{"action":"created","issue":{"url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/issues/85","repository_url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib","labels_url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/issues/85/labels{/name}","comments_url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/issues/85/comments","events_url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/issues/85/events","html_url":"https://github.com/BD2KGenomics/cgl-docker-lib/pull/85","id":134550547,"number":85,"title":"Move away from UID in bash for bwakit.","user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-02-18T11:15:29Z","updated_at":"2016-02-18T18:10:15Z","closed_at":"2016-02-18T17:23:51Z","pull_request":{"url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/pulls/85","html_url":"https://github.com/BD2KGenomics/cgl-docker-lib/pull/85","diff_url":"https://github.com/BD2KGenomics/cgl-docker-lib/pull/85.diff","patch_url":"https://github.com/BD2KGenomics/cgl-docker-lib/pull/85.patch"},"body":"Updating the $UID variable in Bash causes a failure, as UID is a bash internal variable.\r\n\r\n@hannes-ucsc @jpdna between this, #83, and #84, https://github.com/BD2KGenomics/toil-scripts/issues/106 appears to be resolved. At least, it is on my side. @jpdna I'll send you a pointer to my latest branch for you to test."},"comment":{"url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/issues/comments/185840114","html_url":"https://github.com/BD2KGenomics/cgl-docker-lib/pull/85#issuecomment-185840114","issue_url":"https://api.github.com/repos/BD2KGenomics/cgl-docker-lib/issues/85","id":185840114,"user":{"login":"hannes-ucsc","id":5143256,"avatar_url":"https://avatars.githubusercontent.com/u/5143256?v=3","gravatar_id":"","url":"https://api.github.com/users/hannes-ucsc","html_url":"https://github.com/hannes-ucsc","followers_url":"https://api.github.com/users/hannes-ucsc/followers","following_url":"https://api.github.com/users/hannes-ucsc/following{/other_user}","gists_url":"https://api.github.com/users/hannes-ucsc/gists{/gist_id}","starred_url":"https://api.github.com/users/hannes-ucsc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hannes-ucsc/subscriptions","organizations_url":"https://api.github.com/users/hannes-ucsc/orgs","repos_url":"https://api.github.com/users/hannes-ucsc/repos","events_url":"https://api.github.com/users/hannes-ucsc/events{/privacy}","received_events_url":"https://api.github.com/users/hannes-ucsc/received_events","type":"User","site_admin":false},"created_at":"2016-02-18T18:10:15Z","updated_at":"2016-02-18T18:10:15Z","body":"Connected to #86 "}}