{"action":"created","issue":{"url":"https://api.github.com/repos/lcdb/lcdb-workflows/issues/36","repository_url":"https://api.github.com/repos/lcdb/lcdb-workflows","labels_url":"https://api.github.com/repos/lcdb/lcdb-workflows/issues/36/labels{/name}","comments_url":"https://api.github.com/repos/lcdb/lcdb-workflows/issues/36/comments","events_url":"https://api.github.com/repos/lcdb/lcdb-workflows/issues/36/events","html_url":"https://github.com/lcdb/lcdb-workflows/pull/36","id":162258652,"number":36,"title":"References update 2","user":{"login":"daler","id":115406,"avatar_url":"https://avatars.githubusercontent.com/u/115406?v=3","gravatar_id":"","url":"https://api.github.com/users/daler","html_url":"https://github.com/daler","followers_url":"https://api.github.com/users/daler/followers","following_url":"https://api.github.com/users/daler/following{/other_user}","gists_url":"https://api.github.com/users/daler/gists{/gist_id}","starred_url":"https://api.github.com/users/daler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/daler/subscriptions","organizations_url":"https://api.github.com/users/daler/orgs","repos_url":"https://api.github.com/users/daler/repos","events_url":"https://api.github.com/users/daler/events{/privacy}","received_events_url":"https://api.github.com/users/daler/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-06-25T02:27:10Z","updated_at":"2016-06-27T15:03:06Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/lcdb/lcdb-workflows/pulls/36","html_url":"https://github.com/lcdb/lcdb-workflows/pull/36","diff_url":"https://github.com/lcdb/lcdb-workflows/pull/36.diff","patch_url":"https://github.com/lcdb/lcdb-workflows/pull/36.patch"},"body":"- references snakefile can be run on its own to build all configured indexes etc\r\n- updated README accordingly\r\n- config now supports list of URLs. I needed this to be able to concatenate the human protein-coding and lncRNA transcriptome fastas, but it will be useful for ERCC spike-ins as well.\r\n- added a first draft of lcdb-init.py which may eventually become the way we set up a new experiment"},"comment":{"url":"https://api.github.com/repos/lcdb/lcdb-workflows/issues/comments/228772752","html_url":"https://github.com/lcdb/lcdb-workflows/pull/36#issuecomment-228772752","issue_url":"https://api.github.com/repos/lcdb/lcdb-workflows/issues/36","id":228772752,"user":{"login":"daler","id":115406,"avatar_url":"https://avatars.githubusercontent.com/u/115406?v=3","gravatar_id":"","url":"https://api.github.com/users/daler","html_url":"https://github.com/daler","followers_url":"https://api.github.com/users/daler/followers","following_url":"https://api.github.com/users/daler/following{/other_user}","gists_url":"https://api.github.com/users/daler/gists{/gist_id}","starred_url":"https://api.github.com/users/daler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/daler/subscriptions","organizations_url":"https://api.github.com/users/daler/orgs","repos_url":"https://api.github.com/users/daler/repos","events_url":"https://api.github.com/users/daler/events{/privacy}","received_events_url":"https://api.github.com/users/daler/received_events","type":"User","site_admin":false},"created_at":"2016-06-27T15:03:06Z","updated_at":"2016-06-27T15:03:06Z","body":"I hadn't deleted the entire references-test to re-run (takes a while to rebuild). Looks like the post-process functions need to be updated to support lists rather than single downloaded files. I'll push some updates once I build in a new references dir."}}
{"actor":{"display_login":"daler"}}