{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/2085","repository_url":"https://api.github.com/repos/broadinstitute/gatk","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2085/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2085/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2085/events","html_url":"https://github.com/broadinstitute/gatk/pull/2085","id":170687311,"number":2085,"title":"makeReadTransformer for ReadWalker and LocusWalker","user":{"login":"magicDGS","id":7352559,"avatar_url":"https://avatars.githubusercontent.com/u/7352559?v=3","gravatar_id":"","url":"https://api.github.com/users/magicDGS","html_url":"https://github.com/magicDGS","followers_url":"https://api.github.com/users/magicDGS/followers","following_url":"https://api.github.com/users/magicDGS/following{/other_user}","gists_url":"https://api.github.com/users/magicDGS/gists{/gist_id}","starred_url":"https://api.github.com/users/magicDGS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/magicDGS/subscriptions","organizations_url":"https://api.github.com/users/magicDGS/orgs","repos_url":"https://api.github.com/users/magicDGS/repos","events_url":"https://api.github.com/users/magicDGS/events{/privacy}","received_events_url":"https://api.github.com/users/magicDGS/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"assignees":[{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false}],"milestone":null,"comments":22,"created_at":"2016-08-11T16:23:32Z","updated_at":"2016-12-08T16:00:18Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk/pulls/2085","html_url":"https://github.com/broadinstitute/gatk/pull/2085","diff_url":"https://github.com/broadinstitute/gatk/pull/2085.diff","patch_url":"https://github.com/broadinstitute/gatk/pull/2085.patch"},"body":"In the same way as `makeReadFilter()`, I implemented a function to include read transformers in `ReadWalker` and `LocusWalker` to use already transformed reads in `apply` (as requested in #1886).\n\nThis function could be added to the `GATKSparkTool` too, and include it in `getReads()`.\n"},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments/265776639","html_url":"https://github.com/broadinstitute/gatk/pull/2085#issuecomment-265776639","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2085","id":265776639,"user":{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"created_at":"2016-12-08T16:00:18Z","updated_at":"2016-12-08T16:00:18Z","body":"Re-assigning to @cmnbroad to review the pre/post transformer changes."}}
{"actor":{"display_login":"droazen"}}