{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/20","repository_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip","labels_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/20/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/20/comments","events_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/20/events","html_url":"https://github.com/PacificBiosciences/FALCON_unzip/issues/20","id":160816546,"number":20,"title":"lossing p contig sequence","user":{"login":"BenjaminSchwessinger","id":6474886,"avatar_url":"https://avatars.githubusercontent.com/u/6474886?v=3","gravatar_id":"","url":"https://api.github.com/users/BenjaminSchwessinger","html_url":"https://github.com/BenjaminSchwessinger","followers_url":"https://api.github.com/users/BenjaminSchwessinger/followers","following_url":"https://api.github.com/users/BenjaminSchwessinger/following{/other_user}","gists_url":"https://api.github.com/users/BenjaminSchwessinger/gists{/gist_id}","starred_url":"https://api.github.com/users/BenjaminSchwessinger/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BenjaminSchwessinger/subscriptions","organizations_url":"https://api.github.com/users/BenjaminSchwessinger/orgs","repos_url":"https://api.github.com/users/BenjaminSchwessinger/repos","events_url":"https://api.github.com/users/BenjaminSchwessinger/events{/privacy}","received_events_url":"https://api.github.com/users/BenjaminSchwessinger/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":7,"created_at":"2016-06-17T05:48:03Z","updated_at":"2016-06-17T18:43:01Z","closed_at":null,"body":"Thanks for sharing early access to this exciting new tool. I have been running the pipeline successfully after some tweaking till the quiver.py stage on cluster that runs FALCON_04, Falcon Unzip and SMRT analysis smrtanalysis_2.3.0.140936.\r\nBoth Falcon and Falcon_unzip run like a beauty. Quick summary below.\r\n[v8_1_assembly_summary.txt](https://github.com/PacificBiosciences/FALCON_unzip/files/319836/v8_1_assembly_summary.txt)\r\n\r\nI found that two primary contigs, which length is shorter than the cumsum of all corresponding haplotigs contig do not contain any sequence in respective 1-hasm/ folder and the final all_p_ctg.fa file. \r\ne.g. 000017F p_ref.fa length = 1553122 vs. cumsum h_ctg.fa = 2911288\r\nor 27799 vs. 47732\r\n\r\nComments or suggestions on how to handle this?\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/comments/226849554","html_url":"https://github.com/PacificBiosciences/FALCON_unzip/issues/20#issuecomment-226849554","issue_url":"https://api.github.com/repos/PacificBiosciences/FALCON_unzip/issues/20","id":226849554,"user":{"login":"pb-jchin","id":1071734,"avatar_url":"https://avatars.githubusercontent.com/u/1071734?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-jchin","html_url":"https://github.com/pb-jchin","followers_url":"https://api.github.com/users/pb-jchin/followers","following_url":"https://api.github.com/users/pb-jchin/following{/other_user}","gists_url":"https://api.github.com/users/pb-jchin/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-jchin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-jchin/subscriptions","organizations_url":"https://api.github.com/users/pb-jchin/orgs","repos_url":"https://api.github.com/users/pb-jchin/repos","events_url":"https://api.github.com/users/pb-jchin/events{/privacy}","received_events_url":"https://api.github.com/users/pb-jchin/received_events","type":"User","site_admin":false},"created_at":"2016-06-17T18:43:01Z","updated_at":"2016-06-17T18:43:01Z","body":"can you also put the `2-falcon-asm` in the dropbox? Thanks."}}
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