{"action":"created","issue":{"url":"https://api.github.com/repos/weecology/sad-comparison/issues/191","repository_url":"https://api.github.com/repos/weecology/sad-comparison","labels_url":"https://api.github.com/repos/weecology/sad-comparison/issues/191/labels{/name}","comments_url":"https://api.github.com/repos/weecology/sad-comparison/issues/191/comments","events_url":"https://api.github.com/repos/weecology/sad-comparison/issues/191/events","html_url":"https://github.com/weecology/sad-comparison/pull/191","id":142819244,"number":191,"title":"add nbinom, modeling & graphing in R","user":{"login":"davharris","id":843017,"avatar_url":"https://avatars.githubusercontent.com/u/843017?v=3","gravatar_id":"","url":"https://api.github.com/users/davharris","html_url":"https://github.com/davharris","followers_url":"https://api.github.com/users/davharris/followers","following_url":"https://api.github.com/users/davharris/following{/other_user}","gists_url":"https://api.github.com/users/davharris/gists{/gist_id}","starred_url":"https://api.github.com/users/davharris/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davharris/subscriptions","organizations_url":"https://api.github.com/users/davharris/orgs","repos_url":"https://api.github.com/users/davharris/repos","events_url":"https://api.github.com/users/davharris/events{/privacy}","received_events_url":"https://api.github.com/users/davharris/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":29,"created_at":"2016-03-23T00:27:21Z","updated_at":"2016-05-12T22:49:22Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/weecology/sad-comparison/pulls/191","html_url":"https://github.com/weecology/sad-comparison/pull/191","diff_url":"https://github.com/weecology/sad-comparison/pull/191.diff","patch_url":"https://github.com/weecology/sad-comparison/pull/191.patch"},"body":"This code does the following:\r\n\r\n1) Calculate log-likelihoods for the negative binomial with R, which seems to have been more reliable for that computation.\r\n\r\n2) Fit a mixed model that summarizes the effect of S and N for each distribution's log-likelihood, as well as the overall differences between methods\r\n\r\n3) Generates example figures that could help address #181 and #182 (see below)\r\n\r\nNote that the code currently assumes BBS data only; it should be straightforward to update it to work across data sets, however.\r\n\r\nWhat do you think?\r\n\r\n![image](https://cloud.githubusercontent.com/assets/843017/13972063/d09ad350-f06b-11e5-9257-98767471488d.png)\r\n![image](https://cloud.githubusercontent.com/assets/843017/13972069/d6372926-f06b-11e5-8836-c74a3c87f948.png)\r\n"},"comment":{"url":"https://api.github.com/repos/weecology/sad-comparison/issues/comments/218907778","html_url":"https://github.com/weecology/sad-comparison/pull/191#issuecomment-218907778","issue_url":"https://api.github.com/repos/weecology/sad-comparison/issues/191","id":218907778,"user":{"login":"embaldridge","id":1770661,"avatar_url":"https://avatars.githubusercontent.com/u/1770661?v=3","gravatar_id":"","url":"https://api.github.com/users/embaldridge","html_url":"https://github.com/embaldridge","followers_url":"https://api.github.com/users/embaldridge/followers","following_url":"https://api.github.com/users/embaldridge/following{/other_user}","gists_url":"https://api.github.com/users/embaldridge/gists{/gist_id}","starred_url":"https://api.github.com/users/embaldridge/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/embaldridge/subscriptions","organizations_url":"https://api.github.com/users/embaldridge/orgs","repos_url":"https://api.github.com/users/embaldridge/repos","events_url":"https://api.github.com/users/embaldridge/events{/privacy}","received_events_url":"https://api.github.com/users/embaldridge/received_events","type":"User","site_admin":false},"created_at":"2016-05-12T22:49:22Z","updated_at":"2016-05-12T22:49:22Z","body":"Fixed.  Shared with USU email, which is not very helpful at this point."}}