{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/360","repository_url":"https://api.github.com/repos/PacificBiosciences/FALCON","labels_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/360/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/360/comments","events_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/360/events","html_url":"https://github.com/PacificBiosciences/FALCON/issues/360","id":154088592,"number":360,"title":"what causes preads shorter than the length_cutoff?","user":{"login":"dgordon562","id":11529099,"avatar_url":"https://avatars.githubusercontent.com/u/11529099?v=3","gravatar_id":"","url":"https://api.github.com/users/dgordon562","html_url":"https://github.com/dgordon562","followers_url":"https://api.github.com/users/dgordon562/followers","following_url":"https://api.github.com/users/dgordon562/following{/other_user}","gists_url":"https://api.github.com/users/dgordon562/gists{/gist_id}","starred_url":"https://api.github.com/users/dgordon562/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dgordon562/subscriptions","organizations_url":"https://api.github.com/users/dgordon562/orgs","repos_url":"https://api.github.com/users/dgordon562/repos","events_url":"https://api.github.com/users/dgordon562/events{/privacy}","received_events_url":"https://api.github.com/users/dgordon562/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/labels/question","name":"question","color":"cc317c"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-05-10T19:36:03Z","updated_at":"2016-05-11T00:38:40Z","closed_at":"2016-05-10T21:27:05Z","body":"Hi, Chris and Jason,\r\n\r\nFor example, with a length_cutoff of 10kb, I'm seeing a pread of 500bp.  Isn't the length_cutoff the minimum length of a seed read?  And won't the pread derived from that seed read be at least as long as the seed read?   (Feel free to draw little picture...)\r\n\r\nThanks!\r\nDavid"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/comments/218332209","html_url":"https://github.com/PacificBiosciences/FALCON/issues/360#issuecomment-218332209","issue_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/360","id":218332209,"user":{"login":"pb-jchin","id":1071734,"avatar_url":"https://avatars.githubusercontent.com/u/1071734?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-jchin","html_url":"https://github.com/pb-jchin","followers_url":"https://api.github.com/users/pb-jchin/followers","following_url":"https://api.github.com/users/pb-jchin/following{/other_user}","gists_url":"https://api.github.com/users/pb-jchin/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-jchin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-jchin/subscriptions","organizations_url":"https://api.github.com/users/pb-jchin/orgs","repos_url":"https://api.github.com/users/pb-jchin/repos","events_url":"https://api.github.com/users/pb-jchin/events{/privacy}","received_events_url":"https://api.github.com/users/pb-jchin/received_events","type":"User","site_admin":false},"created_at":"2016-05-11T00:38:40Z","updated_at":"2016-05-11T00:38:40Z","body":"the pread can be shorter the length cutoff. (trimming, chimers getting broken, etc.) see suppl. figure 1 from http://www.nature.com/nmeth/journal/v10/n6/extref/nmeth.2474-S1.pdf"}}