{"action":"created","issue":{"url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation/issues/5","repository_url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation","labels_url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation/issues/5/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation/issues/5/comments","events_url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation/issues/5/events","html_url":"https://github.com/GMOD/docker-compose-galaxy-annotation/issues/5","id":159787504,"number":5,"title":"unable to create or add organism: ","user":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":11,"created_at":"2016-06-11T18:44:40Z","updated_at":"2016-06-14T00:54:30Z","closed_at":null,"body":"FYI @erasche   I think that this is an error in the wrapper somehow.  \r\n\r\nThe HTML error is:\r\n```\r\nHTTP Status 404 - /apollo/organism/index\r\n```\r\n\r\nThis would be correct because there is no index method (or index.gsp) for organism.  It could be callsed as /apollo/organism/ as well, which will default to organism. \r\n\r\n\r\nIt looks like the 'clientMethod' in self.request('<clientMethod>',data)  ignored.  Running \"List Organisms\" it fails the same way.  \r\n\r\n\r\n\r\nThe full error is this:\r\n\r\n```\r\nFatal error: Exit code 1 ()\r\nINFO:__main__:Determining if add or update required\r\nINFO:__main__:\tAdding Organism\r\nTraceback (most recent call last):\r\n  File \"/galaxy-central/tools/apollo/create_or_update_organism.py\", line 60, in <module>\r\n    public=args.public\r\n  File \"/galaxy-central/tools/apollo/webapollo.py\", line 550, in addOrganism\r\n    return self.request('addOrganism', data)\r\n  File \"/galaxy-central/tools/apollo/webapollo.py\", line 161, in request\r\n    (r.status_code, r.text))\r\nException: Unexpected response from apollo 404: <html><head><title>Apache Tomcat/7.0.69 - Error report</title><style><!--H1 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:22px;} H2 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:16px;} H3 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:14px;} BODY {font-family:Tahoma,Arial,sans-serif;color:black;background-color:white;} B {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;} P {font-family:Tahoma,Arial,sans-serif;background:white;color:black;font-size:12px;}A {color : black;}A.name {color : black;}HR {color : #525D76;}--></style> </head><body><h1>HTTP Status 404 - /apollo/organism/index</h1><HR size=\"1\" noshade=\"noshade\"><p><b>type</b> Status report</p><p><b>message</b> <u>/apollo/organism/index</u></p><p><b>description</b> <u>The requested resource is not available.</u></p><HR size=\"1\" noshade=\"noshade\"><h3>Apache Tomcat/7.0.69</h3></body></html>\r\n```"},"comment":{"url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation/issues/comments/225751715","html_url":"https://github.com/GMOD/docker-compose-galaxy-annotation/issues/5#issuecomment-225751715","issue_url":"https://api.github.com/repos/GMOD/docker-compose-galaxy-annotation/issues/5","id":225751715,"user":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"created_at":"2016-06-14T00:54:30Z","updated_at":"2016-06-14T00:54:30Z","body":"well, there was definitely a lot of redirect code in there before which I've fixed . . but it wouldn't have been triggered on yours"}}
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