{"action":"closed","issue":{"url":"https://api.github.com/repos/hall-lab/speedseq/issues/79","repository_url":"https://api.github.com/repos/hall-lab/speedseq","labels_url":"https://api.github.com/repos/hall-lab/speedseq/issues/79/labels{/name}","comments_url":"https://api.github.com/repos/hall-lab/speedseq/issues/79/comments","events_url":"https://api.github.com/repos/hall-lab/speedseq/issues/79/events","html_url":"https://github.com/hall-lab/speedseq/issues/79","id":158492798,"number":79,"title":"cnvnator-multi error","user":{"login":"mswierniak","id":19743987,"avatar_url":"https://avatars.githubusercontent.com/u/19743987?v=3","gravatar_id":"","url":"https://api.github.com/users/mswierniak","html_url":"https://github.com/mswierniak","followers_url":"https://api.github.com/users/mswierniak/followers","following_url":"https://api.github.com/users/mswierniak/following{/other_user}","gists_url":"https://api.github.com/users/mswierniak/gists{/gist_id}","starred_url":"https://api.github.com/users/mswierniak/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mswierniak/subscriptions","organizations_url":"https://api.github.com/users/mswierniak/orgs","repos_url":"https://api.github.com/users/mswierniak/repos","events_url":"https://api.github.com/users/mswierniak/events{/privacy}","received_events_url":"https://api.github.com/users/mswierniak/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-06-04T07:35:55Z","updated_at":"2016-06-05T12:13:48Z","closed_at":"2016-06-05T12:13:48Z","body":"Hi,\r\nI have a problem with CNVnator compilation. Root (v.5.34.36) is installed and sourced (also added to the speedseq.cinfig). I'm using Ubuntu 14.04.4 LTS. When I've tried to 'make cnvnator-multi' I've got:\r\n:~/speedseq$ make cnvnator-multi\r\nmake -C src/cnvnator\r\n...\r\n\r\ng++ -m64 -O3 -DCNVNATOR_VERSION=\\\"v0.3\\\" -o bin/cnvnator-multi src/obj/cnvnator.o src/obj/HisMaker.o src/obj/AliParser.o src/obj/Genotyper.o src/obj/Interval.o src/obj/Genome.o src/obj/TreeBuilder.o src/samtools/libbam.a -lz -L/home/mswierniak/root/lib -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lMatrix -lPhysics -lMathCore -lThread -lGui\r\n/usr/bin/ld: src/obj/TreeBuilder.o: undefined reference to symbol 'pthread_create@@GLIBC_2.2.5'\r\n//lib/x86_64-linux-gnu/libpthread.so.0: error adding symbols: DSO missing from command line\r\ncollect2: error: ld returned 1 exit status\r\nmake[1]: *** [cnvnator-multi] Error 1\r\nmake[1]: Leaving directory `/home/mswierniak/speedseq/src/cnvnator'\r\nmake: *** [cnvnator-multi] Error 2\r\n\r\n "}}
{"actor":{"display_login":"mswierniak"}}