mapcomp/issues/1","id":193371648,"user":{"login":"enormandeau","id":1437223,"avatar_url":"https://avatars.githubusercontent.com/u/1437223?v=3","gravatar_id":"","url":"https://api.github.com/users/enormandeau","html_url":"https://github.com/enormandeau","followers_url":"https://api.github.com/users/enormandeau/followers","following_url":"https://api.github.com/users/enormandeau/following{/other_user}","gists_url":"https://api.github.com/users/enormandeau/gists{/gist_id}","starred_url":"https://api.github.com/users/enormandeau/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/enormandeau/subscriptions","organizations_url":"https://api.github.com/users/enormandeau/orgs","repos_url":"https://api.github.com/users/enormandeau/repos","events_url":"https://api.github.com/users/enormandeau/events{/privacy}","received_events_url":"https://api.github.com/users/enormandeau/received_events","type":"User","site_admin":false},"created_at":"2016-03-07T17:58:35Z","updated_at":"2016-03-07T17:58:35Z","body":"Hi sletort. Interesting project. I chose to use hard coded names for the input and output so that a person could run mapcomp in one shot without having to do the different steps by hand, each time specifying input and output file names.\r\n\r\nI think the most minimal approach to modify this behaviour would be to only change the name of the input genome and csv file. These are really the only 2 input files for MapComp.\r\n\r\nLet me know how your Galaxy experiment works out!"}}