{"action":"opened","issue":{"url":"https://api.github.com/repos/obophenotype/uberon/issues/1277","repository_url":"https://api.github.com/repos/obophenotype/uberon","labels_url":"https://api.github.com/repos/obophenotype/uberon/issues/1277/labels{/name}","comments_url":"https://api.github.com/repos/obophenotype/uberon/issues/1277/comments","events_url":"https://api.github.com/repos/obophenotype/uberon/issues/1277/events","html_url":"https://github.com/obophenotype/uberon/issues/1277","id":181730781,"number":1277,"title":"Last Batch of Potential Modeling Issues in Uberon","user":{"login":"ChrisOchs","id":15178398,"avatar_url":"https://avatars.githubusercontent.com/u/15178398?v=3","gravatar_id":"","url":"https://api.github.com/users/ChrisOchs","html_url":"https://github.com/ChrisOchs","followers_url":"https://api.github.com/users/ChrisOchs/followers","following_url":"https://api.github.com/users/ChrisOchs/following{/other_user}","gists_url":"https://api.github.com/users/ChrisOchs/gists{/gist_id}","starred_url":"https://api.github.com/users/ChrisOchs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ChrisOchs/subscriptions","organizations_url":"https://api.github.com/users/ChrisOchs/orgs","repos_url":"https://api.github.com/users/ChrisOchs/repos","events_url":"https://api.github.com/users/ChrisOchs/events{/privacy}","received_events_url":"https://api.github.com/users/ChrisOchs/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-10-07T17:56:29Z","updated_at":"2016-10-07T17:56:29Z","closed_at":null,"body":"This is the last set of modeling inconsistencies/potential errors our domain expert identified in a random sample of Uberon concepts.\r\n\r\n**anterodorsal nucleus of medial geniculate body**\r\n**Remove restriction:** The inherited value part_of dorsal plus ventral thalamus is misleading. This is related only to the dorsal thalamus.\r\n**Change restriction:** The value of part_of brain gray matter should be refined with gray matter of diencephalon\r\n\r\n**anterodorsal nucleus of medial geniculate body**\r\nIt is interesting as many of the different parts of the brain and CNS are not part_of each other. For example, why isn't the diencephalon which is_a regional part of brain but not is_a part of brain. Could have eliminated a lot of redundancy?\r\n\r\n**decussation of trochlear nerve**\r\n**Remove restriction:** The decussation is just anatomic fact that each trochlear nerve crosses from one side to the other, therefore I'm not sure that it is correct to apply extends_fibers_into\r\n\r\n**immature eye**\r\n**Remove restriction:** The target eye primordium is used both for develops_from and has_development_contribution_from which is redundant. One should be removed or one of the values should be replaced. For example develops_from ecto-epithelium?\r\n\r\n**lateral forebrain bundle:** \r\n**Change restriction:** Refine part_of with forebrain instead of CNS\r\n\r\n**postganglionic sympathetic fiber**\r\n**Change restriction:** Might be my misunderstanding but this is post galglionic so it extends_fibers_from and not extends_fibers_to. See definition.\r\n\r\n**presumptive paraxial mesoderm**\r\nTo be consistent with presumptive endoderm this should be part_of blastula and not mesoderm. Or vice versa.\r\n\r\n**subthalamic fasciculus**\r\nThe subthalamic fasciculus runs from the subthalamic nucleus to the globus pallidus so I'm not sure it is part_of ventral thalamus or is_a ventral thalamic fasciculus.\r\n\r\n**postcommissural fornix of brain**\r\n**Remove superclass:**  I think it is more correct to say that this is part_of the fornix than is_a and therefor the parent should be removed and added as a part_of relationship with the fornix of brain as the target.\r\n\r\n**piriform cortex layer 2a**\r\n**Add restriction:** add/refine part_of with rhinencephalon and/or telencephalon\r\n\r\n"}}
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