{"action":"created","issue":{"url":"https://api.github.com/repos/sartorlab/methylSig/issues/16","repository_url":"https://api.github.com/repos/sartorlab/methylSig","labels_url":"https://api.github.com/repos/sartorlab/methylSig/issues/16/labels{/name}","comments_url":"https://api.github.com/repos/sartorlab/methylSig/issues/16/comments","events_url":"https://api.github.com/repos/sartorlab/methylSig/issues/16/events","html_url":"https://github.com/sartorlab/methylSig/issues/16","id":162585805,"number":16,"title":"Error with methylSigTile","user":{"login":"svarsen","id":15166531,"avatar_url":"https://avatars.githubusercontent.com/u/15166531?v=3","gravatar_id":"","url":"https://api.github.com/users/svarsen","html_url":"https://github.com/svarsen","followers_url":"https://api.github.com/users/svarsen/followers","following_url":"https://api.github.com/users/svarsen/following{/other_user}","gists_url":"https://api.github.com/users/svarsen/gists{/gist_id}","starred_url":"https://api.github.com/users/svarsen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/svarsen/subscriptions","organizations_url":"https://api.github.com/users/svarsen/orgs","repos_url":"https://api.github.com/users/svarsen/repos","events_url":"https://api.github.com/users/svarsen/events{/privacy}","received_events_url":"https://api.github.com/users/svarsen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-06-28T01:53:21Z","updated_at":"2016-06-28T15:00:58Z","closed_at":null,"body":"Hey,\r\nI am using MethylSig version 0.4.4\r\nand R version 3.2.2 (2015-08-14) : \"Fire Safety\"\r\n\r\nI have been attempting to get the methylSigTile function to take a preset list of windows as an input and have received the error below:\r\n\r\n> kit_tiler=methylSigTile(meth,tiles=test2)\r\nTiling by regions\r\nError in colSums(meth@data.numCs[whichVlist[whichSTART[i]:whichEND[i]],  : \r\n  'x' must be an array of at least two dimensions\r\nthe meth variable does not seem to cause any problems when I run kit_tiler=methylSigTile(meth,win.size=200) instead so I do think it is the problem.\r\n\r\nI have included a sample of the test2 variable below:\r\nchr\tstart\tend\r\nscaffold1\t1\t200\r\nscaffold1\t201\t400\r\nscaffold1\t401\t600\r\nscaffold1\t601\t800\r\nscaffold1\t801\t1000\r\nscaffold1\t1001\t1200\r\nscaffold1\t1201\t1400\r\nscaffold1\t1401\t1600\r\n(Tab-delimited). I load this variable into R as a data.frame and pass it to methylSigTile.\r\nDo you have any suggestions?\r\nThanks,\r\nSam\r\n"},"comment":{"url":"https://api.github.com/repos/sartorlab/methylSig/issues/comments/229076681","html_url":"https://github.com/sartorlab/methylSig/issues/16#issuecomment-229076681","issue_url":"https://api.github.com/repos/sartorlab/methylSig/issues/16","id":229076681,"user":{"login":"rcavalcante","id":626455,"avatar_url":"https://avatars.githubusercontent.com/u/626455?v=3","gravatar_id":"","url":"https://api.github.com/users/rcavalcante","html_url":"https://github.com/rcavalcante","followers_url":"https://api.github.com/users/rcavalcante/followers","following_url":"https://api.github.com/users/rcavalcante/following{/other_user}","gists_url":"https://api.github.com/users/rcavalcante/gists{/gist_id}","starred_url":"https://api.github.com/users/rcavalcante/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rcavalcante/subscriptions","organizations_url":"https://api.github.com/users/rcavalcante/orgs","repos_url":"https://api.github.com/users/rcavalcante/repos","events_url":"https://api.github.com/users/rcavalcante/events{/privacy}","received_events_url":"https://api.github.com/users/rcavalcante/received_events","type":"User","site_admin":false},"created_at":"2016-06-28T15:00:58Z","updated_at":"2016-06-28T15:00:58Z","body":"Hi Sam,\r\n\r\nThanks for using methylSig. I wonder if you can attach an `.RData` to this thread with the `meth` object loaded so I can play around with it a little more?\r\n\r\nThanks,\r\nRaymond"}}
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