{"action":"created","issue":{"url":"https://api.github.com/repos/stnava/ANTs/issues/348","repository_url":"https://api.github.com/repos/stnava/ANTs","labels_url":"https://api.github.com/repos/stnava/ANTs/issues/348/labels{/name}","comments_url":"https://api.github.com/repos/stnava/ANTs/issues/348/comments","events_url":"https://api.github.com/repos/stnava/ANTs/issues/348/events","html_url":"https://github.com/stnava/ANTs/issues/348","id":171499984,"number":348,"title":"default masked registration behavior in simple registration scripts","user":{"login":"stnava","id":324222,"avatar_url":"https://avatars.githubusercontent.com/u/324222?v=3","gravatar_id":"","url":"https://api.github.com/users/stnava","html_url":"https://github.com/stnava","followers_url":"https://api.github.com/users/stnava/followers","following_url":"https://api.github.com/users/stnava/following{/other_user}","gists_url":"https://api.github.com/users/stnava/gists{/gist_id}","starred_url":"https://api.github.com/users/stnava/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stnava/subscriptions","organizations_url":"https://api.github.com/users/stnava/orgs","repos_url":"https://api.github.com/users/stnava/repos","events_url":"https://api.github.com/users/stnava/events{/privacy}","received_events_url":"https://api.github.com/users/stnava/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2016-08-16T19:40:54Z","updated_at":"2016-08-16T22:30:52Z","closed_at":null,"body":"regarding this discussion: https://github.com/stnava/ANTs/commit/58cbd30bbfe8116d94847ec14622c45c3d268016\r\n\r\nwe might want to change default masked behavior in `antsRegistrationSyN{Quick.sh}`\r\n\r\ntwo options that we are considering:\r\n\r\n1.  apply mask to all stages\r\n\r\n2. only apply mask at the last stage ( e.g. SyN ) which would allow one to use global features for affine registration and then focus only the deformable mapping\r\n\r\nobviously, we can enable both by adding a 2nd option ( applyMaskToAll ) but this would need to be implemented carefully .... for now, we use the above commits to document how to do this and as a placeholder until this issue is resolved."},"comment":{"url":"https://api.github.com/repos/stnava/ANTs/issues/comments/240259906","html_url":"https://github.com/stnava/ANTs/issues/348#issuecomment-240259906","issue_url":"https://api.github.com/repos/stnava/ANTs/issues/348","id":240259906,"user":{"login":"stnava","id":324222,"avatar_url":"https://avatars.githubusercontent.com/u/324222?v=3","gravatar_id":"","url":"https://api.github.com/users/stnava","html_url":"https://github.com/stnava","followers_url":"https://api.github.com/users/stnava/followers","following_url":"https://api.github.com/users/stnava/following{/other_user}","gists_url":"https://api.github.com/users/stnava/gists{/gist_id}","starred_url":"https://api.github.com/users/stnava/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stnava/subscriptions","organizations_url":"https://api.github.com/users/stnava/orgs","repos_url":"https://api.github.com/users/stnava/repos","events_url":"https://api.github.com/users/stnava/events{/privacy}","received_events_url":"https://api.github.com/users/stnava/received_events","type":"User","site_admin":false},"created_at":"2016-08-16T22:30:52Z","updated_at":"2016-08-16T22:30:52Z","body":"maybe --- if it is clear to you, do you want to make a pull request / some initial attempt at making such a script? "}}
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