{"action":"created","issue":{"url":"https://api.github.com/repos/clulab/reach/issues/48","labels_url":"https://api.github.com/repos/clulab/reach/issues/48/labels{/name}","comments_url":"https://api.github.com/repos/clulab/reach/issues/48/comments","events_url":"https://api.github.com/repos/clulab/reach/issues/48/events","html_url":"https://github.com/clulab/reach/issues/48","id":129270930,"number":48,"title":"Problem with activation direction","user":{"login":"myedibleenso","id":1137472,"avatar_url":"https://avatars.githubusercontent.com/u/1137472?v=3","gravatar_id":"","url":"https://api.github.com/users/myedibleenso","html_url":"https://github.com/myedibleenso","followers_url":"https://api.github.com/users/myedibleenso/followers","following_url":"https://api.github.com/users/myedibleenso/following{/other_user}","gists_url":"https://api.github.com/users/myedibleenso/gists{/gist_id}","starred_url":"https://api.github.com/users/myedibleenso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/myedibleenso/subscriptions","organizations_url":"https://api.github.com/users/myedibleenso/orgs","repos_url":"https://api.github.com/users/myedibleenso/repos","events_url":"https://api.github.com/users/myedibleenso/events{/privacy}","received_events_url":"https://api.github.com/users/myedibleenso/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/clulab/reach/labels/actions","name":"actions","color":"fbca04"},{"url":"https://api.github.com/repos/clulab/reach/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":{"login":"MihaiSurdeanu","id":1179342,"avatar_url":"https://avatars.githubusercontent.com/u/1179342?v=3","gravatar_id":"","url":"https://api.github.com/users/MihaiSurdeanu","html_url":"https://github.com/MihaiSurdeanu","followers_url":"https://api.github.com/users/MihaiSurdeanu/followers","following_url":"https://api.github.com/users/MihaiSurdeanu/following{/other_user}","gists_url":"https://api.github.com/users/MihaiSurdeanu/gists{/gist_id}","starred_url":"https://api.github.com/users/MihaiSurdeanu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MihaiSurdeanu/subscriptions","organizations_url":"https://api.github.com/users/MihaiSurdeanu/orgs","repos_url":"https://api.github.com/users/MihaiSurdeanu/repos","events_url":"https://api.github.com/users/MihaiSurdeanu/events{/privacy}","received_events_url":"https://api.github.com/users/MihaiSurdeanu/received_events","type":"User","site_admin":false},"milestone":null,"comments":0,"created_at":"2016-01-27T21:15:32Z","updated_at":"2016-02-01T03:04:09Z","closed_at":"2016-02-01T03:04:09Z","body":"**Bug type**: `Rules`\r\n\r\n**Description**:  incorrect direction for activation (around \"inhibitors including\"); why is \"restore\" a negative activation?\r\n\r\n```scala\r\n\r\nimport edu.arizona.sista.reach.nxml.FriesEntry\r\nimport edu.arizona.sista.reach.ReachSystem\r\n\r\n// Initialize the REACH system\r\nval rs = new ReachSystem\r\n\r\ndef mentionsFromText(text:String):Seq[Mention]= {\r\n  val entry = FriesEntry(\"test\", \"1\", \"example\", \"example\", isTitle = false, text)\r\n  rs.extractFrom(entry)\r\n}\r\n\r\nval sentenceText = \"HDAC inhibitors including trichostatin A (TSA) completely restored RECK\"\r\n\r\nval mentionText = \"HDAC inhibitors including trichostatin A (TSA) completely restored RECK expression suppressed by hypoxia in the H-Ras MCF10A cell line (human breast cancer) and the HT1080 cell lines (human fibrosarcoma).\"\r\n\r\nval mentions = mentionsFromText(sentenceText)\r\n```"},"comment":{"url":"https://api.github.com/repos/clulab/reach/issues/comments/177730596","html_url":"https://github.com/clulab/reach/issues/48#issuecomment-177730596","issue_url":"https://api.github.com/repos/clulab/reach/issues/48","id":177730596,"user":{"login":"MihaiSurdeanu","id":1179342,"avatar_url":"https://avatars.githubusercontent.com/u/1179342?v=3","gravatar_id":"","url":"https://api.github.com/users/MihaiSurdeanu","html_url":"https://github.com/MihaiSurdeanu","followers_url":"https://api.github.com/users/MihaiSurdeanu/followers","following_url":"https://api.github.com/users/MihaiSurdeanu/following{/other_user}","gists_url":"https://api.github.com/users/MihaiSurdeanu/gists{/gist_id}","starred_url":"https://api.github.com/users/MihaiSurdeanu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MihaiSurdeanu/subscriptions","organizations_url":"https://api.github.com/users/MihaiSurdeanu/orgs","repos_url":"https://api.github.com/users/MihaiSurdeanu/repos","events_url":"https://api.github.com/users/MihaiSurdeanu/events{/privacy}","received_events_url":"https://api.github.com/users/MihaiSurdeanu/received_events","type":"User","site_admin":false},"created_at":"2016-02-01T03:04:09Z","updated_at":"2016-02-01T03:04:09Z","body":"Fixed.\r\n@myedibleenso: this is now a great example for assembly!\r\n"}}