{"action":"closed","issue":{"url":"https://api.github.com/repos/martijnvermaattest/test/issues/27","repository_url":"https://api.github.com/repos/martijnvermaattest/test","labels_url":"https://api.github.com/repos/martijnvermaattest/test/issues/27/labels{/name}","comments_url":"https://api.github.com/repos/martijnvermaattest/test/issues/27/comments","events_url":"https://api.github.com/repos/martijnvermaattest/test/issues/27/events","html_url":"https://github.com/martijnvermaattest/test/issues/27","id":139586772,"number":27,"title":"Missing NCBI DTD in Bio.Entrez","user":{"login":"martijnvermaattest","id":17727768,"avatar_url":"https://avatars.githubusercontent.com/u/17727768?v=3","gravatar_id":"","url":"https://api.github.com/users/martijnvermaattest","html_url":"https://github.com/martijnvermaattest","followers_url":"https://api.github.com/users/martijnvermaattest/followers","following_url":"https://api.github.com/users/martijnvermaattest/following{/other_user}","gists_url":"https://api.github.com/users/martijnvermaattest/gists{/gist_id}","starred_url":"https://api.github.com/users/martijnvermaattest/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/martijnvermaattest/subscriptions","organizations_url":"https://api.github.com/users/martijnvermaattest/orgs","repos_url":"https://api.github.com/users/martijnvermaattest/repos","events_url":"https://api.github.com/users/martijnvermaattest/events{/privacy}","received_events_url":"https://api.github.com/users/martijnvermaattest/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"martijnvermaattest","id":17727768,"avatar_url":"https://avatars.githubusercontent.com/u/17727768?v=3","gravatar_id":"","url":"https://api.github.com/users/martijnvermaattest","html_url":"https://github.com/martijnvermaattest","followers_url":"https://api.github.com/users/martijnvermaattest/followers","following_url":"https://api.github.com/users/martijnvermaattest/following{/other_user}","gists_url":"https://api.github.com/users/martijnvermaattest/gists{/gist_id}","starred_url":"https://api.github.com/users/martijnvermaattest/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/martijnvermaattest/subscriptions","organizations_url":"https://api.github.com/users/martijnvermaattest/orgs","repos_url":"https://api.github.com/users/martijnvermaattest/repos","events_url":"https://api.github.com/users/martijnvermaattest/events{/privacy}","received_events_url":"https://api.github.com/users/martijnvermaattest/received_events","type":"User","site_admin":false},"milestone":null,"comments":6,"created_at":"2016-03-09T14:10:57Z","updated_at":"2016-03-09T14:11:27Z","closed_at":"2016-03-09T14:11:27Z","body":"**Original ticket**: https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/27\n**Original date**: 2011/02/09\n**Original reporter**: *m DOT vermaat DOT hg AND lumc DOT nl*\n\nReported by Ivar. With UD_12972395149, getTranscriptsAndInfo fails on retriever.loadrecord, because eLink_101123.dtd is not present. I cannot find this DTD anywhere.\n\nIvar also tried our local Mutalyzer installations.\n\n\n\nUnable to load DTD file eLink_101123.dtd\n\nBio.Entrez uses NCBI's DTD files to parse XML files returned by NCBI Entrez.\nThough most of NCBI's DTD files are included in the Biopython distribution,\nsometimes you may find that a particular DTD file is missing. In such a\ncase, you can download the DTD file from NCBI and install it manually.\n\nUsually, you can find missing DTD files at either\n    http://www.ncbi.nlm.nih.gov/dtd/\nor\n    http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/\n\nIf you cannot find eLink_101123.dtd there, you may also try to search\nfor it with a search engine such as Google.\n\nPlease save eLink_101123.dtd in the directory\n/usr/lib/pymodules/python2.6/Bio/Entrez/DTDs\nin order for Bio.Entrez to find it.\n\nAlternatively, you can save eLink_101123.dtd in the directory\nBio/Entrez/DTDs in the Biopython distribution, and reinstall Biopython."}}