{"action":"created","issue":{"url":"https://api.github.com/repos/ratschlab/rDiff/issues/4","repository_url":"https://api.github.com/repos/ratschlab/rDiff","labels_url":"https://api.github.com/repos/ratschlab/rDiff/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/ratschlab/rDiff/issues/4/comments","events_url":"https://api.github.com/repos/ratschlab/rDiff/issues/4/events","html_url":"https://github.com/ratschlab/rDiff/issues/4","id":141909827,"number":4,"title":"compilation on el capitan","user":{"login":"gdoura","id":6336188,"avatar_url":"https://avatars.githubusercontent.com/u/6336188?v=3","gravatar_id":"","url":"https://api.github.com/users/gdoura","html_url":"https://github.com/gdoura","followers_url":"https://api.github.com/users/gdoura/followers","following_url":"https://api.github.com/users/gdoura/following{/other_user}","gists_url":"https://api.github.com/users/gdoura/gists{/gist_id}","starred_url":"https://api.github.com/users/gdoura/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gdoura/subscriptions","organizations_url":"https://api.github.com/users/gdoura/orgs","repos_url":"https://api.github.com/users/gdoura/repos","events_url":"https://api.github.com/users/gdoura/events{/privacy}","received_events_url":"https://api.github.com/users/gdoura/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2016-03-18T16:06:13Z","updated_at":"2016-03-22T13:50:40Z","closed_at":null,"body":"I have the following error:\r\n\r\necho Entering ./mex\r\nEntering ./mex\r\ncd mex ; make octave\r\nrm -f *.o\r\n/usr/local/bin/mkoctfile -g --mex get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I/usr/local/bin/../include/bam/ -L/usr/local/bin/../lib/ -lbam -lz -lcurses\r\nget_reads_direct.cpp:282:1: warning: control reaches end of non-void function\r\n      [-Wreturn-type]\r\n}\r\n^\r\n1 warning generated.\r\nUndefined symbols for architecture x86_64:\r\n\r\nThanks!\r\n"},"comment":{"url":"https://api.github.com/repos/ratschlab/rDiff/issues/comments/199825232","html_url":"https://github.com/ratschlab/rDiff/issues/4#issuecomment-199825232","issue_url":"https://api.github.com/repos/ratschlab/rDiff/issues/4","id":199825232,"user":{"login":"gdoura","id":6336188,"avatar_url":"https://avatars.githubusercontent.com/u/6336188?v=3","gravatar_id":"","url":"https://api.github.com/users/gdoura","html_url":"https://github.com/gdoura","followers_url":"https://api.github.com/users/gdoura/followers","following_url":"https://api.github.com/users/gdoura/following{/other_user}","gists_url":"https://api.github.com/users/gdoura/gists{/gist_id}","starred_url":"https://api.github.com/users/gdoura/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gdoura/subscriptions","organizations_url":"https://api.github.com/users/gdoura/orgs","repos_url":"https://api.github.com/users/gdoura/repos","events_url":"https://api.github.com/users/gdoura/events{/privacy}","received_events_url":"https://api.github.com/users/gdoura/received_events","type":"User","site_admin":false},"created_at":"2016-03-22T13:50:40Z","updated_at":"2016-03-22T13:50:40Z","body":"`default:rDiff-master abdel$ ./configure\r\nTo get more information please run: configure -h\r\n======================================\r\nrDiff configure (version )\r\n======================================\r\n\r\nRunning automatic configuration\r\n=> Setting rDiff base directory to \"/Users/abdel/Desktop/rDiff-master\"\r\n\r\nChecking for samtools\r\nInclude found: /Users/abdel/bin/samtools-0.1.7a/\r\nLibrary found: /Users/abdel/bin/samtools-0.1.7a/\r\n=> Setting samtools directory to \"/Users/abdel/bin/samtools-0.1.7a/samtools\"\r\n\r\nChecking for python and Scipy\r\n=> Setting Python path to \"/Library/Frameworks/Python.framework/Versions/2.7/bin/python\"\r\n\r\nchecking for octave\r\n=> Setting octave's path to \"/usr/local/bin/octave\"\r\n=> Setting octave's path to \"/usr/local/bin/mkoctfile\"\r\n\r\nGenerating config file ...\r\nDone.\r\n\r\nPlease use 'make' to compile the mex files before using rDiff.\r\nTo test rDiff use 'make example' or 'make threeexamples'.\r\n\r\ndefault:rDiff-master abdel$ \r\n`"}}