{"action":"opened","issue":{"url":"https://api.github.com/repos/HiSPARC/publicdb/issues/150","repository_url":"https://api.github.com/repos/HiSPARC/publicdb","labels_url":"https://api.github.com/repos/HiSPARC/publicdb/issues/150/labels{/name}","comments_url":"https://api.github.com/repos/HiSPARC/publicdb/issues/150/comments","events_url":"https://api.github.com/repos/HiSPARC/publicdb/issues/150/events","html_url":"https://github.com/HiSPARC/publicdb/issues/150","id":176554863,"number":150,"title":"Nightly update 12-9 failed: HDF5 error ","user":{"login":"tomkooij","id":6316468,"avatar_url":"https://avatars.githubusercontent.com/u/6316468?v=3","gravatar_id":"","url":"https://api.github.com/users/tomkooij","html_url":"https://github.com/tomkooij","followers_url":"https://api.github.com/users/tomkooij/followers","following_url":"https://api.github.com/users/tomkooij/following{/other_user}","gists_url":"https://api.github.com/users/tomkooij/gists{/gist_id}","starred_url":"https://api.github.com/users/tomkooij/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tomkooij/subscriptions","organizations_url":"https://api.github.com/users/tomkooij/orgs","repos_url":"https://api.github.com/users/tomkooij/repos","events_url":"https://api.github.com/users/tomkooij/events{/privacy}","received_events_url":"https://api.github.com/users/tomkooij/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-09-13T05:46:18Z","updated_at":"2016-09-13T05:46:18Z","closed_at":null,"body":"hisparc-update failed:\r\n\r\n`/var/log/hisparc-update.log:`\r\n```\r\n2016-09-13 04:05:49,420 - INFO - [11674] - Processing events and storing ESD for Summary: 1005 - 12 Sep 2016\r\n2016-09-13 04:05:54,806 - INFO - [11675] - Processing events and storing ESD for Summary: 1003 - 12 Sep 2016\r\n2016-09-13 04:05:54,947 - INFO - [11675] - Processing events and storing ESD for Summary: 1001 - 12 Sep 2016\r\n2016-09-13 04:05:54,947 - ERROR - [11603] - Exception occured.\r\nTraceback (most recent call last):\r\n  File \"/srv/publicdb/www/scripts/hisparc-update.py\", line 44, in <module>\r\n    run()\r\n  File \"/srv/publicdb/www/scripts/hisparc-update.py\", line 27, in run\r\n    completed = hg.jobs.update_all_histograms()\r\n  File \"/srv/publicdb/www/scripts/../django_publicdb/histograms/jobs.py\", line 177, in update_all_histograms\r\n    perform_update_tasks()\r\n  File \"/srv/publicdb/www/scripts/../django_publicdb/histograms/jobs.py\", line 198, in perform_update_tasks\r\n    update_esd()\r\n  File \"/srv/publicdb/www/scripts/../django_publicdb/histograms/jobs.py\", line 235, in update_esd\r\n    for summary, tmp_locations in results:\r\n  File \"/srv/publicdb/publicdb_env/lib/python2.7/multiprocessing/pool.py\", line 668, in next\r\n    raise value\r\nHDF5ExtError: HDF5 error back trace\r\n\r\n  File \"H5F.c\", line 604, in H5Fopen\r\n    unable to open file\r\n  File \"H5Fint.c\", line 1085, in H5F_open\r\n    unable to read superblock\r\n  File \"H5Fsuper.c\", line 294, in H5F_super_read\r\n    unable to load superblock\r\n  File \"H5AC.c\", line 1320, in H5AC_protect\r\n    H5C_protect() failed.\r\n  File \"H5C.c\", line 3574, in H5C_protect\r\n    can't load entry\r\n  File \"H5C.c\", line 7954, in H5C_load_entry\r\n    unable to load entry\r\n  File \"H5Fsuper_cache.c\", line 476, in H5F_sblock_load\r\n    truncated file: eof = 2965724256, sblock->base_addr = 0, stored_eoa = 2965740640\r\n\r\nEnd of HDF5 error back trace\r\n```\r\n\r\nI retried, with same failure. \r\n\r\nI turned off multiprocessing and restarted again. (`uppub && uphis`)"}}
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