{"action":"opened","issue":{"url":"https://api.github.com/repos/EddyRivasLab/hmmer/issues/76","repository_url":"https://api.github.com/repos/EddyRivasLab/hmmer","labels_url":"https://api.github.com/repos/EddyRivasLab/hmmer/issues/76/labels{/name}","comments_url":"https://api.github.com/repos/EddyRivasLab/hmmer/issues/76/comments","events_url":"https://api.github.com/repos/EddyRivasLab/hmmer/issues/76/events","html_url":"https://github.com/EddyRivasLab/hmmer/issues/76","id":197715882,"number":76,"title":"hmmscan output of HMM names/descriptions corrupted somehow","user":{"login":"traviswheeler","id":737207,"avatar_url":"https://avatars.githubusercontent.com/u/737207?v=3","gravatar_id":"","url":"https://api.github.com/users/traviswheeler","html_url":"https://github.com/traviswheeler","followers_url":"https://api.github.com/users/traviswheeler/followers","following_url":"https://api.github.com/users/traviswheeler/following{/other_user}","gists_url":"https://api.github.com/users/traviswheeler/gists{/gist_id}","starred_url":"https://api.github.com/users/traviswheeler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/traviswheeler/subscriptions","organizations_url":"https://api.github.com/users/traviswheeler/orgs","repos_url":"https://api.github.com/users/traviswheeler/repos","events_url":"https://api.github.com/users/traviswheeler/events{/privacy}","received_events_url":"https://api.github.com/users/traviswheeler/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/EddyRivasLab/hmmer/milestones/3","html_url":"https://github.com/EddyRivasLab/hmmer/milestone/3","labels_url":"https://api.github.com/repos/EddyRivasLab/hmmer/milestones/3/labels","id":2217617,"number":3,"title":"3.0b3","description":null,"creator":{"login":"traviswheeler","id":737207,"avatar_url":"https://avatars.githubusercontent.com/u/737207?v=3","gravatar_id":"","url":"https://api.github.com/users/traviswheeler","html_url":"https://github.com/traviswheeler","followers_url":"https://api.github.com/users/traviswheeler/followers","following_url":"https://api.github.com/users/traviswheeler/following{/other_user}","gists_url":"https://api.github.com/users/traviswheeler/gists{/gist_id}","starred_url":"https://api.github.com/users/traviswheeler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/traviswheeler/subscriptions","organizations_url":"https://api.github.com/users/traviswheeler/orgs","repos_url":"https://api.github.com/users/traviswheeler/repos","events_url":"https://api.github.com/users/traviswheeler/events{/privacy}","received_events_url":"https://api.github.com/users/traviswheeler/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":8,"state":"open","created_at":"2016-12-27T15:10:03Z","updated_at":"2016-12-27T15:10:32Z","due_on":null,"closed_at":null},"comments":0,"created_at":"2016-12-27T15:10:32Z","updated_at":"2016-12-27T15:10:32Z","closed_at":null,"body":"\nID              h66\nTITLE           hmmscan output of HMM names/descriptions corrupted somehow\nAFFECTS         3.0b2?\nFIXED_IN        3.0b3\nSTATUS          CLOSED\nXREF            J5/105\nREPORTED_BY     Jaina Mistry <jm14@sanger.ac.uk> 11 Nov 2009\nOPENED_DATE     SRE, Thu Nov 12 10:40:50 2009\nCLOSED_DATE     SRE, Fri Nov 13 07:27:14 2009\nDESCRIPTION     \n   Under circumstances that have not been identified:\n   hmmscan ASCII output replaces HMM \"<name> <description>\\n\" with\n   \"<name>\"; the loss of the newline corrupts the output and breaks\n   parsers including pfam_scan.pl.\n\n   Jaina reports an example of it occurring on an \"older\" Opteron\n   running SUSE Linux. It does not happen on our Opteron/SUSE system.\n   There is no apparent problem in the source. One suspicion is the\n   crossplatform binary compatibility of press'ed HMM databases.\n\n   This appears to be a bug on the Opteron/SUSE, with its handling\n   of the \"%-.*s\" precision in fprintf() when the precision is set\n   to INT_MAX. OK, maybe that was asking a little much of it. Changed\n   the way unlimited line length is handled; now it formats\n   unlimited desc lines simply as \"%s\".\n"}}
{"actor":{"display_login":"traviswheeler"}}