{"action":"opened","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1573","repository_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1573/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1573/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1573/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1573","id":179227021,"number":1573,"title":"HG38 and Gemini","user":{"login":"matthdsm","id":11850640,"avatar_url":"https://avatars.githubusercontent.com/u/11850640?v=3","gravatar_id":"","url":"https://api.github.com/users/matthdsm","html_url":"https://github.com/matthdsm","followers_url":"https://api.github.com/users/matthdsm/followers","following_url":"https://api.github.com/users/matthdsm/following{/other_user}","gists_url":"https://api.github.com/users/matthdsm/gists{/gist_id}","starred_url":"https://api.github.com/users/matthdsm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/matthdsm/subscriptions","organizations_url":"https://api.github.com/users/matthdsm/orgs","repos_url":"https://api.github.com/users/matthdsm/repos","events_url":"https://api.github.com/users/matthdsm/events{/privacy}","received_events_url":"https://api.github.com/users/matthdsm/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-09-26T13:22:21Z","updated_at":"2016-09-26T13:22:21Z","closed_at":null,"body":"Hello again,\r\n\r\nI was wondering if there are plans to overhaul the approach to gemini to support Hg38? According to [this thread](https://github.com/arq5x/gemini/issues/781) it's possible to use gemini with Hg38 using vcfanno and vcf2db. Do you think it is viable to replace the` gemini load` step with annotation by vcfanno and db loading with vcf2db? I suppose, this way it's possible to keep supporting hg19  and also build in some extra hg38 support.\r\n\r\nM\r\n\r\n"}}
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