{"action":"created","issue":{"url":"https://api.github.com/repos/Intel-HLS/GenomicsDB/issues/34","repository_url":"https://api.github.com/repos/Intel-HLS/GenomicsDB","labels_url":"https://api.github.com/repos/Intel-HLS/GenomicsDB/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/Intel-HLS/GenomicsDB/issues/34/comments","events_url":"https://api.github.com/repos/Intel-HLS/GenomicsDB/issues/34/events","html_url":"https://github.com/Intel-HLS/GenomicsDB/issues/34","id":164105879,"number":34,"title":"jar from maven fails to load library on Travis-CI","user":{"login":"lbergelson","id":4700332,"avatar_url":"https://avatars.githubusercontent.com/u/4700332?v=3","gravatar_id":"","url":"https://api.github.com/users/lbergelson","html_url":"https://github.com/lbergelson","followers_url":"https://api.github.com/users/lbergelson/followers","following_url":"https://api.github.com/users/lbergelson/following{/other_user}","gists_url":"https://api.github.com/users/lbergelson/gists{/gist_id}","starred_url":"https://api.github.com/users/lbergelson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbergelson/subscriptions","organizations_url":"https://api.github.com/users/lbergelson/orgs","repos_url":"https://api.github.com/users/lbergelson/repos","events_url":"https://api.github.com/users/lbergelson/events{/privacy}","received_events_url":"https://api.github.com/users/lbergelson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":17,"created_at":"2016-07-06T15:35:48Z","updated_at":"2016-07-07T23:01:59Z","closed_at":null,"body":"We're unable to load the native library from the genomicsDB jar when running gatk on travis-ci.  It's using ubuntu 14.04.  We're able to run the same tests on our local macs and redhat machines, so I suspect it's some library incompatibility. \r\n\r\nError logs [here](https://storage.googleapis.com/hellbender/test/build_reports/6580.2/tests/index.html) and the relevant pull request enabling genomics db support in gatk is https://github.com/broadinstitute/gatk/pull/1975.\r\n\r\nIs it possible to provide a jar that will run on ubuntu 14.04?  I'm not sure what library is incompatible because the error messages are not very descriptive.\r\n"},"comment":{"url":"https://api.github.com/repos/Intel-HLS/GenomicsDB/issues/comments/231232800","html_url":"https://github.com/Intel-HLS/GenomicsDB/issues/34#issuecomment-231232800","issue_url":"https://api.github.com/repos/Intel-HLS/GenomicsDB/issues/34","id":231232800,"user":{"login":"kgururaj","id":5776852,"avatar_url":"https://avatars.githubusercontent.com/u/5776852?v=3","gravatar_id":"","url":"https://api.github.com/users/kgururaj","html_url":"https://github.com/kgururaj","followers_url":"https://api.github.com/users/kgururaj/followers","following_url":"https://api.github.com/users/kgururaj/following{/other_user}","gists_url":"https://api.github.com/users/kgururaj/gists{/gist_id}","starred_url":"https://api.github.com/users/kgururaj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kgururaj/subscriptions","organizations_url":"https://api.github.com/users/kgururaj/orgs","repos_url":"https://api.github.com/users/kgururaj/repos","events_url":"https://api.github.com/users/kgururaj/events{/privacy}","received_events_url":"https://api.github.com/users/kgururaj/received_events","type":"User","site_admin":false},"created_at":"2016-07-07T23:01:59Z","updated_at":"2016-07-07T23:01:59Z","body":"@lbergelson A clarification - the fix I referred to in the second option will not be available quickly. For your current testing, I would suggest using option 1."}}
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