{"action":"created","issue":{"url":"https://api.github.com/repos/tanghaibao/jcvi/issues/37","repository_url":"https://api.github.com/repos/tanghaibao/jcvi","labels_url":"https://api.github.com/repos/tanghaibao/jcvi/issues/37/labels{/name}","comments_url":"https://api.github.com/repos/tanghaibao/jcvi/issues/37/comments","events_url":"https://api.github.com/repos/tanghaibao/jcvi/issues/37/events","html_url":"https://github.com/tanghaibao/jcvi/issues/37","id":187311165,"number":37,"title":"BioNano data revisited.","user":{"login":"JohnUrban","id":7783314,"avatar_url":"https://avatars.githubusercontent.com/u/7783314?v=3","gravatar_id":"","url":"https://api.github.com/users/JohnUrban","html_url":"https://github.com/JohnUrban","followers_url":"https://api.github.com/users/JohnUrban/followers","following_url":"https://api.github.com/users/JohnUrban/following{/other_user}","gists_url":"https://api.github.com/users/JohnUrban/gists{/gist_id}","starred_url":"https://api.github.com/users/JohnUrban/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JohnUrban/subscriptions","organizations_url":"https://api.github.com/users/JohnUrban/orgs","repos_url":"https://api.github.com/users/JohnUrban/repos","events_url":"https://api.github.com/users/JohnUrban/events{/privacy}","received_events_url":"https://api.github.com/users/JohnUrban/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-11-04T11:31:13Z","updated_at":"2016-11-06T03:37:24Z","closed_at":null,"body":"Hi,\r\n\r\nThis tool seems to be capable of great feats if one has the right data (someone recently showed me some numbers). I do not have genetic map information, but I do have optical map information from BioNano. I might soon have more than one type of optical map (e.g. from different enzymes). I saw in #8, which was open and closed in March, someone already asked about bionano data and the response was that it could be possible to use with AllMaps, but was not officially supported. I was wondering if there has been any more exploration of using BioNano data with AllMaps by the developers or any users who might be reading this, and if so, how did it go? \r\n\r\nbest,\r\n\r\n  John"},"comment":{"url":"https://api.github.com/repos/tanghaibao/jcvi/issues/comments/258658361","html_url":"https://github.com/tanghaibao/jcvi/issues/37#issuecomment-258658361","issue_url":"https://api.github.com/repos/tanghaibao/jcvi/issues/37","id":258658361,"user":{"login":"tanghaibao","id":106987,"avatar_url":"https://avatars.githubusercontent.com/u/106987?v=3","gravatar_id":"","url":"https://api.github.com/users/tanghaibao","html_url":"https://github.com/tanghaibao","followers_url":"https://api.github.com/users/tanghaibao/followers","following_url":"https://api.github.com/users/tanghaibao/following{/other_user}","gists_url":"https://api.github.com/users/tanghaibao/gists{/gist_id}","starred_url":"https://api.github.com/users/tanghaibao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tanghaibao/subscriptions","organizations_url":"https://api.github.com/users/tanghaibao/orgs","repos_url":"https://api.github.com/users/tanghaibao/repos","events_url":"https://api.github.com/users/tanghaibao/events{/privacy}","received_events_url":"https://api.github.com/users/tanghaibao/received_events","type":"User","site_admin":false},"created_at":"2016-11-06T03:37:24Z","updated_at":"2016-11-06T03:37:24Z","body":"@JohnUrban you are not alone in that regard - I was asked a few times. The most important step is to convert the maps (``.cmap`` and ``.xmap``) to the ``.bed`` format which translate coordinates on the scaffolds to the coordinates on the map. I don't have an assembly project that has corresponding BioNano data yet but would like to guide any one who wishes to work on this."}}
{"actor":{"display_login":"tanghaibao"}}