{"action":"created","issue":{"url":"https://api.github.com/repos/rcannood/SCORPIUS/issues/4","repository_url":"https://api.github.com/repos/rcannood/SCORPIUS","labels_url":"https://api.github.com/repos/rcannood/SCORPIUS/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/rcannood/SCORPIUS/issues/4/comments","events_url":"https://api.github.com/repos/rcannood/SCORPIUS/issues/4/events","html_url":"https://github.com/rcannood/SCORPIUS/issues/4","id":181615981,"number":4,"title":"ginhoux.R","user":{"login":"doublehelixlf","id":13241735,"avatar_url":"https://avatars.githubusercontent.com/u/13241735?v=3","gravatar_id":"","url":"https://api.github.com/users/doublehelixlf","html_url":"https://github.com/doublehelixlf","followers_url":"https://api.github.com/users/doublehelixlf/followers","following_url":"https://api.github.com/users/doublehelixlf/following{/other_user}","gists_url":"https://api.github.com/users/doublehelixlf/gists{/gist_id}","starred_url":"https://api.github.com/users/doublehelixlf/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/doublehelixlf/subscriptions","organizations_url":"https://api.github.com/users/doublehelixlf/orgs","repos_url":"https://api.github.com/users/doublehelixlf/repos","events_url":"https://api.github.com/users/doublehelixlf/events{/privacy}","received_events_url":"https://api.github.com/users/doublehelixlf/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2016-10-07T08:53:17Z","updated_at":"2016-10-07T11:37:11Z","closed_at":null,"body":"Hi SCORPIUS authors,\r\nI saw your MS on bioRxiv and am very interested in using it for our scRNA-seq experiment. Nevertheless, I did a pre-run using your ginhoux.R file (with the ginhoux dataset), and the heatmap only showed 3 groups. Indeed, it looks quite different from the one shown in the vignette (png is attached). Could you take a look at it, let me know how to reproduce the 6 groups as shown in your paper ?\r\n\r\nThanks and regards,\r\nFeng\r\n\r\n![image](https://cloud.githubusercontent.com/assets/13241735/19184043/cff524f8-8cad-11e6-9f9d-e0007006cf66.png)\r\n"},"comment":{"url":"https://api.github.com/repos/rcannood/SCORPIUS/issues/comments/252228902","html_url":"https://github.com/rcannood/SCORPIUS/issues/4#issuecomment-252228902","issue_url":"https://api.github.com/repos/rcannood/SCORPIUS/issues/4","id":252228902,"user":{"login":"rcannood","id":553642,"avatar_url":"https://avatars.githubusercontent.com/u/553642?v=3","gravatar_id":"","url":"https://api.github.com/users/rcannood","html_url":"https://github.com/rcannood","followers_url":"https://api.github.com/users/rcannood/followers","following_url":"https://api.github.com/users/rcannood/following{/other_user}","gists_url":"https://api.github.com/users/rcannood/gists{/gist_id}","starred_url":"https://api.github.com/users/rcannood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rcannood/subscriptions","organizations_url":"https://api.github.com/users/rcannood/orgs","repos_url":"https://api.github.com/users/rcannood/repos","events_url":"https://api.github.com/users/rcannood/events{/privacy}","received_events_url":"https://api.github.com/users/rcannood/received_events","type":"User","site_admin":false},"created_at":"2016-10-07T11:37:11Z","updated_at":"2016-10-07T11:37:11Z","body":"There seems to be something wrong with the factors being generated by `gene.importances`.\r\n\r\nFor a quick fix, you can use `expr.sel <- expression[,as.character(gene.sel$gene)]`. Does this solve your problem?\r\n\r\nI'll fix the problem in the package so that the error cannot occur anymore."}}
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