{"action":"closed","number":1829,"pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk/pulls/1829","id":70424836,"html_url":"https://github.com/broadinstitute/gatk/pull/1829","diff_url":"https://github.com/broadinstitute/gatk/pull/1829.diff","patch_url":"https://github.com/broadinstitute/gatk/pull/1829.patch","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1829","number":1829,"state":"closed","locked":false,"title":"Revert \"Enable multi-threaded AVX PairHMM\"","user":{"login":"akiezun","id":1993519,"avatar_url":"https://avatars.githubusercontent.com/u/1993519?v=3","gravatar_id":"","url":"https://api.github.com/users/akiezun","html_url":"https://github.com/akiezun","followers_url":"https://api.github.com/users/akiezun/followers","following_url":"https://api.github.com/users/akiezun/following{/other_user}","gists_url":"https://api.github.com/users/akiezun/gists{/gist_id}","starred_url":"https://api.github.com/users/akiezun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/akiezun/subscriptions","organizations_url":"https://api.github.com/users/akiezun/orgs","repos_url":"https://api.github.com/users/akiezun/repos","events_url":"https://api.github.com/users/akiezun/events{/privacy}","received_events_url":"https://api.github.com/users/akiezun/received_events","type":"User","site_admin":false},"body":"Reverts broadinstitute/gatk#1813 for now.\r\n\r\nWe have to revert this because there's no fallback to lack of OMP or incompatible libraries:  https://github.com/broadinstitute/gatk/issues/1819\r\n\r\nWhat happens then is that we build the so file on a one machine and the protected repo uses a different machine and blows up with ```java.lang.UnsatisfiedLinkError: /tmp/libVectorLoglessPairHMM.4842381956752440752.so: /usr/lib/x86_64-linux-gnu/libgomp.so.1: version `GOMP_4.0' not found (required by /tmp/libVectorLoglessPairHMM.4842381956752440752.so)```\r\n\r\n\r\n","created_at":"2016-05-17T20:30:33Z","updated_at":"2016-05-17T21:00:59Z","closed_at":"2016-05-17T21:00:59Z","merged_at":"2016-05-17T21:00:59Z","merge_commit_sha":"7734d1172b60237e6a138202a3d6910ff7dbb7cb","assignee":{"login":"akiezun","id":1993519,"avatar_url":"https://avatars.githubusercontent.com/u/1993519?v=3","gravatar_id":"","url":"https://api.github.com/users/akiezun","html_url":"https://github.com/akiezun","followers_url":"https://api.github.com/users/akiezun/followers","following_url":"https://api.github.com/users/akiezun/following{/other_user}","gists_url":"https://api.github.com/users/akiezun/gists{/gist_id}","starred_url":"https://api.github.com/users/akiezun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/akiezun/subscriptions","organizations_url":"https://api.github.com/users/akiezun/orgs","repos_url":"https://api.github.com/users/akiezun/repos","events_url":"https://api.github.com/users/akiezun/events{/privacy}","received_events_url":"https://api.github.com/users/akiezun/received_events","type":"User","site_admin":false},"milestone":null,"commits_url":"https://api.github.com/repos/broadinstitute/gatk/pulls/1829/commits","review_comments_url":"https://api.github.com/repos/broadinstitute/gatk/pulls/1829/comments","review_comment_url":"https://api.github.com/repos/broadinstitute/gatk/pulls/comments{/number}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1829/comments","statuses_url":"https://api.github.com/repos/broadinstitute/gatk/statuses/1eac4b9f4ad901e84bebacb84f09e17c5e4482bc","head":{"label":"broadinstitute:revert-1813-gp_pairhmm_avx_omp","ref":"revert-1813-gp_pairhmm_avx_omp","sha":"1eac4b9f4ad901e84bebacb84f09e17c5e4482bc","user":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"repo":{"id":27452807,"name":"gatk","full_name":"broadinstitute/gatk","owner":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/broadinstitute/gatk","description":"GATK4 development","fork":false,"url":"https://api.github.com/repos/broadinstitute/gatk","forks_url":"https://api.github.com/repos/broadinstitute/gatk/forks","keys_url":"https://api.github.com/repos/broadinstitute/gatk/keys{/key_id}","collaborators_url":"https://api.github.com/repos/broadinstitute/gatk/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/broadinstitute/gatk/teams","hooks_url":"https://api.github.com/repos/broadinstitute/gatk/hooks","issue_events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/events{/number}","events_url":"https://api.github.com/repos/broadinstitute/gatk/events","assignees_url":"https://api.github.com/repos/broadinstitute/gatk/assignees{/user}","branches_url":"https://api.github.com/repos/broadinstitute/gatk/branches{/branch}","tags_url":"https://api.github.com/repos/broadinstitute/gatk/tags","blobs_url":"https://api.github.com/repos/broadinstitute/gatk/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/broadinstitute/gatk/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/broadinstitute/gatk/git/refs{/sha}","trees_url":"https://api.github.com/repos/broadinstitute/gatk/git/trees{/sha}","statuses_url":"https://api.github.com/repos/broadinstitute/gatk/statuses/{sha}","languages_url":"https://api.github.com/repos/broadinstitute/gatk/languages","stargazers_url":"https://api.github.com/repos/broadinstitute/gatk/stargazers","contributors_url":"https://api.github.com/repos/broadinstitute/gatk/contributors","subscribers_url":"https://api.github.com/repos/broadinstitute/gatk/subscribers","subscription_url":"https://api.github.com/repos/broadinstitute/gatk/subscription","commits_url":"https://api.github.com/repos/broadinstitute/gatk/commits{/sha}","git_commits_url":"https://api.github.com/repos/broadinstitute/gatk/git/commits{/sha}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/comments{/number}","issue_comment_url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments{/number}","contents_url":"https://api.github.com/repos/broadinstitute/gatk/contents/{+path}","compare_url":"https://api.github.com/repos/broadinstitute/gatk/compare/{base}...{head}","merges_url":"https://api.github.com/repos/broadinstitute/gatk/merges","archive_url":"https://api.github.com/repos/broadinstitute/gatk/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/broadinstitute/gatk/downloads","issues_url":"https://api.github.com/repos/broadinstitute/gatk/issues{/number}","pulls_url":"https://api.github.com/repos/broadinstitute/gatk/pulls{/number}","milestones_url":"https://api.github.com/repos/broadinstitute/gatk/milestones{/number}","notifications_url":"https://api.github.com/repos/broadinstitute/gatk/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/broadinstitute/gatk/labels{/name}","releases_url":"https://api.github.com/repos/broadinstitute/gatk/releases{/id}","deployments_url":"https://api.github.com/repos/broadinstitute/gatk/deployments","created_at":"2014-12-02T20:50:36Z","updated_at":"2016-05-15T00:55:15Z","pushed_at":"2016-05-17T21:00:59Z","git_url":"git://github.com/broadinstitute/gatk.git","ssh_url":"git@github.com:broadinstitute/gatk.git","clone_url":"https://github.com/broadinstitute/gatk.git","svn_url":"https://github.com/broadinstitute/gatk","homepage":"","size":110492,"stargazers_count":71,"watchers_count":71,"language":"Java","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":27,"mirror_url":null,"open_issues_count":363,"forks":27,"open_issues":363,"watchers":71,"default_branch":"master"}},"base":{"label":"broadinstitute:master","ref":"master","sha":"79abe31568af502970c5f370e419b6a63599301c","user":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"repo":{"id":27452807,"name":"gatk","full_name":"broadinstitute/gatk","owner":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/broadinstitute/gatk","description":"GATK4 development","fork":false,"url":"https://api.github.com/repos/broadinstitute/gatk","forks_url":"https://api.github.com/repos/broadinstitute/gatk/forks","keys_url":"https://api.github.com/repos/broadinstitute/gatk/keys{/key_id}","collaborators_url":"https://api.github.com/repos/broadinstitute/gatk/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/broadinstitute/gatk/teams","hooks_url":"https://api.github.com/repos/broadinstitute/gatk/hooks","issue_events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/events{/number}","events_url":"https://api.github.com/repos/broadinstitute/gatk/events","assignees_url":"https://api.github.com/repos/broadinstitute/gatk/assignees{/user}","branches_url":"https://api.github.com/repos/broadinstitute/gatk/branches{/branch}","tags_url":"https://api.github.com/repos/broadinstitute/gatk/tags","blobs_url":"https://api.github.com/repos/broadinstitute/gatk/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/broadinstitute/gatk/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/broadinstitute/gatk/git/refs{/sha}","trees_url":"https://api.github.com/repos/broadinstitute/gatk/git/trees{/sha}","statuses_url":"https://api.github.com/repos/broadinstitute/gatk/statuses/{sha}","languages_url":"https://api.github.com/repos/broadinstitute/gatk/languages","stargazers_url":"https://api.github.com/repos/broadinstitute/gatk/stargazers","contributors_url":"https://api.github.com/repos/broadinstitute/gatk/contributors","subscribers_url":"https://api.github.com/repos/broadinstitute/gatk/subscribers","subscription_url":"https://api.github.com/repos/broadinstitute/gatk/subscription","commits_url":"https://api.github.com/repos/broadinstitute/gatk/commits{/sha}","git_commits_url":"https://api.github.com/repos/broadinstitute/gatk/git/commits{/sha}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/comments{/number}","issue_comment_url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments{/number}","contents_url":"https://api.github.com/repos/broadinstitute/gatk/contents/{+path}","compare_url":"https://api.github.com/repos/broadinstitute/gatk/compare/{base}...{head}","merges_url":"https://api.github.com/repos/broadinstitute/gatk/merges","archive_url":"https://api.github.com/repos/broadinstitute/gatk/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/broadinstitute/gatk/downloads","issues_url":"https://api.github.com/repos/broadinstitute/gatk/issues{/number}","pulls_url":"https://api.github.com/repos/broadinstitute/gatk/pulls{/number}","milestones_url":"https://api.github.com/repos/broadinstitute/gatk/milestones{/number}","notifications_url":"https://api.github.com/repos/broadinstitute/gatk/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/broadinstitute/gatk/labels{/name}","releases_url":"https://api.github.com/repos/broadinstitute/gatk/releases{/id}","deployments_url":"https://api.github.com/repos/broadinstitute/gatk/deployments","created_at":"2014-12-02T20:50:36Z","updated_at":"2016-05-15T00:55:15Z","pushed_at":"2016-05-17T21:00:59Z","git_url":"git://github.com/broadinstitute/gatk.git","ssh_url":"git@github.com:broadinstitute/gatk.git","clone_url":"https://github.com/broadinstitute/gatk.git","svn_url":"https://github.com/broadinstitute/gatk","homepage":"","size":110492,"stargazers_count":71,"watchers_count":71,"language":"Java","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":27,"mirror_url":null,"open_issues_count":363,"forks":27,"open_issues":363,"watchers":71,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/gatk/pulls/1829"},"html":{"href":"https://github.com/broadinstitute/gatk/pull/1829"},"issue":{"href":"https://api.github.com/repos/broadinstitute/gatk/issues/1829"},"comments":{"href":"https://api.github.com/repos/broadinstitute/gatk/issues/1829/comments"},"review_comments":{"href":"https://api.github.com/repos/broadinstitute/gatk/pulls/1829/comments"},"review_comment":{"href":"https://api.github.com/repos/broadinstitute/gatk/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/broadinstitute/gatk/pulls/1829/commits"},"statuses":{"href":"https://api.github.com/repos/broadinstitute/gatk/statuses/1eac4b9f4ad901e84bebacb84f09e17c5e4482bc"}},"merged":true,"mergeable":null,"mergeable_state":"unknown","merged_by":{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"comments":2,"review_comments":0,"commits":1,"additions":26,"deletions":48,"changed_files":5}}