{"action":"created","issue":{"url":"https://api.github.com/repos/AllenInstitute/AllenSDK/issues/14","repository_url":"https://api.github.com/repos/AllenInstitute/AllenSDK","labels_url":"https://api.github.com/repos/AllenInstitute/AllenSDK/issues/14/labels{/name}","comments_url":"https://api.github.com/repos/AllenInstitute/AllenSDK/issues/14/comments","events_url":"https://api.github.com/repos/AllenInstitute/AllenSDK/issues/14/events","html_url":"https://github.com/AllenInstitute/AllenSDK/issues/14","id":118573400,"number":14,"title":"Reproducing published injection site set","user":{"login":"maedoc","id":5189886,"avatar_url":"https://avatars.githubusercontent.com/u/5189886?v=3","gravatar_id":"","url":"https://api.github.com/users/maedoc","html_url":"https://github.com/maedoc","followers_url":"https://api.github.com/users/maedoc/followers","following_url":"https://api.github.com/users/maedoc/following{/other_user}","gists_url":"https://api.github.com/users/maedoc/gists{/gist_id}","starred_url":"https://api.github.com/users/maedoc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maedoc/subscriptions","organizations_url":"https://api.github.com/users/maedoc/orgs","repos_url":"https://api.github.com/users/maedoc/repos","events_url":"https://api.github.com/users/maedoc/events{/privacy}","received_events_url":"https://api.github.com/users/maedoc/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2015-11-24T10:12:38Z","updated_at":"2016-08-17T21:20:38Z","closed_at":"2016-08-17T21:20:38Z","body":"Using only the AllenSDK, we are trying to reproduce the set of injection/target sites used in Oh et al 2014 (and Calabrese et al 2015). It is stated that the selection is made such that site sizes roughly match infection size, but it appears that the only way to reproduce this selection in the ontology is to analyze all the images ourselves. \r\n\r\nHave we missed something? Are the nodes in the ontology annotated as to whether they are in the 295 regions used in the Oh et al paper? If not, could this be added to the SDK?"},"comment":{"url":"https://api.github.com/repos/AllenInstitute/AllenSDK/issues/comments/240552400","html_url":"https://github.com/AllenInstitute/AllenSDK/issues/14#issuecomment-240552400","issue_url":"https://api.github.com/repos/AllenInstitute/AllenSDK/issues/14","id":240552400,"user":{"login":"dyf","id":1854389,"avatar_url":"https://avatars.githubusercontent.com/u/1854389?v=3","gravatar_id":"","url":"https://api.github.com/users/dyf","html_url":"https://github.com/dyf","followers_url":"https://api.github.com/users/dyf/followers","following_url":"https://api.github.com/users/dyf/following{/other_user}","gists_url":"https://api.github.com/users/dyf/gists{/gist_id}","starred_url":"https://api.github.com/users/dyf/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dyf/subscriptions","organizations_url":"https://api.github.com/users/dyf/orgs","repos_url":"https://api.github.com/users/dyf/repos","events_url":"https://api.github.com/users/dyf/events{/privacy}","received_events_url":"https://api.github.com/users/dyf/received_events","type":"User","site_admin":false},"created_at":"2016-08-17T21:20:38Z","updated_at":"2016-08-17T21:20:38Z","body":"Closing this -- I think the question is answered."}}
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