{"action":"created","issue":{"url":"https://api.github.com/repos/Acellera/htmd/issues/56","repository_url":"https://api.github.com/repos/Acellera/htmd","labels_url":"https://api.github.com/repos/Acellera/htmd/issues/56/labels{/name}","comments_url":"https://api.github.com/repos/Acellera/htmd/issues/56/comments","events_url":"https://api.github.com/repos/Acellera/htmd/issues/56/events","html_url":"https://github.com/Acellera/htmd/issues/56","id":159383388,"number":56,"title":".wait() method taking too long.","user":{"login":"alejandrovr","id":16488180,"avatar_url":"https://avatars.githubusercontent.com/u/16488180?v=3","gravatar_id":"","url":"https://api.github.com/users/alejandrovr","html_url":"https://github.com/alejandrovr","followers_url":"https://api.github.com/users/alejandrovr/followers","following_url":"https://api.github.com/users/alejandrovr/following{/other_user}","gists_url":"https://api.github.com/users/alejandrovr/gists{/gist_id}","starred_url":"https://api.github.com/users/alejandrovr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alejandrovr/subscriptions","organizations_url":"https://api.github.com/users/alejandrovr/orgs","repos_url":"https://api.github.com/users/alejandrovr/repos","events_url":"https://api.github.com/users/alejandrovr/events{/privacy}","received_events_url":"https://api.github.com/users/alejandrovr/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":8,"created_at":"2016-06-09T11:15:04Z","updated_at":"2016-06-09T14:06:52Z","closed_at":null,"body":"Hello,\r\nwe are trying to equilibrate the system but when it arrives to \"mdx.wait()\" it takes too long (more than 2 hours and still running) and in the documentation says it will take 5 minutes.\r\n\r\n```python\r\nfrom htmd.protocols.equilibration_v1 import Equilibration\r\nfrom natsort import natsorted\r\nmd = Equilibration()\r\nmd.numsteps = 1000\r\nmd.temperature = 298\r\n\r\nbuilds = natsorted(glob('./docked/build/*/'))\r\nfor i, b in enumerate(builds):\r\n    md.write(b, 'docked/equil/{}/'.format(i+1))\r\n\r\nmdx = AcemdLocal()\r\nmdx.submit(glob('./docked/equil/*/'))\r\n\r\nmdx.wait()\r\n```\r\n\r\nIt does not give any errors, should we still waiting or is there any errors?\r\n"},"comment":{"url":"https://api.github.com/repos/Acellera/htmd/issues/comments/224905259","html_url":"https://github.com/Acellera/htmd/issues/56#issuecomment-224905259","issue_url":"https://api.github.com/repos/Acellera/htmd/issues/56","id":224905259,"user":{"login":"stefdoerr","id":7935362,"avatar_url":"https://avatars.githubusercontent.com/u/7935362?v=3","gravatar_id":"","url":"https://api.github.com/users/stefdoerr","html_url":"https://github.com/stefdoerr","followers_url":"https://api.github.com/users/stefdoerr/followers","following_url":"https://api.github.com/users/stefdoerr/following{/other_user}","gists_url":"https://api.github.com/users/stefdoerr/gists{/gist_id}","starred_url":"https://api.github.com/users/stefdoerr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stefdoerr/subscriptions","organizations_url":"https://api.github.com/users/stefdoerr/orgs","repos_url":"https://api.github.com/users/stefdoerr/repos","events_url":"https://api.github.com/users/stefdoerr/events{/privacy}","received_events_url":"https://api.github.com/users/stefdoerr/received_events","type":"User","site_admin":false},"created_at":"2016-06-09T14:06:52Z","updated_at":"2016-06-09T14:06:52Z","body":"Would be nice though if AcemdLocal did not get stuck and reported something. But I need a test machine to see what goes wrong."}}
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