{"action":"created","issue":{"url":"https://api.github.com/repos/BoevaLab/FREEC/issues/4","repository_url":"https://api.github.com/repos/BoevaLab/FREEC","labels_url":"https://api.github.com/repos/BoevaLab/FREEC/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/BoevaLab/FREEC/issues/4/comments","events_url":"https://api.github.com/repos/BoevaLab/FREEC/issues/4/events","html_url":"https://github.com/BoevaLab/FREEC/issues/4","id":183074696,"number":4,"title":"recommended value for breakPointThreshold","user":{"login":"hongenxu","id":17252578,"avatar_url":"https://avatars.githubusercontent.com/u/17252578?v=3","gravatar_id":"","url":"https://api.github.com/users/hongenxu","html_url":"https://github.com/hongenxu","followers_url":"https://api.github.com/users/hongenxu/followers","following_url":"https://api.github.com/users/hongenxu/following{/other_user}","gists_url":"https://api.github.com/users/hongenxu/gists{/gist_id}","starred_url":"https://api.github.com/users/hongenxu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hongenxu/subscriptions","organizations_url":"https://api.github.com/users/hongenxu/orgs","repos_url":"https://api.github.com/users/hongenxu/repos","events_url":"https://api.github.com/users/hongenxu/events{/privacy}","received_events_url":"https://api.github.com/users/hongenxu/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-10-14T15:07:15Z","updated_at":"2016-10-26T09:17:38Z","closed_at":"2016-10-26T09:17:38Z","body":"Hi, \r\n\r\nin the version of FREEC-9.6, there is a file config_WGS.txt. In it, we can see following text\r\n\"\r\n##This should be a positive value. The closer it is to Zero, the more breakpoints will be called. Its recommended value is between 0.01 and 0.08.\r\nbreakPointThreshold = .8\"\r\n\r\nI also checked http://boevalab.com/FREEC/tutorial.html#CONFIG, the default value for breakPointThreshold  is 0.8. \r\n\r\nAre 0.01 and 0.08 should be 0.1 and 0.8? \r\n\r\nBest regards,\r\nHongen\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/BoevaLab/FREEC/issues/comments/256293209","html_url":"https://github.com/BoevaLab/FREEC/issues/4#issuecomment-256293209","issue_url":"https://api.github.com/repos/BoevaLab/FREEC/issues/4","id":256293209,"user":{"login":"valeu","id":10144507,"avatar_url":"https://avatars.githubusercontent.com/u/10144507?v=3","gravatar_id":"","url":"https://api.github.com/users/valeu","html_url":"https://github.com/valeu","followers_url":"https://api.github.com/users/valeu/followers","following_url":"https://api.github.com/users/valeu/following{/other_user}","gists_url":"https://api.github.com/users/valeu/gists{/gist_id}","starred_url":"https://api.github.com/users/valeu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/valeu/subscriptions","organizations_url":"https://api.github.com/users/valeu/orgs","repos_url":"https://api.github.com/users/valeu/repos","events_url":"https://api.github.com/users/valeu/events{/privacy}","received_events_url":"https://api.github.com/users/valeu/received_events","type":"User","site_admin":false},"created_at":"2016-10-26T09:17:38Z","updated_at":"2016-10-26T09:17:38Z","body":"You are right, 0.01 will give too many breakpoints. I should have written that OK values lay between 0.6 and 1.2."}}
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