{"action":"published","release":{"url":"https://api.github.com/repos/BIMSBbioinfo/RCAS/releases/3059888","assets_url":"https://api.github.com/repos/BIMSBbioinfo/RCAS/releases/3059888/assets","upload_url":"https://uploads.github.com/repos/BIMSBbioinfo/RCAS/releases/3059888/assets{?name,label}","html_url":"https://github.com/BIMSBbioinfo/RCAS/releases/tag/v0.99.1","id":3059888,"tag_name":"v0.99.1","target_commitish":"1bf5b8db5a7618fedcc7883c30f2a2578ad50f7b","name":"RCAS pre-release v0.99.1","draft":false,"author":{"login":"borauyar","id":6254567,"avatar_url":"https://avatars.githubusercontent.com/u/6254567?v=3","gravatar_id":"","url":"https://api.github.com/users/borauyar","html_url":"https://github.com/borauyar","followers_url":"https://api.github.com/users/borauyar/followers","following_url":"https://api.github.com/users/borauyar/following{/other_user}","gists_url":"https://api.github.com/users/borauyar/gists{/gist_id}","starred_url":"https://api.github.com/users/borauyar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/borauyar/subscriptions","organizations_url":"https://api.github.com/users/borauyar/orgs","repos_url":"https://api.github.com/users/borauyar/repos","events_url":"https://api.github.com/users/borauyar/events{/privacy}","received_events_url":"https://api.github.com/users/borauyar/received_events","type":"User","site_admin":false},"prerelease":true,"created_at":"2016-04-20T12:42:04Z","published_at":"2016-04-20T13:19:13Z","assets":[],"tarball_url":"https://api.github.com/repos/BIMSBbioinfo/RCAS/tarball/v0.99.1","zipball_url":"https://api.github.com/repos/BIMSBbioinfo/RCAS/zipball/v0.99.1","body":"# RCAS 0.99.1\r\nThis is the version of RCAS R package that has passed the automatic tests on Bioconductor on all available platforms. \r\n\r\n## installation\r\n```\r\nlibrary('devtools')\r\ndevtools::install_github('BIMSBbioinfo/RCAS')\r\n```\r\n## usage: \r\n\r\nFirst download input datasets from ENSEMBL (GTF file) and doRiNA (BED file) (or use built-in 'testdata' instead)\r\n\r\nGTF file: \r\n```\r\nwget ftp://ftp.ensembl.org/pub/release-75/gtf/homo_sapiens/Homo_sapiens.GRCh37.75.gtf.gz\r\ngunzip Homo_sapiens.GRCh37.75.gtf.gz\r\n```\r\n\r\nGenerate an annotation report using the GTF file and built-in test data (BED format) as input. \r\n```\r\nlibrary('RCAS')\r\n#RCAS::runReport(gffFilePath = \"Homo_sapiens.GRCh37.75.gtf\",  queryFilePath = \"testdata\", msigdbFilePath = \"testdata\", genomeVersion = 'hg19')\r\n```\r\n\r\n"}}