{"action":"created","issue":{"url":"https://api.github.com/repos/COMBINE-lab/RapClust/issues/7","repository_url":"https://api.github.com/repos/COMBINE-lab/RapClust","labels_url":"https://api.github.com/repos/COMBINE-lab/RapClust/issues/7/labels{/name}","comments_url":"https://api.github.com/repos/COMBINE-lab/RapClust/issues/7/comments","events_url":"https://api.github.com/repos/COMBINE-lab/RapClust/issues/7/events","html_url":"https://github.com/COMBINE-lab/RapClust/issues/7","id":167856554,"number":7,"title":"index out of bounds error ","user":{"login":"jesgomez","id":11632100,"avatar_url":"https://avatars.githubusercontent.com/u/11632100?v=3","gravatar_id":"","url":"https://api.github.com/users/jesgomez","html_url":"https://github.com/jesgomez","followers_url":"https://api.github.com/users/jesgomez/followers","following_url":"https://api.github.com/users/jesgomez/following{/other_user}","gists_url":"https://api.github.com/users/jesgomez/gists{/gist_id}","starred_url":"https://api.github.com/users/jesgomez/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jesgomez/subscriptions","organizations_url":"https://api.github.com/users/jesgomez/orgs","repos_url":"https://api.github.com/users/jesgomez/repos","events_url":"https://api.github.com/users/jesgomez/events{/privacy}","received_events_url":"https://api.github.com/users/jesgomez/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2016-07-27T13:40:50Z","updated_at":"2016-08-29T21:09:53Z","closed_at":null,"body":"Hi,\r\nI'm trying to run Sailfish + Rapclust in my data. I had some RNAseq samples from several conditions and I assembled with Trinity each condition separately, obtaining 4 different transcriptomes. Now, I'm trying to cluster them together in order to get a unique transcriptome for the specie (instead of 1 per each condition), so I concatenated all the transcriptomes in a single multifasta file and tried to run sailfish and Rapclust as I usually do. I indexed the combined transcriptome with sailfish and quantified each sample without getting any error. But when I run Rapclust, I get the following error:\r\nTraceback (most recent call last):\r\n  File \"/apps/RAPCLUST/0.1/bin/RapClust\", line 89, in <module>\r\n    processQuant()\r\n  File \"/apps/RAPCLUST/0.1/lib/python2.7/site-packages/click/core.py\", line 716, in __call__\r\n    return self.main(*args, **kwargs)\r\n  File \"/apps/RAPCLUST/0.1/lib/python2.7/site-packages/click/core.py\", line 696, in main\r\n    rv = self.invoke(ctx)\r\n  File \"/apps/RAPCLUST/0.1/lib/python2.7/site-packages/click/core.py\", line 889, in invoke\r\n    return ctx.invoke(self.callback, **ctx.params)\r\n  File \"/apps/RAPCLUST/0.1/lib/python2.7/site-packages/click/core.py\", line 534, in invoke\r\n    return callback(*args, **kwargs)\r\n  File \"/apps/RAPCLUST/0.1/bin/RapClust\", line 54, in processQuant\r\n    eqnet.buildNetFile(sampleDirs, netFile, cutoff)\r\n  File \"/apps/RAPCLUST/0.1/lib/python2.7/site-packages/rapclust/eqnet.py\", line 100, in buildNetFile\r\n    if (diagCounts[i] > cutoff):\r\nIndexError: index 1423084 is out of bounds for axis 0 with size 1423084\r\nDo you know why is this happening? How can I fix this error?\r\nThanks a lot,\r\nJèssica"},"comment":{"url":"https://api.github.com/repos/COMBINE-lab/RapClust/issues/comments/243257340","html_url":"https://github.com/COMBINE-lab/RapClust/issues/7#issuecomment-243257340","issue_url":"https://api.github.com/repos/COMBINE-lab/RapClust/issues/7","id":243257340,"user":{"login":"k3yavi","id":8772521,"avatar_url":"https://avatars.githubusercontent.com/u/8772521?v=3","gravatar_id":"","url":"https://api.github.com/users/k3yavi","html_url":"https://github.com/k3yavi","followers_url":"https://api.github.com/users/k3yavi/followers","following_url":"https://api.github.com/users/k3yavi/following{/other_user}","gists_url":"https://api.github.com/users/k3yavi/gists{/gist_id}","starred_url":"https://api.github.com/users/k3yavi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/k3yavi/subscriptions","organizations_url":"https://api.github.com/users/k3yavi/orgs","repos_url":"https://api.github.com/users/k3yavi/repos","events_url":"https://api.github.com/users/k3yavi/events{/privacy}","received_events_url":"https://api.github.com/users/k3yavi/received_events","type":"User","site_admin":false},"created_at":"2016-08-29T21:09:53Z","updated_at":"2016-08-29T21:09:53Z","body":"Glad to hear."}}
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