{"action":"opened","issue":{"url":"https://api.github.com/repos/tony-yuan/JsHELM/issues/84","repository_url":"https://api.github.com/repos/tony-yuan/JsHELM","labels_url":"https://api.github.com/repos/tony-yuan/JsHELM/issues/84/labels{/name}","comments_url":"https://api.github.com/repos/tony-yuan/JsHELM/issues/84/comments","events_url":"https://api.github.com/repos/tony-yuan/JsHELM/issues/84/events","html_url":"https://github.com/tony-yuan/JsHELM/issues/84","id":188915940,"number":84,"title":"Problem on drawing circle RNA","user":{"login":"tony-yuan","id":19560173,"avatar_url":"https://avatars.githubusercontent.com/u/19560173?v=3","gravatar_id":"","url":"https://api.github.com/users/tony-yuan","html_url":"https://github.com/tony-yuan","followers_url":"https://api.github.com/users/tony-yuan/followers","following_url":"https://api.github.com/users/tony-yuan/following{/other_user}","gists_url":"https://api.github.com/users/tony-yuan/gists{/gist_id}","starred_url":"https://api.github.com/users/tony-yuan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tony-yuan/subscriptions","organizations_url":"https://api.github.com/users/tony-yuan/orgs","repos_url":"https://api.github.com/users/tony-yuan/repos","events_url":"https://api.github.com/users/tony-yuan/events{/privacy}","received_events_url":"https://api.github.com/users/tony-yuan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-11-12T15:02:12Z","updated_at":"2016-11-12T15:02:12Z","closed_at":null,"body":"If you draw a cyclic structure it generates an incorrect HELM string.  You can verify this by drawing a cyclic structure with CHEM links \r\n![t](https://cloud.githubusercontent.com/assets/19560173/20238687/133ab750-a8bf-11e6-9908-5db8ce969d96.png)\r\n\r\nIt will generate a helm string: \r\nCHEM1{[sPi]}|CHEM2{[sPi]}|RNA1{r(A)p.r(C)p.r(T)p.r(G)}$CHEM1,CHEM2,1:R1-1:R2|CHEM2,RNA1,1:R2-1:R1|CHEM1,RNA1,1:R1-10:R2$$$\r\n\r\nThis is incorrect.\r\n\r\n\r\nHit the apply button on the HELM panel.  The structure will flatten out. \r\n"}}
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