{"action":"created","issue":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/1095","repository_url":"https://api.github.com/repos/GMOD/Apollo","labels_url":"https://api.github.com/repos/GMOD/Apollo/issues/1095/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/Apollo/issues/1095/comments","events_url":"https://api.github.com/repos/GMOD/Apollo/issues/1095/events","html_url":"https://github.com/GMOD/Apollo/issues/1095","id":158229591,"number":1095,"title":"'Change annotation type' menu and options need attention.","user":{"login":"monicacecilia","id":1714621,"avatar_url":"https://avatars.githubusercontent.com/u/1714621?v=3","gravatar_id":"","url":"https://api.github.com/users/monicacecilia","html_url":"https://github.com/monicacecilia","followers_url":"https://api.github.com/users/monicacecilia/followers","following_url":"https://api.github.com/users/monicacecilia/following{/other_user}","gists_url":"https://api.github.com/users/monicacecilia/gists{/gist_id}","starred_url":"https://api.github.com/users/monicacecilia/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/monicacecilia/subscriptions","organizations_url":"https://api.github.com/users/monicacecilia/orgs","repos_url":"https://api.github.com/users/monicacecilia/repos","events_url":"https://api.github.com/users/monicacecilia/events{/privacy}","received_events_url":"https://api.github.com/users/monicacecilia/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/GMOD/Apollo/labels/discussion","name":"discussion","color":"cc317c"},{"url":"https://api.github.com/repos/GMOD/Apollo/labels/enhancement","name":"enhancement","color":"84b6eb"},{"url":"https://api.github.com/repos/GMOD/Apollo/labels/Important","name":"Important","color":"eb6420"}],"state":"open","locked":false,"assignee":{"login":"deepakunni3","id":4530272,"avatar_url":"https://avatars.githubusercontent.com/u/4530272?v=3","gravatar_id":"","url":"https://api.github.com/users/deepakunni3","html_url":"https://github.com/deepakunni3","followers_url":"https://api.github.com/users/deepakunni3/followers","following_url":"https://api.github.com/users/deepakunni3/following{/other_user}","gists_url":"https://api.github.com/users/deepakunni3/gists{/gist_id}","starred_url":"https://api.github.com/users/deepakunni3/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/deepakunni3/subscriptions","organizations_url":"https://api.github.com/users/deepakunni3/orgs","repos_url":"https://api.github.com/users/deepakunni3/repos","events_url":"https://api.github.com/users/deepakunni3/events{/privacy}","received_events_url":"https://api.github.com/users/deepakunni3/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/GMOD/Apollo/milestones/23","html_url":"https://github.com/GMOD/Apollo/milestones/2.0.3","labels_url":"https://api.github.com/repos/GMOD/Apollo/milestones/23/labels","id":1299980,"number":23,"title":"2.0.3","description":"Bugfixes and Chado re-implementation.\r\n\r\n- Closed issued: https://github.com/GMOD/Apollo/issues?q=is%3Apr+milestone%3A2.0.3+is%3Aclosed\r\n- Closed pull requests: https://github.com/GMOD/Apollo/pulls?q=is%3Apr+milestone%3A2.0.3+is%3Aclosed","creator":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"open_issues":20,"closed_issues":135,"state":"open","created_at":"2015-09-10T19:58:08Z","updated_at":"2016-06-02T20:58:04Z","due_on":null,"closed_at":null},"comments":9,"created_at":"2016-06-02T20:15:37Z","updated_at":"2016-06-02T20:59:04Z","closed_at":null,"body":"Dear @deepakunni3 \r\n\r\nRegarding the end product of the [pull request to \"Change annotation type\"](https://github.com/GMOD/Apollo/pull/1002): \r\n\r\n- A genomic element of type 'gene' can be changed to anything else, including 'repeat_region' (RR) or 'transposable_element' (TE). \r\n![screen shot 2016-06-02 at 1 03 34 pm](https://cloud.githubusercontent.com/assets/1714621/15759318/17c7776c-28c3-11e6-9c54-c5a9b9421048.png)\r\n\r\n- But a genomic element of type 'repeat_region' or 'transposable_element' can only be changed to one of these two (RR or TE).  __Question:__ If a curator changes the feature type of a gene model to RR, the action cannot be reversed. Is this deliberate? What is the reason for this? Is it due to the lack of directionality? \r\n\r\n![screen shot 2016-06-02 at 1 03 42 pm](https://cloud.githubusercontent.com/assets/1714621/15759330/1cefda9a-28c3-11e6-9d7b-6c968b8a4461.png)\r\n\r\n\r\n__ToDo List__\r\n- [ ] Add message so that when curator tries to change the annotation type from a genomic element with directionality to one that does not require it, they are warned that the action is not reversible.\r\n- [ ] The menu options to \"Change annotation type\" only appear after _click_ over the words. Could we change this to react when user hovers over the words instead? The way the 'Create new annotation' menu (from _right click_ over evidence tracks) works? \r\n\r\n@nathandunn FYI.\r\n"},"comment":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/comments/223420495","html_url":"https://github.com/GMOD/Apollo/issues/1095#issuecomment-223420495","issue_url":"https://api.github.com/repos/GMOD/Apollo/issues/1095","id":223420495,"user":{"login":"monicacecilia","id":1714621,"avatar_url":"https://avatars.githubusercontent.com/u/1714621?v=3","gravatar_id":"","url":"https://api.github.com/users/monicacecilia","html_url":"https://github.com/monicacecilia","followers_url":"https://api.github.com/users/monicacecilia/followers","following_url":"https://api.github.com/users/monicacecilia/following{/other_user}","gists_url":"https://api.github.com/users/monicacecilia/gists{/gist_id}","starred_url":"https://api.github.com/users/monicacecilia/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/monicacecilia/subscriptions","organizations_url":"https://api.github.com/users/monicacecilia/orgs","repos_url":"https://api.github.com/users/monicacecilia/repos","events_url":"https://api.github.com/users/monicacecilia/events{/privacy}","received_events_url":"https://api.github.com/users/monicacecilia/received_events","type":"User","site_admin":false},"created_at":"2016-06-02T20:59:04Z","updated_at":"2016-06-02T20:59:04Z","body":"Incorrect. You thought we should not add a warning message because curators could grow tired of them. I said the action might be infrequent enough that it might not matter. \r\nI also said we should let curators know about this in ways different than user guide and mailing list. \r\nThe only alternative offered was a message box. \r\n"}}
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