{"action":"created","issue":{"url":"https://api.github.com/repos/firemodels/fds-smv/issues/4093","repository_url":"https://api.github.com/repos/firemodels/fds-smv","labels_url":"https://api.github.com/repos/firemodels/fds-smv/issues/4093/labels{/name}","comments_url":"https://api.github.com/repos/firemodels/fds-smv/issues/4093/comments","events_url":"https://api.github.com/repos/firemodels/fds-smv/issues/4093/events","html_url":"https://github.com/firemodels/fds-smv/issues/4093","id":165711257,"number":4093,"title":"Issues Installing fds6.x with mpi on linux","user":{"login":"leonyuhanov","id":7405342,"avatar_url":"https://avatars.githubusercontent.com/u/7405342?v=3","gravatar_id":"","url":"https://api.github.com/users/leonyuhanov","html_url":"https://github.com/leonyuhanov","followers_url":"https://api.github.com/users/leonyuhanov/followers","following_url":"https://api.github.com/users/leonyuhanov/following{/other_user}","gists_url":"https://api.github.com/users/leonyuhanov/gists{/gist_id}","starred_url":"https://api.github.com/users/leonyuhanov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/leonyuhanov/subscriptions","organizations_url":"https://api.github.com/users/leonyuhanov/orgs","repos_url":"https://api.github.com/users/leonyuhanov/repos","events_url":"https://api.github.com/users/leonyuhanov/events{/privacy}","received_events_url":"https://api.github.com/users/leonyuhanov/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"mcgratta","id":11333911,"avatar_url":"https://avatars.githubusercontent.com/u/11333911?v=3","gravatar_id":"","url":"https://api.github.com/users/mcgratta","html_url":"https://github.com/mcgratta","followers_url":"https://api.github.com/users/mcgratta/followers","following_url":"https://api.github.com/users/mcgratta/following{/other_user}","gists_url":"https://api.github.com/users/mcgratta/gists{/gist_id}","starred_url":"https://api.github.com/users/mcgratta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mcgratta/subscriptions","organizations_url":"https://api.github.com/users/mcgratta/orgs","repos_url":"https://api.github.com/users/mcgratta/repos","events_url":"https://api.github.com/users/mcgratta/events{/privacy}","received_events_url":"https://api.github.com/users/mcgratta/received_events","type":"User","site_admin":false},"assignees":[{"login":"mcgratta","id":11333911,"avatar_url":"https://avatars.githubusercontent.com/u/11333911?v=3","gravatar_id":"","url":"https://api.github.com/users/mcgratta","html_url":"https://github.com/mcgratta","followers_url":"https://api.github.com/users/mcgratta/followers","following_url":"https://api.github.com/users/mcgratta/following{/other_user}","gists_url":"https://api.github.com/users/mcgratta/gists{/gist_id}","starred_url":"https://api.github.com/users/mcgratta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mcgratta/subscriptions","organizations_url":"https://api.github.com/users/mcgratta/orgs","repos_url":"https://api.github.com/users/mcgratta/repos","events_url":"https://api.github.com/users/mcgratta/events{/privacy}","received_events_url":"https://api.github.com/users/mcgratta/received_events","type":"User","site_admin":false},{"login":"gforney","id":12403014,"avatar_url":"https://avatars.githubusercontent.com/u/12403014?v=3","gravatar_id":"","url":"https://api.github.com/users/gforney","html_url":"https://github.com/gforney","followers_url":"https://api.github.com/users/gforney/followers","following_url":"https://api.github.com/users/gforney/following{/other_user}","gists_url":"https://api.github.com/users/gforney/gists{/gist_id}","starred_url":"https://api.github.com/users/gforney/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gforney/subscriptions","organizations_url":"https://api.github.com/users/gforney/orgs","repos_url":"https://api.github.com/users/gforney/repos","events_url":"https://api.github.com/users/gforney/events{/privacy}","received_events_url":"https://api.github.com/users/gforney/received_events","type":"User","site_admin":false}],"milestone":null,"comments":20,"created_at":"2016-07-15T04:54:03Z","updated_at":"2016-07-27T01:45:32Z","closed_at":null,"body":"I am setting up a small cluster but can not get even 1 node to run:\r\nSet up:\r\n- Intel i7 4 core, 16gb ram with Ubuntu Server\r\n- Manually compiled mpi 1.8.4 from source(also tried the latest v2.0 and had the exact same issue)\r\n```\r\nadministrator@FDS6TN01:~$ mpirun --V\r\nmpirun (Open MPI) 1.8.4\r\nReport bugs to http://www.open-mpi.org/community/help/\r\n```\r\n-Manually compiled fds 6.5.1, 6.5.0 and 6.4.0 from source(note that I can NOT get any version to RUN properly with mpi this exmaple uses 6.5.1) \r\n\r\n```\r\nadministrator@FDS6TN01:~$ fds651/fds_mpi_gnu_linux_64\r\n\r\n Fire Dynamics Simulator\r\n\r\n Current Date     : July 15, 2016  14:49:39\r\n Version          : FDS 6.5.1\r\n Revision         : Git-r16-57-ge712384-dirty\r\n Revision Date    : Tue Jul 12 23:10:58 2016 -0400\r\n Compilation Date : Jul 15, 2016  14:05:27\r\n\r\n MPI Enabled; Number of MPI Processes:          1\r\n OpenMP Disabled\r\n\r\n MPI version: 3.0\r\n MPI library version: Open MPI v1.8.4, package: Open MPI administrator@FDS6TN01 Distribution, ident: 1.8.4, repo rev: v1.8.3-330-g0344f04, Dec 19, 2014\r\n\r\n Consult FDS Users Guide Chapter, Running FDS, for further instructions.\r\n\r\n Hit Enter to Escape...\r\n\r\nadministrator@FDS6TN01:~$\r\n\r\n```\r\n\r\nAny FDS sim I ran does this(im using `https://github.com/saschagottfried/fds-pyrosim-examples` as an example FDS job) :\r\n\r\n```\r\nadministrator@FDS6TN01:~/testSim$ mpiexec -np 4 ~/fds651/fds_mpi_gnu_linux_64 atrium_with_fans.fds\r\n Mesh      1 is assigned to MPI Process      0\r\n Mesh      2 is assigned to MPI Process      1\r\n Mesh      3 is assigned to MPI Process      2\r\n Mesh      4 is assigned to MPI Process      3\r\n\r\nProgram received signal SIGSEGV: Segmentation fault - invalid memory reference.\r\n\r\nBacktrace for this error:\r\n\r\nProgram received signal SIGSEGV: Segmentation fault - invalid memory reference.\r\n\r\nBacktrace for this error:\r\n\r\nProgram received signal SIGSEGV: Segmentation fault - invalid memory reference.\r\n\r\nBacktrace for this error:\r\n#0  0x7F90C6450E08\r\n#1  0x7F90C644FF90\r\n#2  0x7F90C5B8249F\r\n#3  0x7F90C5CBB854\r\n#4  0x7F90C65312D8\r\n#5  0x6DFDBD in __read_input_MOD_read_data\r\n#0  0x7FC2A0F7EE08\r\n#1  0x7FC2A0F7DF90\r\n#2  0x7FC2A06B049F\r\n#3  0x7FC2A07E9854\r\n#4  0x7FC2A105F2D8\r\n#5  0x6DFDBD in __read_input_MOD_read_data\r\n#6  0x792680 in MAIN__ at main.f90:?\r\n#6  0x792680 in MAIN__ at main.f90:?\r\n#0  0x7FEA15888E08\r\n\r\nProgram received signal SIGSEGV: Segmentation fault - invalid memory reference.\r\n\r\nBacktrace for this error:\r\n#1  0x7FEA15887F90\r\n#2  0x7FEA14FBA49F\r\n#3  0x7FEA150F3854\r\n#4  0x7FEA159692D8\r\n#5  0x6DFDBD in __read_input_MOD_read_data\r\n#6  0x792680 in MAIN__ at main.f90:?\r\n#0  0x7F182CCF1E08\r\n#1  0x7F182CCF0F90\r\n#2  0x7F182C42349F\r\n#3  0x7F182C55C854\r\n#4  0x7F182CDD22D8\r\n#5  0x6DFDBD in __read_input_MOD_read_data\r\n#6  0x792680 in MAIN__ at main.f90:?\r\n--------------------------------------------------------------------------\r\nmpiexec noticed that process rank 0 with PID 10844 on node FDS6TN01 exited on signal 11 (Segmentation fault).\r\n--------------------------------------------------------------------------\r\n\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/firemodels/fds-smv/issues/comments/235457854","html_url":"https://github.com/firemodels/fds-smv/issues/4093#issuecomment-235457854","issue_url":"https://api.github.com/repos/firemodels/fds-smv/issues/4093","id":235457854,"user":{"login":"gforney","id":12403014,"avatar_url":"https://avatars.githubusercontent.com/u/12403014?v=3","gravatar_id":"","url":"https://api.github.com/users/gforney","html_url":"https://github.com/gforney","followers_url":"https://api.github.com/users/gforney/followers","following_url":"https://api.github.com/users/gforney/following{/other_user}","gists_url":"https://api.github.com/users/gforney/gists{/gist_id}","starred_url":"https://api.github.com/users/gforney/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gforney/subscriptions","organizations_url":"https://api.github.com/users/gforney/orgs","repos_url":"https://api.github.com/users/gforney/repos","events_url":"https://api.github.com/users/gforney/events{/privacy}","received_events_url":"https://api.github.com/users/gforney/received_events","type":"User","site_admin":false},"created_at":"2016-07-27T01:45:31Z","updated_at":"2016-07-27T01:45:31Z","body":"Guess I'm confused. That is what I detailed in an earlier comment in this\nissue - using gfortran to build both openmpi and fds from source.  Are you\nsaying you followed these steps but it didn't work for you?\n\nOn Jul 26, 2016 8:16 PM, \"Leon\" <notifications@github.com> wrote:\n\n> @gforney <https://github.com/gforney> I had already successfully made a\n> working system using Ubuntu v16 using similar steps to yours. However this\n> particular issue is regarding compiling FDS from source... I don't need to\n> do this anymore an dim happy to close this ticket, but its still an issue\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/firemodels/fds-smv/issues/4093#issuecomment-235445034>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AL1BRuDcNCbfQYSlO9Z9UKi-wcGUODyNks5qZqNBgaJpZM4JNE28>\n> .\n>\n"}}
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