{"action":"created","comment":{"url":"https://api.github.com/repos/mantidproject/mantid/pulls/comments/59146442","id":59146442,"diff_hunk":"@@ -0,0 +1,285 @@\n+#include \"MantidDataHandling/H5Util.h\"\n+#include \"MantidKernel/System.h\"\n+#include \"MantidAPI/LogManager.h\"\n+\n+#include <H5Cpp.h>\n+#include <algorithm>\n+#include <boost/numeric/conversion/cast.hpp>\n+\n+using namespace H5;\n+\n+namespace Mantid {\n+namespace DataHandling {\n+namespace H5Util {\n+\n+namespace {\n+/// static logger object\n+Mantid::Kernel::Logger g_log(\"H5Util\");\n+\n+const std::string NX_ATTR_CLASS(\"NX_class\");\n+} // anonymous\n+\n+// -------------------------------------------------------------------\n+// convert primitives to HDF5 enum\n+// -------------------------------------------------------------------\n+\n+template <typename NumT> DataType getType() { throw DataTypeIException(); }\n+\n+template <> MANTID_DATAHANDLING_DLL DataType getType<float>() {\n+  return PredType::NATIVE_FLOAT;\n+}\n+\n+template <> MANTID_DATAHANDLING_DLL DataType getType<double>() {\n+  return PredType::NATIVE_DOUBLE;\n+}\n+\n+template <> MANTID_DATAHANDLING_DLL DataType getType<int32_t>() {\n+  return PredType::NATIVE_INT32;\n+}\n+\n+template <> MANTID_DATAHANDLING_DLL DataType getType<uint32_t>() {\n+  return PredType::NATIVE_UINT32;\n+}\n+\n+template <> MANTID_DATAHANDLING_DLL DataType getType<int64_t>() {\n+  return PredType::NATIVE_INT64;\n+}\n+\n+template <> MANTID_DATAHANDLING_DLL DataType getType<uint64_t>() {\n+  return PredType::NATIVE_UINT64;\n+}\n+\n+// -------------------------------------------------------------------\n+// write methods\n+// -------------------------------------------------------------------\n+\n+Group createGroupNXS(H5File &file, const std::string &name,\n+                     const std::string &nxtype) {\n+  auto group = file.createGroup(name);\n+  writeStrAttribute(group, NX_ATTR_CLASS, nxtype);\n+  return group;\n+}\n+\n+Group createGroupNXS(Group &group, const std::string &name,\n+                     const std::string &nxtype) {\n+  auto outGroup = group.createGroup(name);\n+  writeStrAttribute(outGroup, NX_ATTR_CLASS, nxtype);\n+  return outGroup;\n+}\n+\n+DataSpace getDataSpace(const size_t length) {\n+  hsize_t dims[] = {length};\n+  return DataSpace(1, dims);\n+}\n+\n+template <typename NumT> DataSpace getDataSpace(const std::vector<NumT> &data) {\n+  return H5Util::getDataSpace(data.size());\n+}\n+\n+DSetCreatPropList setCompressionAttributes(const std::size_t length,\n+                                           const int deflateLevel) {\n+  DSetCreatPropList propList;\n+  hsize_t chunk_dims[1] = {length};\n+  propList.setChunk(1, chunk_dims);\n+  propList.setDeflate(deflateLevel);\n+  return propList;\n+}\n+\n+void writeStrAttribute(Group &location, const std::string &name,\n+                       const std::string &value) {\n+  StrType attrType(0, H5T_VARIABLE);\n+  DataSpace attrSpace(H5S_SCALAR);\n+  auto groupAttr = location.createAttribute(name, attrType, attrSpace);\n+  groupAttr.write(attrType, value);\n+}\n+\n+void write(Group &group, const std::string &name, const std::string &value) {\n+  StrType dataType(0, value.length() + 1);\n+  DataSpace dataSpace = getDataSpace(1);\n+  H5::DataSet data = group.createDataSet(name, dataType, dataSpace);\n+  data.write(value, dataType);\n+}\n+\n+template <typename NumT>\n+void writeArray1D(Group &group, const std::string &name,\n+                  const std::vector<NumT> &values) {\n+  DataType dataType(getType<NumT>());\n+  DataSpace dataSpace = getDataSpace(values);\n+\n+  DSetCreatPropList propList = setCompressionAttributes(values.size());\n+\n+  auto data = group.createDataSet(name, dataType, dataSpace, propList);\n+  data.write(&(values[0]), dataType);","path":"Framework/DataHandling/src/H5Util.cpp","position":112,"original_position":112,"commit_id":"bfdb8240dd1e1046940e74b37b5ee9bbe0f7647b","original_commit_id":"bfdb8240dd1e1046940e74b37b5ee9bbe0f7647b","user":{"login":"quantumsteve","id":5920552,"avatar_url":"https://avatars.githubusercontent.com/u/5920552?v=3","gravatar_id":"","url":"https://api.github.com/users/quantumsteve","html_url":"https://github.com/quantumsteve","followers_url":"https://api.github.com/users/quantumsteve/followers","following_url":"https://api.github.com/users/quantumsteve/following{/other_user}","gists_url":"https://api.github.com/users/quantumsteve/gists{/gist_id}","starred_url":"https://api.github.com/users/quantumsteve/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/quantumsteve/subscriptions","organizations_url":"https://api.github.com/users/quantumsteve/orgs","repos_url":"https://api.github.com/users/quantumsteve/repos","events_url":"https://api.github.com/users/quantumsteve/events{/privacy}","received_events_url":"https://api.github.com/users/quantumsteve/received_events","type":"User","site_admin":false},"body":"use `values.data()`","created_at":"2016-04-11T01:22:45Z","updated_at":"2016-04-11T01:22:45Z","html_url":"https://github.com/mantidproject/mantid/pull/15852#discussion_r59146442","pull_request_url":"https://api.github.com/repos/mantidproject/mantid/pulls/15852","_links":{"self":{"href":"https://api.github.com/repos/mantidproject/mantid/pulls/comments/59146442"},"html":{"href":"https://github.com/mantidproject/mantid/pull/15852#discussion_r59146442"},"pull_request":{"href":"https://api.github.com/repos/mantidproject/mantid/pulls/15852"}}},"pull_request":{"url":"https://api.github.com/repos/mantidproject/mantid/pulls/15852","id":65511552,"html_url":"https://github.com/mantidproject/mantid/pull/15852","diff_url":"https://github.com/mantidproject/mantid/pull/15852.diff","patch_url":"https://github.com/mantidproject/mantid/pull/15852.patch","issue_url":"https://api.github.com/repos/mantidproject/mantid/issues/15852","number":15852,"state":"open","locked":false,"title":"H5Utils","user":{"login":"peterfpeterson","id":404003,"avatar_url":"https://avatars.githubusercontent.com/u/404003?v=3","gravatar_id":"","url":"https://api.github.com/users/peterfpeterson","html_url":"https://github.com/peterfpeterson","followers_url":"https://api.github.com/users/peterfpeterson/followers","following_url":"https://api.github.com/users/peterfpeterson/following{/other_user}","gists_url":"https://api.github.com/users/peterfpeterson/gists{/gist_id}","starred_url":"https://api.github.com/users/peterfpeterson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterfpeterson/subscriptions","organizations_url":"https://api.github.com/users/peterfpeterson/orgs","repos_url":"https://api.github.com/users/peterfpeterson/repos","events_url":"https://api.github.com/users/peterfpeterson/events{/privacy}","received_events_url":"https://api.github.com/users/peterfpeterson/received_events","type":"User","site_admin":false},"body":"This is a central location to collect common usage of the [HDF high level API](https://www.hdfgroup.org/HDF5/doc/cpplus_RM/index.html). It is not intended to be complete.\r\n\r\n**To test:**\r\n\r\nShould be a code review. Make new issues for missing functionality. However, errors need to be fixed.\r\n\r\n*Does not need to be in the release notes.* It is a developer facing change.\r\n\r\n---\r\n\r\n#### Reviewer ####\r\n\r\nPlease comment on the following ([full description](http://www.mantidproject.org/Individual_Ticket_Testing)):\r\n\r\n##### Code Review #####\r\n\r\n- [ ] Is the code of an acceptable quality?\r\n- [ ] Does the code conform to the coding standards? Is it well structured with small focussed classes/methods/functions?\r\n- [ ] Are there unit/system tests in place? Are the unit tests small and test the a class in isolation?\r\n- [ ] If there are changes in the release notes then do they describe the changes appropriately?\r\n\r\n##### Functional Tests #####\r\n\r\n- [ ] Do changes function as described? 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A member of `@mantidproject/gatekeepers` will take care of 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