{"action":"created","issue":{"url":"https://api.github.com/repos/dereneaton/ipyrad/issues/170","repository_url":"https://api.github.com/repos/dereneaton/ipyrad","labels_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/170/labels{/name}","comments_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/170/comments","events_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/170/events","html_url":"https://github.com/dereneaton/ipyrad/issues/170","id":167345979,"number":170,"title":"User Error - CRC check fails","user":{"login":"isaacovercast","id":5974975,"avatar_url":"https://avatars.githubusercontent.com/u/5974975?v=3","gravatar_id":"","url":"https://api.github.com/users/isaacovercast","html_url":"https://github.com/isaacovercast","followers_url":"https://api.github.com/users/isaacovercast/followers","following_url":"https://api.github.com/users/isaacovercast/following{/other_user}","gists_url":"https://api.github.com/users/isaacovercast/gists{/gist_id}","starred_url":"https://api.github.com/users/isaacovercast/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/isaacovercast/subscriptions","organizations_url":"https://api.github.com/users/isaacovercast/orgs","repos_url":"https://api.github.com/users/isaacovercast/repos","events_url":"https://api.github.com/users/isaacovercast/events{/privacy}","received_events_url":"https://api.github.com/users/isaacovercast/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-07-25T11:37:27Z","updated_at":"2016-07-26T11:27:53Z","closed_at":"2016-07-26T11:27:53Z","body":"I thought we'd seen this before but i forget what the problem was. Yaoxin reports this:\r\n\r\n```\r\n===================the error message===============================\r\n[yaoxin@smp01 sy_20160716]$ ipyrad -f -p params-youdan.txt -s 1 -c 45      \r\n\r\n --------------------------------------------------\r\n  ipyrad [v.0.3.20]\r\n  Interactive assembly and analysis of RADseq data\r\n --------------------------------------------------\r\n  New Assembly: youdan\r\n  ipyparallel setup: Local connection to 45 Engines\r\n\r\n  Step1: Linking sorted fastq data to Samples\r\n    Linking to demultiplexed fastq files in:\r\n      /lustre/home/yaoxin/data/rad/sy_20160716/data01/*.fq.gz\r\nERROR:ipyrad.core.assembly:IOError: CRC check failed 0x7c9e787c != 0x2c514cdbL\r\n\r\nTraceback (most recent call last):\r\n  File \"/lustre/home/yaoxin/miniconda2/bin/ipyrad\", line 9, in <module>\r\n    load_entry_point('ipyrad==0.3.20', 'console_scripts', 'ipyrad')()\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/__main__.py\", line 456, in main\r\n    data.run(steps=steps, force=args.force, preview=args.preview)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py\", line 1410, in run\r\n    self.step1(force=force, preview=preview)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py\", line 1228, in step1\r\n    self._clientwrapper(self._step1func, [force, preview], 45)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py\", line 864, in _clientwrapper\r\n    stepfunc(*args)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py\", line 994, in _step1func\r\n    self.link_fastqs()\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py\", line 449, in link_fastqs\r\n    nreads += bufcountlines(alltuples[0], gzipped)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py\", line 1589, in bufcountlines\r\n    buf = read_f(buf_size)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/gzip.py\", line 268, in read\r\n    self._read(readsize)\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/gzip.py\", line 315, in _read\r\n    self._read_eof()\r\n  File \"/lustre/home/yaoxin/miniconda2/lib/python2.7/gzip.py\", line 354, in _read_eof\r\n    hex(self.crc)))\r\nIOError: CRC check failed 0x7c9e787c != 0x2c514cdbL\r\n```\r\nI'm having them update to newest version, but i don't think that'll fix it...."},"comment":{"url":"https://api.github.com/repos/dereneaton/ipyrad/issues/comments/235241155","html_url":"https://github.com/dereneaton/ipyrad/issues/170#issuecomment-235241155","issue_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/170","id":235241155,"user":{"login":"isaacovercast","id":5974975,"avatar_url":"https://avatars.githubusercontent.com/u/5974975?v=3","gravatar_id":"","url":"https://api.github.com/users/isaacovercast","html_url":"https://github.com/isaacovercast","followers_url":"https://api.github.com/users/isaacovercast/followers","following_url":"https://api.github.com/users/isaacovercast/following{/other_user}","gists_url":"https://api.github.com/users/isaacovercast/gists{/gist_id}","starred_url":"https://api.github.com/users/isaacovercast/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/isaacovercast/subscriptions","organizations_url":"https://api.github.com/users/isaacovercast/orgs","repos_url":"https://api.github.com/users/isaacovercast/repos","events_url":"https://api.github.com/users/isaacovercast/events{/privacy}","received_events_url":"https://api.github.com/users/isaacovercast/received_events","type":"User","site_admin":false},"created_at":"2016-07-26T11:27:53Z","updated_at":"2016-07-26T11:27:53Z","body":"Fixed their own problem, some kind of issue with the demultiplexed reads being imported. From the user: \"The reason making the error is that i didn't give the full direction of folder containing demultiplexed data. It should be like ./data01/*.gz, but I just imput data01.\"\r\n\r\nI can't reproduce this, even though i tried.... "}}
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