{"action":"created","comment":{"url":"https://api.github.com/repos/poldracklab/niworkflows/pulls/comments/92512763","pull_request_review_id":13029891,"id":92512763,"diff_hunk":"@@ -88,14 +89,40 @@ class ApplyTOPUPRPT(nrc.RegistrationRC, fsl.ApplyTOPUP):\n     output_spec = ApplyTOPUPOutputSpecRPT\n \n     def _post_run_hook(self, runtime):\n-        self._fixed_image_label = \"before\"\n-        self._moving_image_label = \"after\"\n-        self._fixed_image = index_img(self.inputs.in_files[0], 0)\n-        self._moving_image = index_img(self.aggregate_outputs().out_corrected, 0)\n-        NIWORKFLOWS_LOG.info('Report - setting before (%s) and after (%s) images',\n+        self._fixed_image_label = \"corrected\"\n+        self._moving_image_label = \"warped\"\n+        self._fixed_image = index_img(self.aggregate_outputs().out_corrected, 0)\n+        self._moving_image = index_img(self.inputs.in_files[0], 0)\n+        self._contour = self.inputs.wm_seg if isdefined(self.inputs.wm_seg) else None","path":"niworkflows/interfaces/registration.py","position":32,"original_position":32,"commit_id":"fec75687c0f54af14f02b237c3ce39605f0fcae3","original_commit_id":"fec75687c0f54af14f02b237c3ce39605f0fcae3","user":{"login":"rwblair","id":14927911,"avatar_url":"https://avatars.githubusercontent.com/u/14927911?v=3","gravatar_id":"","url":"https://api.github.com/users/rwblair","html_url":"https://github.com/rwblair","followers_url":"https://api.github.com/users/rwblair/followers","following_url":"https://api.github.com/users/rwblair/following{/other_user}","gists_url":"https://api.github.com/users/rwblair/gists{/gist_id}","starred_url":"https://api.github.com/users/rwblair/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rwblair/subscriptions","organizations_url":"https://api.github.com/users/rwblair/orgs","repos_url":"https://api.github.com/users/rwblair/repos","events_url":"https://api.github.com/users/rwblair/events{/privacy}","received_events_url":"https://api.github.com/users/rwblair/received_events","type":"User","site_admin":false},"body":"http://nipype.readthedocs.io/en/latest/interfaces/generated/nipype.interfaces.fsl.epi.html#applytopup\r\n\r\nDoes not look like it from the docs.","created_at":"2016-12-14T23:17:01Z","updated_at":"2016-12-14T23:17:01Z","html_url":"https://github.com/poldracklab/niworkflows/pull/96#discussion_r92512763","pull_request_url":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96","_links":{"self":{"href":"https://api.github.com/repos/poldracklab/niworkflows/pulls/comments/92512763"},"html":{"href":"https://github.com/poldracklab/niworkflows/pull/96#discussion_r92512763"},"pull_request":{"href":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96"}}},"pull_request":{"url":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96","id":98029389,"html_url":"https://github.com/poldracklab/niworkflows/pull/96","diff_url":"https://github.com/poldracklab/niworkflows/pull/96.diff","patch_url":"https://github.com/poldracklab/niworkflows/pull/96.patch","issue_url":"https://api.github.com/repos/poldracklab/niworkflows/issues/96","number":96,"state":"open","locked":false,"title":"[ENH,RTM] Fieldmap-correction RC interfaces","user":{"login":"oesteban","id":598470,"avatar_url":"https://avatars.githubusercontent.com/u/598470?v=3","gravatar_id":"","url":"https://api.github.com/users/oesteban","html_url":"https://github.com/oesteban","followers_url":"https://api.github.com/users/oesteban/followers","following_url":"https://api.github.com/users/oesteban/following{/other_user}","gists_url":"https://api.github.com/users/oesteban/gists{/gist_id}","starred_url":"https://api.github.com/users/oesteban/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/oesteban/subscriptions","organizations_url":"https://api.github.com/users/oesteban/orgs","repos_url":"https://api.github.com/users/oesteban/repos","events_url":"https://api.github.com/users/oesteban/events{/privacy}","received_events_url":"https://api.github.com/users/oesteban/received_events","type":"User","site_admin":false},"body":"- Adds the FUGUE interface\r\n- Rename labels in output reportlet\r\n- Add option to set a reference WM contour","created_at":"2016-12-14T20:28:22Z","updated_at":"2016-12-14T23:17:01Z","closed_at":null,"merged_at":null,"merge_commit_sha":"725e77b159e76c39daac43fb253feca64588f301","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96/commits","review_comments_url":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96/comments","review_comment_url":"https://api.github.com/repos/poldracklab/niworkflows/pulls/comments{/number}","comments_url":"https://api.github.com/repos/poldracklab/niworkflows/issues/96/comments","statuses_url":"https://api.github.com/repos/poldracklab/niworkflows/statuses/fec75687c0f54af14f02b237c3ce39605f0fcae3","head":{"label":"oesteban:enh/WrappingFUGUE","ref":"enh/WrappingFUGUE","sha":"fec75687c0f54af14f02b237c3ce39605f0fcae3","user":{"login":"oesteban","id":598470,"avatar_url":"https://avatars.githubusercontent.com/u/598470?v=3","gravatar_id":"","url":"https://api.github.com/users/oesteban","html_url":"https://github.com/oesteban","followers_url":"https://api.github.com/users/oesteban/followers","following_url":"https://api.github.com/users/oesteban/following{/other_user}","gists_url":"https://api.github.com/users/oesteban/gists{/gist_id}","starred_url":"https://api.github.com/users/oesteban/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/oesteban/subscriptions","organizations_url":"https://api.github.com/users/oesteban/orgs","repos_url":"https://api.github.com/users/oesteban/repos","events_url":"https://api.github.com/users/oesteban/events{/privacy}","received_events_url":"https://api.github.com/users/oesteban/received_events","type":"User","site_admin":false},"repo":{"id":74174878,"name":"niworkflows","full_name":"oesteban/niworkflows","owner":{"login":"oesteban","id":598470,"avatar_url":"https://avatars.githubusercontent.com/u/598470?v=3","gravatar_id":"","url":"https://api.github.com/users/oesteban","html_url":"https://github.com/oesteban","followers_url":"https://api.github.com/users/oesteban/followers","following_url":"https://api.github.com/users/oesteban/following{/other_user}","gists_url":"https://api.github.com/users/oesteban/gists{/gist_id}","starred_url":"https://api.github.com/users/oesteban/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/oesteban/subscriptions","organizations_url":"https://api.github.com/users/oesteban/orgs","repos_url":"https://api.github.com/users/oesteban/repos","events_url":"https://api.github.com/users/oesteban/events{/privacy}","received_events_url":"https://api.github.com/users/oesteban/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/oesteban/niworkflows","description":"Common workflows for MRI (anatomical, functional, diffusion, etc)","fork":true,"url":"https://api.github.com/repos/oesteban/niworkflows","forks_url":"https://api.github.com/repos/oesteban/niworkflows/forks","keys_url":"https://api.github.com/repos/oesteban/niworkflows/keys{/key_id}","collaborators_url":"https://api.github.com/repos/oesteban/niworkflows/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/oesteban/niworkflows/teams","hooks_url":"https://api.github.com/repos/oesteban/niworkflows/hooks","issue_events_url":"https://api.github.com/repos/oesteban/niworkflows/issues/events{/number}","events_url":"https://api.github.com/repos/oesteban/niworkflows/events","assignees_url":"https://api.github.com/repos/oesteban/niworkflows/assignees{/user}","branches_url":"https://api.github.com/repos/oesteban/niworkflows/branches{/branch}","tags_url":"https://api.github.com/repos/oesteban/niworkflows/tags","blobs_url":"https://api.github.com/repos/oesteban/niworkflows/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/oesteban/niworkflows/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/oesteban/niworkflows/git/refs{/sha}","trees_url":"https://api.github.com/repos/oesteban/niworkflows/git/trees{/sha}","statuses_url":"https://api.github.com/repos/oesteban/niworkflows/statuses/{sha}","languages_url":"https://api.github.com/repos/oesteban/niworkflows/languages","stargazers_url":"https://api.github.com/repos/oesteban/niworkflows/stargazers","contributors_url":"https://api.github.com/repos/oesteban/niworkflows/contributors","subscribers_url":"https://api.github.com/repos/oesteban/niworkflows/subscribers","subscription_url":"https://api.github.com/repos/oesteban/niworkflows/subscription","commits_url":"https://api.github.com/repos/oesteban/niworkflows/commits{/sha}","git_commits_url":"https://api.github.com/repos/oesteban/niworkflows/git/commits{/sha}","comments_url":"https://api.github.com/repos/oesteban/niworkflows/comments{/number}","issue_comment_url":"https://api.github.com/repos/oesteban/niworkflows/issues/comments{/number}","contents_url":"https://api.github.com/repos/oesteban/niworkflows/contents/{+path}","compare_url":"https://api.github.com/repos/oesteban/niworkflows/compare/{base}...{head}","merges_url":"https://api.github.com/repos/oesteban/niworkflows/merges","archive_url":"https://api.github.com/repos/oesteban/niworkflows/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/oesteban/niworkflows/downloads","issues_url":"https://api.github.com/repos/oesteban/niworkflows/issues{/number}","pulls_url":"https://api.github.com/repos/oesteban/niworkflows/pulls{/number}","milestones_url":"https://api.github.com/repos/oesteban/niworkflows/milestones{/number}","notifications_url":"https://api.github.com/repos/oesteban/niworkflows/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/oesteban/niworkflows/labels{/name}","releases_url":"https://api.github.com/repos/oesteban/niworkflows/releases{/id}","deployments_url":"https://api.github.com/repos/oesteban/niworkflows/deployments","created_at":"2016-11-18T23:35:34Z","updated_at":"2016-11-18T23:35:35Z","pushed_at":"2016-12-14T20:27:52Z","git_url":"git://github.com/oesteban/niworkflows.git","ssh_url":"git@github.com:oesteban/niworkflows.git","clone_url":"https://github.com/oesteban/niworkflows.git","svn_url":"https://github.com/oesteban/niworkflows","homepage":"","size":224606,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"poldracklab:master","ref":"master","sha":"24300b21fd7a51bcd252f8fd5fc3dfb4c4fa5a09","user":{"login":"poldracklab","id":9287954,"avatar_url":"https://avatars.githubusercontent.com/u/9287954?v=3","gravatar_id":"","url":"https://api.github.com/users/poldracklab","html_url":"https://github.com/poldracklab","followers_url":"https://api.github.com/users/poldracklab/followers","following_url":"https://api.github.com/users/poldracklab/following{/other_user}","gists_url":"https://api.github.com/users/poldracklab/gists{/gist_id}","starred_url":"https://api.github.com/users/poldracklab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/poldracklab/subscriptions","organizations_url":"https://api.github.com/users/poldracklab/orgs","repos_url":"https://api.github.com/users/poldracklab/repos","events_url":"https://api.github.com/users/poldracklab/events{/privacy}","received_events_url":"https://api.github.com/users/poldracklab/received_events","type":"Organization","site_admin":false},"repo":{"id":63891310,"name":"niworkflows","full_name":"poldracklab/niworkflows","owner":{"login":"poldracklab","id":9287954,"avatar_url":"https://avatars.githubusercontent.com/u/9287954?v=3","gravatar_id":"","url":"https://api.github.com/users/poldracklab","html_url":"https://github.com/poldracklab","followers_url":"https://api.github.com/users/poldracklab/followers","following_url":"https://api.github.com/users/poldracklab/following{/other_user}","gists_url":"https://api.github.com/users/poldracklab/gists{/gist_id}","starred_url":"https://api.github.com/users/poldracklab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/poldracklab/subscriptions","organizations_url":"https://api.github.com/users/poldracklab/orgs","repos_url":"https://api.github.com/users/poldracklab/repos","events_url":"https://api.github.com/users/poldracklab/events{/privacy}","received_events_url":"https://api.github.com/users/poldracklab/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/poldracklab/niworkflows","description":"Common workflows for MRI (anatomical, functional, diffusion, etc)","fork":false,"url":"https://api.github.com/repos/poldracklab/niworkflows","forks_url":"https://api.github.com/repos/poldracklab/niworkflows/forks","keys_url":"https://api.github.com/repos/poldracklab/niworkflows/keys{/key_id}","collaborators_url":"https://api.github.com/repos/poldracklab/niworkflows/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/poldracklab/niworkflows/teams","hooks_url":"https://api.github.com/repos/poldracklab/niworkflows/hooks","issue_events_url":"https://api.github.com/repos/poldracklab/niworkflows/issues/events{/number}","events_url":"https://api.github.com/repos/poldracklab/niworkflows/events","assignees_url":"https://api.github.com/repos/poldracklab/niworkflows/assignees{/user}","branches_url":"https://api.github.com/repos/poldracklab/niworkflows/branches{/branch}","tags_url":"https://api.github.com/repos/poldracklab/niworkflows/tags","blobs_url":"https://api.github.com/repos/poldracklab/niworkflows/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/poldracklab/niworkflows/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/poldracklab/niworkflows/git/refs{/sha}","trees_url":"https://api.github.com/repos/poldracklab/niworkflows/git/trees{/sha}","statuses_url":"https://api.github.com/repos/poldracklab/niworkflows/statuses/{sha}","languages_url":"https://api.github.com/repos/poldracklab/niworkflows/languages","stargazers_url":"https://api.github.com/repos/poldracklab/niworkflows/stargazers","contributors_url":"https://api.github.com/repos/poldracklab/niworkflows/contributors","subscribers_url":"https://api.github.com/repos/poldracklab/niworkflows/subscribers","subscription_url":"https://api.github.com/repos/poldracklab/niworkflows/subscription","commits_url":"https://api.github.com/repos/poldracklab/niworkflows/commits{/sha}","git_commits_url":"https://api.github.com/repos/poldracklab/niworkflows/git/commits{/sha}","comments_url":"https://api.github.com/repos/poldracklab/niworkflows/comments{/number}","issue_comment_url":"https://api.github.com/repos/poldracklab/niworkflows/issues/comments{/number}","contents_url":"https://api.github.com/repos/poldracklab/niworkflows/contents/{+path}","compare_url":"https://api.github.com/repos/poldracklab/niworkflows/compare/{base}...{head}","merges_url":"https://api.github.com/repos/poldracklab/niworkflows/merges","archive_url":"https://api.github.com/repos/poldracklab/niworkflows/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/poldracklab/niworkflows/downloads","issues_url":"https://api.github.com/repos/poldracklab/niworkflows/issues{/number}","pulls_url":"https://api.github.com/repos/poldracklab/niworkflows/pulls{/number}","milestones_url":"https://api.github.com/repos/poldracklab/niworkflows/milestones{/number}","notifications_url":"https://api.github.com/repos/poldracklab/niworkflows/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/poldracklab/niworkflows/labels{/name}","releases_url":"https://api.github.com/repos/poldracklab/niworkflows/releases{/id}","deployments_url":"https://api.github.com/repos/poldracklab/niworkflows/deployments","created_at":"2016-07-21T18:00:32Z","updated_at":"2016-10-26T23:18:34Z","pushed_at":"2016-12-14T22:19:25Z","git_url":"git://github.com/poldracklab/niworkflows.git","ssh_url":"git@github.com:poldracklab/niworkflows.git","clone_url":"https://github.com/poldracklab/niworkflows.git","svn_url":"https://github.com/poldracklab/niworkflows","homepage":"","size":224618,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":4,"mirror_url":null,"open_issues_count":20,"forks":4,"open_issues":20,"watchers":0,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96"},"html":{"href":"https://github.com/poldracklab/niworkflows/pull/96"},"issue":{"href":"https://api.github.com/repos/poldracklab/niworkflows/issues/96"},"comments":{"href":"https://api.github.com/repos/poldracklab/niworkflows/issues/96/comments"},"review_comments":{"href":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96/comments"},"review_comment":{"href":"https://api.github.com/repos/poldracklab/niworkflows/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/poldracklab/niworkflows/pulls/96/commits"},"statuses":{"href":"https://api.github.com/repos/poldracklab/niworkflows/statuses/fec75687c0f54af14f02b237c3ce39605f0fcae3"}}}}
{"actor":{"display_login":"rwblair"}}