{"action":"created","issue":{"url":"https://api.github.com/repos/mothur/mothur/issues/230","repository_url":"https://api.github.com/repos/mothur/mothur","labels_url":"https://api.github.com/repos/mothur/mothur/issues/230/labels{/name}","comments_url":"https://api.github.com/repos/mothur/mothur/issues/230/comments","events_url":"https://api.github.com/repos/mothur/mothur/issues/230/events","html_url":"https://github.com/mothur/mothur/issues/230","id":149169370,"number":230,"title":"make.contigs bug in 1.37?","user":{"login":"Shellfishgene","id":1769465,"avatar_url":"https://avatars.githubusercontent.com/u/1769465?v=3","gravatar_id":"","url":"https://api.github.com/users/Shellfishgene","html_url":"https://github.com/Shellfishgene","followers_url":"https://api.github.com/users/Shellfishgene/followers","following_url":"https://api.github.com/users/Shellfishgene/following{/other_user}","gists_url":"https://api.github.com/users/Shellfishgene/gists{/gist_id}","starred_url":"https://api.github.com/users/Shellfishgene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Shellfishgene/subscriptions","organizations_url":"https://api.github.com/users/Shellfishgene/orgs","repos_url":"https://api.github.com/users/Shellfishgene/repos","events_url":"https://api.github.com/users/Shellfishgene/events{/privacy}","received_events_url":"https://api.github.com/users/Shellfishgene/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-04-18T14:36:42Z","updated_at":"2016-04-18T19:33:30Z","closed_at":null,"body":"Hi,\r\n\r\nI just downloaded 1.37 and tried to run make.contigs, as the previous version had the bug with the missing groups file. However with this version I get a different error:\r\n\r\n```\r\nmothur > make.contigs(file=foo.txt)\r\n\r\nUsing 1 processors.\r\n\r\n>>>>>\tProcessing file pair 192_R1.fastq.gz - 192_R2.fastq.gz (files 1 of 1)\t<<<<<\r\n[ERROR]: Could not open 192_R2.fastq.gz\r\n[WARNING]: Blank fasta name, ignoring read.\r\n[WARNING]: missing sequence for , ignoring.[WARNING]: expected a name with + as a leading character, ignoring.[WARNING]: missing quality for , ignoring.Making contigs...\r\n[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, HWI-M01755_238__1_1101_7958_7964.\r\n[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, HWI-M01755_238__1_1101_23768_26221.\r\n[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, HWI-M01755_238__1_1102_5344_7070.\r\n[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, HWI-M01755_238__1_1102_25178_16973.\r\n[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, HWI-M01755_238__1_1102_24636_23919.\r\n(many more of the same warning)\r\n```\r\nThe files are both there, and running the exact same command in the same directory does not result in an error using mothur 1.36.1.\r\nThis is with a bunch of different files, gzipped or not gzipped. The names in my files match, at least the part before the space and the 1:N: / 2:N: stuff (MiSeq data).\r\n\r\nCheers"},"comment":{"url":"https://api.github.com/repos/mothur/mothur/issues/comments/211542761","html_url":"https://github.com/mothur/mothur/issues/230#issuecomment-211542761","issue_url":"https://api.github.com/repos/mothur/mothur/issues/230","id":211542761,"user":{"login":"mothur-westcott","id":1379958,"avatar_url":"https://avatars.githubusercontent.com/u/1379958?v=3","gravatar_id":"","url":"https://api.github.com/users/mothur-westcott","html_url":"https://github.com/mothur-westcott","followers_url":"https://api.github.com/users/mothur-westcott/followers","following_url":"https://api.github.com/users/mothur-westcott/following{/other_user}","gists_url":"https://api.github.com/users/mothur-westcott/gists{/gist_id}","starred_url":"https://api.github.com/users/mothur-westcott/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mothur-westcott/subscriptions","organizations_url":"https://api.github.com/users/mothur-westcott/orgs","repos_url":"https://api.github.com/users/mothur-westcott/repos","events_url":"https://api.github.com/users/mothur-westcott/events{/privacy}","received_events_url":"https://api.github.com/users/mothur-westcott/received_events","type":"User","site_admin":false},"created_at":"2016-04-18T19:33:30Z","updated_at":"2016-04-18T19:33:30Z","body":"https://github.com/mothur/mothur/releases/tag/v1.37.2"}}