{"action":"created","issue":{"url":"https://api.github.com/repos/samtools/htslib/issues/409","repository_url":"https://api.github.com/repos/samtools/htslib","labels_url":"https://api.github.com/repos/samtools/htslib/issues/409/labels{/name}","comments_url":"https://api.github.com/repos/samtools/htslib/issues/409/comments","events_url":"https://api.github.com/repos/samtools/htslib/issues/409/events","html_url":"https://github.com/samtools/htslib/pull/409","id":175963765,"number":409,"title":"Handle VCF lines with misssing FORMAT=.","user":{"login":"pd3","id":524074,"avatar_url":"https://avatars.githubusercontent.com/u/524074?v=3","gravatar_id":"","url":"https://api.github.com/users/pd3","html_url":"https://github.com/pd3","followers_url":"https://api.github.com/users/pd3/followers","following_url":"https://api.github.com/users/pd3/following{/other_user}","gists_url":"https://api.github.com/users/pd3/gists{/gist_id}","starred_url":"https://api.github.com/users/pd3/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pd3/subscriptions","organizations_url":"https://api.github.com/users/pd3/orgs","repos_url":"https://api.github.com/users/pd3/repos","events_url":"https://api.github.com/users/pd3/events{/privacy}","received_events_url":"https://api.github.com/users/pd3/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2016-09-09T09:14:47Z","updated_at":"2016-09-09T15:37:17Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/samtools/htslib/pulls/409","html_url":"https://github.com/samtools/htslib/pull/409","diff_url":"https://github.com/samtools/htslib/pull/409.diff","patch_url":"https://github.com/samtools/htslib/pull/409.patch"},"body":"For example, this is a valid VCF line\r\n\r\n1       300 .   C   A   .    PASS   .    .       .       ."},"comment":{"url":"https://api.github.com/repos/samtools/htslib/issues/comments/245950134","html_url":"https://github.com/samtools/htslib/pull/409#issuecomment-245950134","issue_url":"https://api.github.com/repos/samtools/htslib/issues/409","id":245950134,"user":{"login":"daviesrob","id":3234562,"avatar_url":"https://avatars.githubusercontent.com/u/3234562?v=3","gravatar_id":"","url":"https://api.github.com/users/daviesrob","html_url":"https://github.com/daviesrob","followers_url":"https://api.github.com/users/daviesrob/followers","following_url":"https://api.github.com/users/daviesrob/following{/other_user}","gists_url":"https://api.github.com/users/daviesrob/gists{/gist_id}","starred_url":"https://api.github.com/users/daviesrob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/daviesrob/subscriptions","organizations_url":"https://api.github.com/users/daviesrob/orgs","repos_url":"https://api.github.com/users/daviesrob/repos","events_url":"https://api.github.com/users/daviesrob/events{/privacy}","received_events_url":"https://api.github.com/users/daviesrob/received_events","type":"User","site_admin":false},"created_at":"2016-09-09T15:37:17Z","updated_at":"2016-09-09T15:37:17Z","body":"If you did that, entries like `.:GT` would still be a problem.  It should also return -1 for the error condition.\r\n\r\nI think strictly a `.` on its own should be allowed, but a `.` with anything else should be illegal.\r\n\r\nI see that `vcf_format` already writes this format for records where `n_fmt == 0` and `n_samples > 0`.  So we do need something like this to allow htslib to read its own output..."}}
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