{"action":"created","issue":{"url":"https://api.github.com/repos/ewels/MultiQC/issues/15","repository_url":"https://api.github.com/repos/ewels/MultiQC","labels_url":"https://api.github.com/repos/ewels/MultiQC/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/ewels/MultiQC/issues/15/comments","events_url":"https://api.github.com/repos/ewels/MultiQC/issues/15/events","html_url":"https://github.com/ewels/MultiQC/issues/15","id":105263187,"number":15,"title":"Add to Galaxy","user":{"login":"ewels","id":465550,"avatar_url":"https://avatars.githubusercontent.com/u/465550?v=3","gravatar_id":"","url":"https://api.github.com/users/ewels","html_url":"https://github.com/ewels","followers_url":"https://api.github.com/users/ewels/followers","following_url":"https://api.github.com/users/ewels/following{/other_user}","gists_url":"https://api.github.com/users/ewels/gists{/gist_id}","starred_url":"https://api.github.com/users/ewels/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ewels/subscriptions","organizations_url":"https://api.github.com/users/ewels/orgs","repos_url":"https://api.github.com/users/ewels/repos","events_url":"https://api.github.com/users/ewels/events{/privacy}","received_events_url":"https://api.github.com/users/ewels/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/ewels/MultiQC/labels/core:%20back%20end","name":"core: back end","color":"84b6eb"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/ewels/MultiQC/milestones/9","html_url":"https://github.com/ewels/MultiQC/milestones/v0.7","labels_url":"https://api.github.com/repos/ewels/MultiQC/milestones/9/labels","id":1714089,"number":9,"title":"v0.7","description":"Features to be incorporated into a version 0.7 release.","creator":{"login":"ewels","id":465550,"avatar_url":"https://avatars.githubusercontent.com/u/465550?v=3","gravatar_id":"","url":"https://api.github.com/users/ewels","html_url":"https://github.com/ewels","followers_url":"https://api.github.com/users/ewels/followers","following_url":"https://api.github.com/users/ewels/following{/other_user}","gists_url":"https://api.github.com/users/ewels/gists{/gist_id}","starred_url":"https://api.github.com/users/ewels/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ewels/subscriptions","organizations_url":"https://api.github.com/users/ewels/orgs","repos_url":"https://api.github.com/users/ewels/repos","events_url":"https://api.github.com/users/ewels/events{/privacy}","received_events_url":"https://api.github.com/users/ewels/received_events","type":"User","site_admin":false},"open_issues":14,"closed_issues":12,"state":"open","created_at":"2016-04-18T15:19:28Z","updated_at":"2016-05-19T14:35:05Z","due_on":null,"closed_at":null},"comments":20,"created_at":"2015-09-07T20:11:02Z","updated_at":"2016-05-19T14:59:04Z","closed_at":null,"body":"See the [tutorial](https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial). Maybe wait a bit for it to settle down and become more stable first.."},"comment":{"url":"https://api.github.com/repos/ewels/MultiQC/issues/comments/220350864","html_url":"https://github.com/ewels/MultiQC/issues/15#issuecomment-220350864","issue_url":"https://api.github.com/repos/ewels/MultiQC/issues/15","id":220350864,"user":{"login":"devengineson","id":19409507,"avatar_url":"https://avatars.githubusercontent.com/u/19409507?v=3","gravatar_id":"","url":"https://api.github.com/users/devengineson","html_url":"https://github.com/devengineson","followers_url":"https://api.github.com/users/devengineson/followers","following_url":"https://api.github.com/users/devengineson/following{/other_user}","gists_url":"https://api.github.com/users/devengineson/gists{/gist_id}","starred_url":"https://api.github.com/users/devengineson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/devengineson/subscriptions","organizations_url":"https://api.github.com/users/devengineson/orgs","repos_url":"https://api.github.com/users/devengineson/repos","events_url":"https://api.github.com/users/devengineson/events{/privacy}","received_events_url":"https://api.github.com/users/devengineson/received_events","type":"User","site_admin":false},"created_at":"2016-05-19T14:59:04Z","updated_at":"2016-05-19T14:59:04Z","body":"Hi @ewels , \r\n\r\nThanks for your rapidity!!! After another galactic integration day, several others comments below.\r\n\r\nCheers,\r\n\r\nYvan\r\n\r\n### FastQC: ok\r\n\r\n### Tophat: ok\r\n\r\n### samtools stats: ok\r\n\r\n### cutadapt: ok\r\n\r\n### featureCounts: ok\r\n\r\n### featureCounts: ok\r\n\r\n### Bismark: ok\r\n\r\n### Picard:\r\n\r\n- markdups : OK but MultiQC searchs 'picard.sam.MarkDuplicates' instead of 'picard.sam.markduplicates.MarkDuplicates'. Fix with a sed in command line.\r\n- insertsize : OK\r\n- gcbias : OK\r\n\r\n### Bowtie2:\r\n\r\n- multiQC doesn't seems to work properly with Bowtie2 file... Maybe a filename is required but not in the doc ?\r\n"}}