{"action":"created","issue":{"url":"https://api.github.com/repos/TIGRLab/admin/issues/645","repository_url":"https://api.github.com/repos/TIGRLab/admin","labels_url":"https://api.github.com/repos/TIGRLab/admin/issues/645/labels{/name}","comments_url":"https://api.github.com/repos/TIGRLab/admin/issues/645/comments","events_url":"https://api.github.com/repos/TIGRLab/admin/issues/645/events","html_url":"https://github.com/TIGRLab/admin/issues/645","id":167958283,"number":645,"title":"rerun pipeline output for freesurfer w/out FSL/5.0.9 loaded","user":{"login":"edickie","id":13203958,"avatar_url":"https://avatars.githubusercontent.com/u/13203958?v=3","gravatar_id":"","url":"https://api.github.com/users/edickie","html_url":"https://github.com/edickie","followers_url":"https://api.github.com/users/edickie/followers","following_url":"https://api.github.com/users/edickie/following{/other_user}","gists_url":"https://api.github.com/users/edickie/gists{/gist_id}","starred_url":"https://api.github.com/users/edickie/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/edickie/subscriptions","organizations_url":"https://api.github.com/users/edickie/orgs","repos_url":"https://api.github.com/users/edickie/repos","events_url":"https://api.github.com/users/edickie/events{/privacy}","received_events_url":"https://api.github.com/users/edickie/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-07-27T21:14:10Z","updated_at":"2016-07-27T23:53:10Z","closed_at":null,"body":"I'm writing this here for posterity,\r\n\r\nWe recently noticed that loading FSL/5.0.9 and freesurfer at the same time leads to less than ideal freesurfer performance. We are now working to regerate all the scc side freesurfer runs with a cleaner freesurfer enviroment.."},"comment":{"url":"https://api.github.com/repos/TIGRLab/admin/issues/comments/235756772","html_url":"https://github.com/TIGRLab/admin/issues/645#issuecomment-235756772","issue_url":"https://api.github.com/repos/TIGRLab/admin/issues/645","id":235756772,"user":{"login":"pipitone","id":509382,"avatar_url":"https://avatars.githubusercontent.com/u/509382?v=3","gravatar_id":"","url":"https://api.github.com/users/pipitone","html_url":"https://github.com/pipitone","followers_url":"https://api.github.com/users/pipitone/followers","following_url":"https://api.github.com/users/pipitone/following{/other_user}","gists_url":"https://api.github.com/users/pipitone/gists{/gist_id}","starred_url":"https://api.github.com/users/pipitone/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pipitone/subscriptions","organizations_url":"https://api.github.com/users/pipitone/orgs","repos_url":"https://api.github.com/users/pipitone/repos","events_url":"https://api.github.com/users/pipitone/events{/privacy}","received_events_url":"https://api.github.com/users/pipitone/received_events","type":"User","site_admin":false},"created_at":"2016-07-27T23:53:09Z","updated_at":"2016-07-27T23:53:09Z","body":"womp womp\n\nOn Wed, Jul 27, 2016, at 07:50 PM, edickie wrote:\n> The annoying thing is that many HCP and epitome pipelines use a\n> combination\n> of FSL and freesurfer tools, so setting a conflict could cause more harm\n> than good. :-(\n> \n> On Wed, Jul 27, 2016 at 6:31 PM, Jon Pipitone <notifications@github.com>\n> wrote:\n> \n> > To stop this from happening in the future,, one thing you can do is add\n> > a conflict statement to the freesurfer module, e.g.\n> >\n> > conflict FSL\n> >\n> > That way, when you attempt to load both modules you'll get an error.\n> >\n> > —\n> > You are receiving this because you authored the thread.\n> > Reply to this email directly, view it on GitHub\n> > <https://github.com/TIGRLab/admin/issues/645#issuecomment-235741925>, or mute\n> > the thread\n> > <https://github.com/notifications/unsubscribe-auth/AMl59mGiaCXfHqNX98m2FEQsMR7hIRz4ks5qZ9xWgaJpZM4JWorQ>\n> > .\n> >\n> \n> \n> ---\n> You are receiving this because you commented.\n> Reply to this email directly or view it on GitHub:\n> https://github.com/TIGRLab/admin/issues/645#issuecomment-235756319\n"}}
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