{"action":"created","issue":{"url":"https://api.github.com/repos/widdowquinn/pyani/issues/46","repository_url":"https://api.github.com/repos/widdowquinn/pyani","labels_url":"https://api.github.com/repos/widdowquinn/pyani/issues/46/labels{/name}","comments_url":"https://api.github.com/repos/widdowquinn/pyani/issues/46/comments","events_url":"https://api.github.com/repos/widdowquinn/pyani/issues/46/events","html_url":"https://github.com/widdowquinn/pyani/issues/46","id":189388548,"number":46,"title":"module object has no attribute run","user":{"login":"swuyts","id":12883635,"avatar_url":"https://avatars.githubusercontent.com/u/12883635?v=3","gravatar_id":"","url":"https://api.github.com/users/swuyts","html_url":"https://github.com/swuyts","followers_url":"https://api.github.com/users/swuyts/followers","following_url":"https://api.github.com/users/swuyts/following{/other_user}","gists_url":"https://api.github.com/users/swuyts/gists{/gist_id}","starred_url":"https://api.github.com/users/swuyts/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/swuyts/subscriptions","organizations_url":"https://api.github.com/users/swuyts/orgs","repos_url":"https://api.github.com/users/swuyts/repos","events_url":"https://api.github.com/users/swuyts/events{/privacy}","received_events_url":"https://api.github.com/users/swuyts/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-11-15T13:14:31Z","updated_at":"2016-11-15T15:46:28Z","closed_at":"2016-11-15T13:43:49Z","body":"Hi there,\r\n\r\nI've recently installed pyani and tried to run it using 8 cores with the following command:\r\n\r\n`average_nucleotide_identity.py -i $pin -o $pout -m ANIb --workers 8`\r\n\r\nThis leads to the following error output:\r\n\r\n\r\n`Traceback (most recent call last):\r\n  File \"/usr/local/bin/average_nucleotide_identity.py\", line 806, in <module>\r\n    results = methods[args.method][0](infiles, org_lengths)\r\n  File \"/usr/local/bin/average_nucleotide_identity.py\", line 532, in unified_anib\r\n    logger=logger)\r\n  File \"/usr/local/lib/python3.4/dist-packages/pyani/run_multiprocessing.py\", line 45, in run_dependency_graph\r\n    cumretval += multiprocessing_run(cmdset, workers, verbose)\r\n  File \"/usr/local/lib/python3.4/dist-packages/pyani/run_multiprocessing.py\", line 86, in multiprocessing_run\r\n    for cline in cmdlines]\r\n  File \"/usr/local/lib/python3.4/dist-packages/pyani/run_multiprocessing.py\", line 86, in <listcomp>\r\n    for cline in cmdlines]\r\nAttributeError: 'module' object has no attribute 'run'`\r\n\r\nI've checked and module seems to be installed correctly in my ptyhon3.4. Am I doing something wrong, or do you have any advice to overcome this?\r\n\r\nThanks in advance,\r\nSander\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/widdowquinn/pyani/issues/comments/260677346","html_url":"https://github.com/widdowquinn/pyani/issues/46#issuecomment-260677346","issue_url":"https://api.github.com/repos/widdowquinn/pyani/issues/46","id":260677346,"user":{"login":"swuyts","id":12883635,"avatar_url":"https://avatars.githubusercontent.com/u/12883635?v=3","gravatar_id":"","url":"https://api.github.com/users/swuyts","html_url":"https://github.com/swuyts","followers_url":"https://api.github.com/users/swuyts/followers","following_url":"https://api.github.com/users/swuyts/following{/other_user}","gists_url":"https://api.github.com/users/swuyts/gists{/gist_id}","starred_url":"https://api.github.com/users/swuyts/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/swuyts/subscriptions","organizations_url":"https://api.github.com/users/swuyts/orgs","repos_url":"https://api.github.com/users/swuyts/repos","events_url":"https://api.github.com/users/swuyts/events{/privacy}","received_events_url":"https://api.github.com/users/swuyts/received_events","type":"User","site_admin":false},"created_at":"2016-11-15T15:46:28Z","updated_at":"2016-11-15T15:46:28Z","body":"My apologies,\r\n\r\nI've must have read over the fact that Python >= 3.5 is needed.\r\n\r\nThanks for the fast support!"}}
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