{"action":"created","comment":{"url":"https://api.github.com/repos/TestingResearchIllinois/NonDex/pulls/comments/90689540","pull_request_review_id":11209513,"id":90689540,"diff_hunk":"@@ -0,0 +1,142 @@\n+/*\n+The MIT License (MIT)\n+Copyright (c) 2015 Alex Gyori\n+Copyright (c) 2015 Owolabi Legunsen\n+Copyright (c) 2015 Darko Marinov\n+Copyright (c) 2015 August Shi\n+\n+\n+Permission is hereby granted, free of charge, to any person obtaining\n+a copy of this software and associated documentation files (the\n+\"Software\"), to deal in the Software without restriction, including\n+without limitation the rights to use, copy, modify, merge, publish,\n+distribute, sublicense, and/or sell copies of the Software, and to\n+permit persons to whom the Software is furnished to do so, subject to\n+the following conditions:\n+\n+The above copyright notice and this permission notice shall be\n+included in all copies or substantial portions of the Software.\n+\n+THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND,\n+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF\n+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND\n+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE\n+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION\n+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION\n+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.\n+*/\n+\n+package edu.illinois.nondex.common;\n+\n+import java.io.BufferedWriter;\n+import java.io.File;\n+import java.io.IOException;\n+import java.nio.charset.Charset;\n+import java.nio.charset.StandardCharsets;\n+import java.nio.file.Files;\n+import java.nio.file.Paths;\n+import java.util.ArrayList;\n+import java.util.List;\n+import java.util.Random;\n+import java.util.Stack;\n+\n+public class SystematicRandom extends Random {\n+    public static int STARTING_COUNT = 59;\n+    int replayIndex;\n+    int count;\n+    Stack<StackElement> choice;\n+    String logFileName;\n+    Charset utf8 = StandardCharsets.UTF_8;\n+    List<String> lines;\n+\n+    public SystematicRandom() {\n+        logFileName = System.getenv(\"logFileName\");\n+        if (logFileName != null) {\n+            File file = new File(this.logFileName);\n+            if (!file.exists()) {\n+                choice = new Stack<StackElement>();\n+                replayIndex = 0;\n+                count = 0;\n+            } else {\n+                choice = new Stack<StackElement>();\n+                try {\n+                    lines = Files.readAllLines(Paths.get(logFileName));\n+                } catch (IOException ioe) {\n+                    ioe.printStackTrace();","path":"nondex-common/src/main/java/edu/illinois/nondex/common/SystematicRandom.java","position":null,"original_position":65,"commit_id":"00dc9a8d6b589890e9e4e18b57343c1f26cc94fa","original_commit_id":"62866be8d08582ffd6a3ac07ed738fa61ff13063","user":{"login":"maronesy","id":5388165,"avatar_url":"https://avatars.githubusercontent.com/u/5388165?v=3","gravatar_id":"","url":"https://api.github.com/users/maronesy","html_url":"https://github.com/maronesy","followers_url":"https://api.github.com/users/maronesy/followers","following_url":"https://api.github.com/users/maronesy/following{/other_user}","gists_url":"https://api.github.com/users/maronesy/gists{/gist_id}","starred_url":"https://api.github.com/users/maronesy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maronesy/subscriptions","organizations_url":"https://api.github.com/users/maronesy/orgs","repos_url":"https://api.github.com/users/maronesy/repos","events_url":"https://api.github.com/users/maronesy/events{/privacy}","received_events_url":"https://api.github.com/users/maronesy/received_events","type":"User","site_admin":false},"body":"No, the code depends on systematic.log being read and than used.","created_at":"2016-12-02T18:01:12Z","updated_at":"2016-12-02T18:01:13Z","html_url":"https://github.com/TestingResearchIllinois/NonDex/pull/105#discussion_r90689540","pull_request_url":"https://api.github.com/repos/TestingResearchIllinois/NonDex/pulls/105","_links":{"self":{"href":"https://api.github.com/repos/TestingResearchIllinois/NonDex/pulls/comments/90689540"},"html":{"href":"https://github.com/TestingResearchIllinois/NonDex/pull/105#discussion_r90689540"},"pull_request":{"href":"https://api.github.com/repos/TestingResearchIllinois/NonDex/pulls/105"}}},"pull_request":{"url":"https://api.github.com/repos/TestingResearchIllinois/NonDex/pulls/105","id":95773416,"html_url":"https://github.com/TestingResearchIllinois/NonDex/pull/105","diff_url":"https://github.com/TestingResearchIllinois/NonDex/pull/105.diff","patch_url":"https://github.com/TestingResearchIllinois/NonDex/pull/105.patch","issue_url":"https://api.github.com/repos/TestingResearchIllinois/NonDex/issues/105","number":105,"state":"open","locked":false,"title":"Added Systematic Exploration feature","user":{"login":"maronesy","id":5388165,"avatar_url":"https://avatars.githubusercontent.com/u/5388165?v=3","gravatar_id":"","url":"https://api.github.com/users/maronesy","html_url":"https://github.com/maronesy","followers_url":"https://api.github.com/users/maronesy/followers","following_url":"https://api.github.com/users/maronesy/following{/other_user}","gists_url":"https://api.github.com/users/maronesy/gists{/gist_id}","starred_url":"https://api.github.com/users/maronesy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maronesy/subscriptions","organizations_url":"https://api.github.com/users/maronesy/orgs","repos_url":"https://api.github.com/users/maronesy/repos","events_url":"https://api.github.com/users/maronesy/events{/privacy}","received_events_url":"https://api.github.com/users/maronesy/received_events","type":"User","site_admin":false},"body":"Hi Alex,\r\n\r\nI have added the systematic exploration feature to NonDex.  I have added the following new classes:\r\n\r\nnondex-common/src/main/java/edu/illinois/nondex/common/SystematicRandom.java\r\nnondex-common/src/main/java/edu/illinois/nondex/common/StackElement.java\r\n\r\nAnd modfied the following classes:\r\n\r\nnondex-common/src/main/java/edu/illinois/nondex/common/Mode.java\r\nnondex-common/src/main/java/edu/illinois/nondex/common/NonDex.java\r\nnondex-common/src/main/java/edu/illinois/nondex/shuffling/ControlNondeterminism.java\r\nnondex-maven-plugin/src/main/java/edu/illinois/nondex/plugin/NonDexMojo.java\r\n\r\nI kindly ask that you merge my changes to NonDex.  Please let me know if there is anything that needs to be modified/corrected before accepting my PR.\r\n\r\nThanks,\r\nSouhayl","created_at":"2016-11-29T20:55:00Z","updated_at":"2016-12-02T18:01:13Z","closed_at":null,"merged_at":null,"merge_commit_sha":"7fc456dc6fa22e85a5506f715a807651f4d3f5d9","assignee":{"login":"alexgyori","id":1882366,"avatar_url":"https://avatars.githubusercontent.com/u/1882366?v=3","gravatar_id":"","url":"https://api.github.com/users/alexgyori","html_url":"https://github.com/alexgyori","followers_url":"https://api.github.com/users/alexgyori/followers","following_url":"https://api.github.com/users/alexgyori/following{/other_user}","gists_url":"https://api.github.com/users/alexgyori/gists{/gist_id}","starred_url":"https://api.github.com/users/alexgyori/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexgyori/subscriptions","organizations_url":"https://api.github.com/users/alexgyori/orgs","repos_url":"https://api.github.com/users/alexgyori/repos","events_url":"https://api.github.com/users/alexgyori/events{/privacy}","received_events_url":"https://api.github.com/users/alexgyori/received_events","type":"User","site_admin":false},"assignees":[{"login":"alexgyori","id":1882366,"avatar_url":"https://avatars.githubusercontent.com/u/1882366?v=3","gravatar_id":"","url":"https://api.github.com/users/alexgyori","html_url":"https://github.com/alexgyori","followers_url":"https://api.github.com/users/alexgyori/followers","following_url":"https://api.github.com/users/alexgyori/following{/other_user}","gists_url":"https://api.github.com/users/alexgyori/gists{/gist_id}","starred_url":"https://api.github.com/users/alexgyori/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexgyori/subscriptions","organizations_url":"https://api.github.com/users/alexgyori/orgs","repos_url":"https://api.github.com/users/alexgyori/repos","events_url":"https://api.github.com/users/alexgyori/events{/privacy}","received_events_url":"https://api.github.com/users/alexgyori/received_events","type":"User","site_admin":false},{"login":"august782","id":2348468,"avatar_url":"https://avatars.githubusercontent.com/u/2348468?v=3","gravatar_id":"","url":"https://api.github.com/users/august782","html_url":"https://github.com/august782","followers_url":"https://api.github.com/users/august782/followers","following_url":"https://api.github.com/users/august782/following{/other_user}","gists_url":"https://api.github.com/users/august782/gists{/gist_id}","starred_url":"https://api.github.com/users/august782/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/august782/subscriptions","organizations_url":"https://api.github.com/users/august782/orgs","repos_url":"https://api.github.com/users/august782/repos","events_url":"https://api.github.com/users/august782/events{/privacy}","received_events_url":"https://api.github.com/users/august782/received_events","type":"User","site_admin":false},{"login":"owolabileg","id":4887692,"avatar_url":"https://avatars.githubusercontent.com/u/4887692?v=3","gravatar_id":"","url":"https://api.github.com/users/owolabileg","html_url":"https://github.com/owolabileg","followers_url":"https://api.github.com/users/owolabileg/followers","following_url":"https://api.github.com/users/owolabileg/following{/other_user}","gists_url":"https://api.github.com/users/owolabileg/gists{/gist_id}","starred_url":"https://api.github.com/users/owolabileg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/owolabileg/subscriptions","organizations_url":"https://api.github.com/users/owolabileg/orgs","repos_url":"https://api.github.com/users/owolabileg/repos","events_url":"https://api.github.com/users/owolabileg/events{/privacy}","received_events_url":"https://api.github.com/users/owolabileg/received_events","type":"User","site_admin":false},{"login":"darko-marinov","id":5369502,"avatar_url":"https://avatars.githubusercontent.com/u/5369502?v=3","gravatar_id":"","url":"https://api.github.com/users/darko-marinov","html_url":"https://github.com/darko-marinov","followers_url":"https://api.github.com/users/darko-marinov/followers","following_url":"https://api.github.com/users/darko-marinov/following{/other_user}","gists_url":"https://api.github.com/users/darko-marinov/gists{/gist_id}","starred_url":"https://api.github.com/users/darko-marinov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/darko-marinov/subscriptions","organizations_url":"https://api.github.com/users/darko-marinov/orgs","repos_url":"https://api.github.com/users/darko-marinov/repos","events_url":"https://api.github.com/users/darko-marinov/events{/privacy}","received_events_url":"https://api.github.com/users/darko-marinov/received_events","type":"User","site_admin":false},{"login":"azy2","id":6697407,"avatar_url":"https://avatars.githubusercontent.com/u/6697407?v=3","gravatar_id":"","url":"https://api.github.com/users/azy2","html_url":"https://github.com/azy2","followers_url":"https://api.github.com/users/azy2/followers","following_url":"https://api.github.co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