{"action":"created","issue":{"url":"https://api.github.com/repos/biolab/orange-bio/issues/73","repository_url":"https://api.github.com/repos/biolab/orange-bio","labels_url":"https://api.github.com/repos/biolab/orange-bio/issues/73/labels{/name}","comments_url":"https://api.github.com/repos/biolab/orange-bio/issues/73/comments","events_url":"https://api.github.com/repos/biolab/orange-bio/issues/73/events","html_url":"https://github.com/biolab/orange-bio/issues/73","id":143964141,"number":73,"title":"OBO ontologies end up undirected","user":{"login":"xapple","id":649288,"avatar_url":"https://avatars.githubusercontent.com/u/649288?v=3","gravatar_id":"","url":"https://api.github.com/users/xapple","html_url":"https://github.com/xapple","followers_url":"https://api.github.com/users/xapple/followers","following_url":"https://api.github.com/users/xapple/following{/other_user}","gists_url":"https://api.github.com/users/xapple/gists{/gist_id}","starred_url":"https://api.github.com/users/xapple/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/xapple/subscriptions","organizations_url":"https://api.github.com/users/xapple/orgs","repos_url":"https://api.github.com/users/xapple/repos","events_url":"https://api.github.com/users/xapple/events{/privacy}","received_events_url":"https://api.github.com/users/xapple/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-03-28T12:25:26Z","updated_at":"2016-03-30T14:20:37Z","closed_at":"2016-03-30T08:35:08Z","body":"Hi !\r\n\r\nI was really happy to see a nice OBO ontology parser for python in your package and think it can be very useful. Of course the first thing I did was use the `to_networkx()` method to manipulate and calculate things on the graph. But the conversion seems to leave out some essential information:\r\n\r\n    In [1]: from orangecontrib.bio.ontology import OBOOntology\r\n    In [2]: onto = OBOOntology('/Users/xapple/seqenv/data/envo.obo')\r\n    In [3]: nwrk = onto.to_networkx()\r\n    In [4]: nwrk.is_directed()\r\n    Out[4]: False\r\n"},"comment":{"url":"https://api.github.com/repos/biolab/orange-bio/issues/comments/203454953","html_url":"https://github.com/biolab/orange-bio/issues/73#issuecomment-203454953","issue_url":"https://api.github.com/repos/biolab/orange-bio/issues/73","id":203454953,"user":{"login":"ales-erjavec","id":4716745,"avatar_url":"https://avatars.githubusercontent.com/u/4716745?v=3","gravatar_id":"","url":"https://api.github.com/users/ales-erjavec","html_url":"https://github.com/ales-erjavec","followers_url":"https://api.github.com/users/ales-erjavec/followers","following_url":"https://api.github.com/users/ales-erjavec/following{/other_user}","gists_url":"https://api.github.com/users/ales-erjavec/gists{/gist_id}","starred_url":"https://api.github.com/users/ales-erjavec/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ales-erjavec/subscriptions","organizations_url":"https://api.github.com/users/ales-erjavec/orgs","repos_url":"https://api.github.com/users/ales-erjavec/repos","events_url":"https://api.github.com/users/ales-erjavec/events{/privacy}","received_events_url":"https://api.github.com/users/ales-erjavec/received_events","type":"User","site_admin":false},"created_at":"2016-03-30T14:20:37Z","updated_at":"2016-03-30T14:20:37Z","body":">  Awesome, thanks for the fix. Can we expect this soon in the PyPI version, or do we have to clone from master ?\r\n\r\nThe latest version from PyPi includes the fix."}}