{"action":"created","issue":{"url":"https://api.github.com/repos/neurospin/pypreprocess/issues/254","repository_url":"https://api.github.com/repos/neurospin/pypreprocess","labels_url":"https://api.github.com/repos/neurospin/pypreprocess/issues/254/labels{/name}","comments_url":"https://api.github.com/repos/neurospin/pypreprocess/issues/254/comments","events_url":"https://api.github.com/repos/neurospin/pypreprocess/issues/254/events","html_url":"https://github.com/neurospin/pypreprocess/issues/254","id":178833111,"number":254,"title":"Update the probabilistic maps for the Segmentation?","user":{"login":"estheryclin","id":4628224,"avatar_url":"https://avatars.githubusercontent.com/u/4628224?v=3","gravatar_id":"","url":"https://api.github.com/users/estheryclin","html_url":"https://github.com/estheryclin","followers_url":"https://api.github.com/users/estheryclin/followers","following_url":"https://api.github.com/users/estheryclin/following{/other_user}","gists_url":"https://api.github.com/users/estheryclin/gists{/gist_id}","starred_url":"https://api.github.com/users/estheryclin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/estheryclin/subscriptions","organizations_url":"https://api.github.com/users/estheryclin/orgs","repos_url":"https://api.github.com/users/estheryclin/repos","events_url":"https://api.github.com/users/estheryclin/events{/privacy}","received_events_url":"https://api.github.com/users/estheryclin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-09-23T09:50:06Z","updated_at":"2016-09-23T10:01:48Z","closed_at":null,"body":"Because we have had issues that data of two subjects cannot be segmented correctly.\r\nWe found that pypreprocess is using the probabilistic maps for SPM8\r\n'/i2bm/local/spm12/toolbox/OldSeg/grey.nii', \r\n'/i2bm/local/spm12/toolbox/OldSeg/white.nii', \r\n'/i2bm/local/spm12/toolbox/OldSeg/csf.nii'\r\n\r\nWhen we tried with the latest probabilistic maps for SPM12, it solved our problems.\r\n/i2bm/local/spm12/tmp/TMP.nii.1  % grey matter\r\n/i2bm/local/spm12/tmp/TMP.nii.2  % white matter\r\n/i2bm/local/spm12/tmp/TMP.nii.3  % CSF\r\n/i2bm/local/spm12/tmp/TMP.nii.4  % bone\r\n/i2bm/local/spm12/tmp/TMP.nii.5  % soft tissue\r\n/i2bm/local/spm12/tmp/TMP.nii.6  % air/background\r\n\r\nDo you have any concern to keep the SPM8 maps, or could it be updated to the SPM12 version?\r\nThanks!\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/neurospin/pypreprocess/issues/comments/249152252","html_url":"https://github.com/neurospin/pypreprocess/issues/254#issuecomment-249152252","issue_url":"https://api.github.com/repos/neurospin/pypreprocess/issues/254","id":249152252,"user":{"login":"mrahim","id":8612476,"avatar_url":"https://avatars.githubusercontent.com/u/8612476?v=3","gravatar_id":"","url":"https://api.github.com/users/mrahim","html_url":"https://github.com/mrahim","followers_url":"https://api.github.com/users/mrahim/followers","following_url":"https://api.github.com/users/mrahim/following{/other_user}","gists_url":"https://api.github.com/users/mrahim/gists{/gist_id}","starred_url":"https://api.github.com/users/mrahim/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mrahim/subscriptions","organizations_url":"https://api.github.com/users/mrahim/orgs","repos_url":"https://api.github.com/users/mrahim/repos","events_url":"https://api.github.com/users/mrahim/events{/privacy}","received_events_url":"https://api.github.com/users/mrahim/received_events","type":"User","site_admin":false},"created_at":"2016-09-23T10:01:48Z","updated_at":"2016-09-23T10:01:48Z","body":"Actually \"OldSeg\" in spm12 (equivalent to \"Segment\" in spm8) needs grey/white/csf.nii to carry the segmentation.\r\n\"Segment\" in spm12 (equivalent to \"NewSegment\" in spm8) needs TPM/tpm.nii.\r\n\r\nCould you copy/paste your script ?\r\n\r\n\r\n"}}
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