{"action":"closed","issue":{"url":"https://api.github.com/repos/ryanlayer/gqt/issues/34","repository_url":"https://api.github.com/repos/ryanlayer/gqt","labels_url":"https://api.github.com/repos/ryanlayer/gqt/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/ryanlayer/gqt/issues/34/comments","events_url":"https://api.github.com/repos/ryanlayer/gqt/issues/34/events","html_url":"https://github.com/ryanlayer/gqt/issues/34","id":142832629,"number":34,"title":"perhaps a typo in functional_tests.sh","user":{"login":"hillan141","id":2381784,"avatar_url":"https://avatars.githubusercontent.com/u/2381784?v=3","gravatar_id":"","url":"https://api.github.com/users/hillan141","html_url":"https://github.com/hillan141","followers_url":"https://api.github.com/users/hillan141/followers","following_url":"https://api.github.com/users/hillan141/following{/other_user}","gists_url":"https://api.github.com/users/hillan141/gists{/gist_id}","starred_url":"https://api.github.com/users/hillan141/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hillan141/subscriptions","organizations_url":"https://api.github.com/users/hillan141/orgs","repos_url":"https://api.github.com/users/hillan141/repos","events_url":"https://api.github.com/users/hillan141/events{/privacy}","received_events_url":"https://api.github.com/users/hillan141/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-03-23T01:51:47Z","updated_at":"2016-03-23T15:20:24Z","closed_at":"2016-03-23T15:20:23Z","body":"Thanks for providing this tool.  Upon installing today, functional_tests.sh failed on RHEL5 with error:\r\n\r\nSUCCESS(555): GQT count matches BCFTOOLS count\r\n./functional_tests.sh: line 565: BCFTOOLS: command not found\r\ntail: cannot open `../data/A_vs_B.weir.fst' for reading: No such file or directory\r\nERROR(603): GQT Fst does not match VCFTOOLS fst\r\ncat: ../data/A_vs_B.weir.fst: No such file or directory\r\n\r\nOn line 565, replacing 'BCFTOOLS' with '$BCFTOOLS' resolved issue in my environment.  \r\n"}}