{"action":"created","issue":{"url":"https://api.github.com/repos/intermine/intermine/issues/1470","repository_url":"https://api.github.com/repos/intermine/intermine","labels_url":"https://api.github.com/repos/intermine/intermine/issues/1470/labels{/name}","comments_url":"https://api.github.com/repos/intermine/intermine/issues/1470/comments","events_url":"https://api.github.com/repos/intermine/intermine/issues/1470/events","html_url":"https://github.com/intermine/intermine/issues/1470","id":192593446,"number":1470,"title":"ClinVar changed the data 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1.6.10","description":"Xmas 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It looks like ClinVar moved the columns around. Can you check my work? There may be new columns we can add, and I can't find the xrefs columns anymore. I'm running a new build now.\r\n\r\n<table>\r\n<th>\r\n<td>previous column</td>\r\n<td>current column</td>\r\n</th>\r\n<tr>\r\n<td>clinicalSignificance</td>\r\n<td>5</td>\r\n<td>6</td>\r\n</tr>\r\n<tr>\r\n<td>dbSNPXref</td>\r\n<td>6</td>\r\n<td>?</td>\r\n</tr>\r\n<tr>\r\n<td>ncbiXref</td>\r\n<td>7</td>\r\n<td>?</td>\r\n</tr>\r\n<tr>\r\n<td>clinVarXref</td>\r\n<td>8</td>\r\n<td>?</td>\r\n</tr>\r\n<tr>\r\n<td>referenceAllele</td>\r\n<td>25</td>\r\n<td>21</td>\r\n</tr>\r\n<tr>\r\n<td>alternateAllele</td>\r\n<td>26</td>\r\n<td>22</td>\r\n</tr>\r\n</table>\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/intermine/intermine/issues/comments/263914575","html_url":"https://github.com/intermine/intermine/issues/1470#issuecomment-263914575","issue_url":"https://api.github.com/repos/intermine/intermine/issues/1470","id":263914575,"user":{"login":"julie-sullivan","id":1663057,"avatar_url":"https://avatars.githubusercontent.com/u/1663057?v=3","gravatar_id":"","url":"https://api.github.com/users/julie-sullivan","html_url":"https://github.com/julie-sullivan","followers_url":"https://api.github.com/users/julie-sullivan/followers","following_url":"https://api.github.com/users/julie-sullivan/following{/other_user}","gists_url":"https://api.github.com/users/julie-sullivan/gists{/gist_id}","starred_url":"https://api.github.com/users/julie-sullivan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/julie-sullivan/subscriptions","organizations_url":"https://api.github.com/users/julie-sullivan/orgs","repos_url":"https://api.github.com/users/julie-sullivan/repos","events_url":"https://api.github.com/users/julie-sullivan/events{/privacy}","received_events_url":"https://api.github.com/users/julie-sullivan/received_events","type":"User","site_admin":false},"created_at":"2016-11-30T16:09:00Z","updated_at":"2016-11-30T16:09:00Z","body":"Here are the new column headings:\r\n\r\n```\r\n0   #AlleleID\r\n1   Type\r\n2   Name\r\n3   GeneID\r\n4   GeneSymbol\r\n5   HGNC_ID\r\n6   ClinicalSignificance\r\n7   ClinSigSimple\r\n8   LastEvaluated\r\n9   RS# (dbSNP)\r\n10  nsv/esv (dbVar)\r\n11  RCVaccession\r\n12  PhenotypeIDS\r\n13  PhenotypeList\r\n14  Origin\r\n15  OriginSimple\r\n16  Assembly\r\n17  ChromosomeAccession\r\n18  Chromosome\r\n19  Start\r\n20  Stop\r\n21  ReferenceAllele\r\n22  AlternateAllele\r\n23  Cytogenetic\r\n24  ReviewStatus\r\n25  NumberSubmitters\r\n26  Guidelines\r\n27  TestedInGTR\r\n28  OtherIDs\r\n29  SubmitterCategories\r\n```\r\n\r\n\r\n"}}
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