{"action":"created","issue":{"url":"https://api.github.com/repos/pypa/manylinux/issues/60","repository_url":"https://api.github.com/repos/pypa/manylinux","labels_url":"https://api.github.com/repos/pypa/manylinux/issues/60/labels{/name}","comments_url":"https://api.github.com/repos/pypa/manylinux/issues/60/comments","events_url":"https://api.github.com/repos/pypa/manylinux/issues/60/events","html_url":"https://github.com/pypa/manylinux/issues/60","id":152192845,"number":60,"title":"Double library references after auditwheel repair","user":{"login":"estan","id":86675,"avatar_url":"https://avatars.githubusercontent.com/u/86675?v=3","gravatar_id":"","url":"https://api.github.com/users/estan","html_url":"https://github.com/estan","followers_url":"https://api.github.com/users/estan/followers","following_url":"https://api.github.com/users/estan/following{/other_user}","gists_url":"https://api.github.com/users/estan/gists{/gist_id}","starred_url":"https://api.github.com/users/estan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/estan/subscriptions","organizations_url":"https://api.github.com/users/estan/orgs","repos_url":"https://api.github.com/users/estan/repos","events_url":"https://api.github.com/users/estan/events{/privacy}","received_events_url":"https://api.github.com/users/estan/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/pypa/manylinux/labels/bug","name":"bug","color":"fc2929"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":10,"created_at":"2016-05-01T10:33:22Z","updated_at":"2016-05-09T13:15:43Z","closed_at":null,"body":"Sorry if this is obvious, but I tried for fun to manually create an anylinux wheel for h5py from a shell inside the provided x64 Docker container. However, it seems the rpath fixup didn't go too well for libz:\r\n\r\nAfter the fixed up wheel was installed:\r\n\r\n```\r\n[root@a6722ca968b0 h5py-master]# ldd /opt/_internal/cpython-3.4.4/lib/python3.4/site-packages/h5py/h5a.cpython-34m.so\r\n        linux-vdso.so.1 =>  (0x00007ffe2095d000)\r\n        libhdf5-eb619e28.so.100.0.0 => /opt/_internal/cpython-3.4.4/lib/python3.4/site-packages/h5py/.libs/libhdf5-eb619e28.so.100.0.0 (0x00007f3e80eb2000)\r\n        libhdf5_hl-250248ee.so.100.0.0 => /opt/_internal/cpython-3.4.4/lib/python3.4/site-packages/h5py/.libs/libhdf5_hl-250248ee.so.100.0.0 (0x00007f3e80c89000)\r\n        libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f3e80a67000)\r\n        libc.so.6 => /lib64/libc.so.6 (0x00007f3e8070e000)\r\n        librt.so.1 => /lib64/librt.so.1 (0x00007f3e80504000)\r\n        libz-a147dcb0.so.1.2.3 => not found\r\n        libdl.so.2 => /lib64/libdl.so.2 (0x00007f3e80300000)\r\n        libm.so.6 => /lib64/libm.so.6 (0x00007f3e8007c000)\r\n        libz-a147dcb0.so.1.2.3 => /opt/_internal/cpython-3.4.4/lib/python3.4/site-packages/h5py/.libs/./libz-a147dcb0.so.1.2.3 (0x00007f3e7fe67000)\r\n        /lib64/ld-linux-x86-64.so.2 (0x00005606a1cff000)\r\n```\r\n\r\nNotice the two references to `libz-a147dcb0.so.1.2.3`, one of them found, the other one not. Any idea what could have gone wrong, or how I can debug further? The bundling of libhdf5 seems to have worked fine."},"comment":{"url":"https://api.github.com/repos/pypa/manylinux/issues/comments/217860824","html_url":"https://github.com/pypa/manylinux/issues/60#issuecomment-217860824","issue_url":"https://api.github.com/repos/pypa/manylinux/issues/60","id":217860824,"user":{"login":"estan","id":86675,"avatar_url":"https://avatars.githubusercontent.com/u/86675?v=3","gravatar_id":"","url":"https://api.github.com/users/estan","html_url":"https://github.com/estan","followers_url":"https://api.github.com/users/estan/followers","following_url":"https://api.github.com/users/estan/following{/other_user}","gists_url":"https://api.github.com/users/estan/gists{/gist_id}","starred_url":"https://api.github.com/users/estan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/estan/subscriptions","organizations_url":"https://api.github.com/users/estan/orgs","repos_url":"https://api.github.com/users/estan/repos","events_url":"https://api.github.com/users/estan/events{/privacy}","received_events_url":"https://api.github.com/users/estan/received_events","type":"User","site_admin":false},"created_at":"2016-05-09T13:15:43Z","updated_at":"2016-05-09T13:15:43Z","body":"Or wait, now I think I see what you mean. So perhaps my problem could be worked around by install HDF5 to prefix /usr? I'll give it a try."}}