{"action":"closed","issue":{"url":"https://api.github.com/repos/CSB5/INC-Seq/issues/3","repository_url":"https://api.github.com/repos/CSB5/INC-Seq","labels_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/3/comments","events_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/3/events","html_url":"https://github.com/CSB5/INC-Seq/issues/3","id":158553367,"number":3,"title":"Error","user":{"login":"Szymonome","id":7849475,"avatar_url":"https://avatars.githubusercontent.com/u/7849475?v=3","gravatar_id":"","url":"https://api.github.com/users/Szymonome","html_url":"https://github.com/Szymonome","followers_url":"https://api.github.com/users/Szymonome/followers","following_url":"https://api.github.com/users/Szymonome/following{/other_user}","gists_url":"https://api.github.com/users/Szymonome/gists{/gist_id}","starred_url":"https://api.github.com/users/Szymonome/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Szymonome/subscriptions","organizations_url":"https://api.github.com/users/Szymonome/orgs","repos_url":"https://api.github.com/users/Szymonome/repos","events_url":"https://api.github.com/users/Szymonome/events{/privacy}","received_events_url":"https://api.github.com/users/Szymonome/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":14,"created_at":"2016-06-05T13:02:07Z","updated_at":"2016-06-07T01:33:10Z","closed_at":"2016-06-07T01:33:10Z","body":"Hello,\r\n\r\nLast week I was testing INC-Seq software with your data \"ladder_rep_1\" and after processing read 73 I got an error - please see below. It looks like software worked fine for the first 72 reads. Do you know why is it like that?\r\n\r\nRegards\r\nSzymon\r\n\r\n---------- Processing read 72 ----------\r\nMax number of segments found: 0 \r\nConsensus construction failed!\r\n---------- Processing read 73 ----------\r\nMax number of segments found: 7 \r\nNumber of segments of the candidate strech: 7\r\nCandidate read found!\r\nTraceback (most recent call last):\r\n  File \"/home/opt/INC-Seq/inc-seq.py\", line 160, in <module>\r\n    sys.exit(main(sys.argv[1:]))\r\n  File \"/home/opt/INC-Seq/inc-seq.py\", line 147, in main\r\n    args.seg_cov, args.iterative)\r\n  File \"/home/opt/INC-Seq/inc-seq.py\", line 24, in callBuildConsensus\r\n    seg_cov, iterative)\r\n  File \"/software/INC-Seq/utils/buildConsensus.py\", line 288, in consensus_blastn\r\n    consensus = pbdagcon(tmpname+'.m5', 0)\r\n  File \"/software/INC-Seq/utils/buildConsensus.py\", line 206, in pbdagcon\r\n    proc = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)\r\n  File \"/home/opt/.pyenv/versions/2.7.8/lib/python2.7/subprocess.py\", line 710, in __init__\r\n    errread, errwrite)\r\n  File \"/home/opt/.pyenv/versions/2.7.8/lib/python2.7/subprocess.py\", line 1327, in _execute_child\r\n    raise child_exception\r\nOSError: [Errno 2] No such file or directory"}}
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