{"action":"created","comment":{"url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/comments/78288384","id":78288384,"diff_hunk":"@@ -0,0 +1,222 @@\n+---\n+layout: post\n+title: BioJulia 2016 - The First Report\n+author: Kenta Sato\n+---\n+\n+We are pleased to announce releasing\n+[Bio.jl](https://github.com/BioJulia/Bio.jl) 0.4, a minor release but including\n+significant functionality improvements as I promised in [the previous blog\n+post](http://julialang.org/blog/2016/04/biojulia2016).\n+\n+The following features are added since the post:\n+\n+* Online sequence search algorithms.\n+* Sequence data structure for reference genomes.\n+* Data reader and writer for the .2bit file format.\n+* Data reader and writer for the SAM and BAM file formats.\n+* Sequence demultiplexing tool.\n+* Package to handle BGZF files.\n+\n+And many other miscellaneous performance and usability!  Tutorial notebooks are\n+available at <https://github.com/BioJulia/BioTutorials>.  Here I briefly\n+introduce you to these new features one by one.\n+\n+\n+## Online sequence search algorithms\n+\n+Sequence search is definitely an indispensable tool in sequence analysis.","path":"blog/_posts/2016-09-10-biojulia2016-mid.md","position":28,"original_position":28,"commit_id":"714f23a3992e38cd16c829afcf7969ab6802ef50","original_commit_id":"714f23a3992e38cd16c829afcf7969ab6802ef50","user":{"login":"kdmurray91","id":1560490,"avatar_url":"https://avatars.githubusercontent.com/u/1560490?v=3","gravatar_id":"","url":"https://api.github.com/users/kdmurray91","html_url":"https://github.com/kdmurray91","followers_url":"https://api.github.com/users/kdmurray91/followers","following_url":"https://api.github.com/users/kdmurray91/following{/other_user}","gists_url":"https://api.github.com/users/kdmurray91/gists{/gist_id}","starred_url":"https://api.github.com/users/kdmurray91/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kdmurray91/subscriptions","organizations_url":"https://api.github.com/users/kdmurray91/orgs","repos_url":"https://api.github.com/users/kdmurray91/repos","events_url":"https://api.github.com/users/kdmurray91/events{/privacy}","received_events_url":"https://api.github.com/users/kdmurray91/received_events","type":"User","site_admin":false},"body":"`s/definitely//`","created_at":"2016-09-11T05:58:46Z","updated_at":"2016-09-11T05:58:46Z","html_url":"https://github.com/JuliaLang/julialang.github.com/pull/409#discussion_r78288384","pull_request_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409","_links":{"self":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/comments/78288384"},"html":{"href":"https://github.com/JuliaLang/julialang.github.com/pull/409#discussion_r78288384"},"pull_request":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409"}}},"pull_request":{"url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409","id":84776263,"html_url":"https://github.com/JuliaLang/julialang.github.com/pull/409","diff_url":"https://github.com/JuliaLang/julialang.github.com/pull/409.diff","patch_url":"https://github.com/JuliaLang/julialang.github.com/pull/409.patch","issue_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues/409","number":409,"state":"open","locked":false,"title":"add BioJulia 2016 - midterm report","user":{"login":"bicycle1885","id":905683,"avatar_url":"https://avatars.githubusercontent.com/u/905683?v=3","gravatar_id":"","url":"https://api.github.com/users/bicycle1885","html_url":"https://github.com/bicycle1885","followers_url":"https://api.github.com/users/bicycle1885/followers","following_url":"https://api.github.com/users/bicycle1885/following{/other_user}","gists_url":"https://api.github.com/users/bicycle1885/gists{/gist_id}","starred_url":"https://api.github.com/users/bicycle1885/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bicycle1885/subscriptions","organizations_url":"https://api.github.com/users/bicycle1885/orgs","repos_url":"https://api.github.com/users/bicycle1885/repos","events_url":"https://api.github.com/users/bicycle1885/events{/privacy}","received_events_url":"https://api.github.com/users/bicycle1885/received_events","type":"User","site_admin":false},"body":"This is a midterm report of my BioJulia project this year. I wrote about new stuffs I've implemented in the last months. I wanted to wait for the release of Julia 0.5 but it would be okay since RC4 (final RC?) is now available. This should be merged after <https://github.com/JuliaLang/METADATA.jl/pull/6316>.\r\n\r\nCC: @ViralBShah ","created_at":"2016-09-11T04:08:47Z","updated_at":"2016-09-11T05:58:46Z","closed_at":null,"merged_at":null,"merge_commit_sha":"fbe5e45aff1bbc90a349ad290c65e91db1324cd7","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409/commits","review_comments_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409/comments","review_comment_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/comments{/number}","comments_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues/409/comments","statuses_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/statuses/714f23a3992e38cd16c829afcf7969ab6802ef50","head":{"label":"bicycle1885:biojulia2016-mid","ref":"biojulia2016-mid","sha":"714f23a3992e38cd16c829afcf7969ab6802ef50","user":{"login":"bicycle1885","id":905683,"avatar_url":"https://avatars.githubusercontent.com/u/905683?v=3","gravatar_id":"","url":"https://api.github.com/users/bicycle1885","html_url":"https://github.com/bicycle1885","followers_url":"https://api.github.com/users/bicycle1885/followers","following_url":"https://api.github.com/users/bicycle1885/following{/other_user}","gists_url":"https://api.github.com/users/bicycle1885/gists{/gist_id}","starred_url":"https://api.github.com/users/bicycle1885/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bicycle1885/subscriptions","organizations_url":"https://api.github.com/users/bicycle1885/orgs","repos_url":"https://api.github.com/users/bicycle1885/repos","events_url":"https://api.github.com/users/bicycle1885/events{/privacy}","received_events_url":"https://api.github.com/users/bicycle1885/received_events","type":"User","site_admin":false},"repo":{"id":43587945,"name":"julialang.github.com","full_name":"bicycle1885/julialang.github.com","owner":{"login":"bicycle1885","id":905683,"avatar_url":"https://avatars.githubusercontent.com/u/905683?v=3","gravatar_id":"","url":"https://api.github.com/users/bicycle1885","html_url":"https://github.com/bicycle1885","followers_url":"https://api.github.com/users/bicycle1885/followers","following_url":"https://api.github.com/users/bicycle1885/following{/other_user}","gists_url":"https://api.github.com/users/bicycle1885/gists{/gist_id}","starred_url":"https://api.github.com/users/bicycle1885/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bicycle1885/subscriptions","organizations_url":"https://api.github.com/users/bicycle1885/orgs","repos_url":"https://api.github.com/users/bicycle1885/repos","events_url":"https://api.github.com/users/bicycle1885/events{/privacy}","received_events_url":"https://api.github.com/users/bicycle1885/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/bicycle1885/julialang.github.com","description":"Julia Project web site.","fork":true,"url":"https://api.github.com/repos/bicycle1885/julialang.github.com","forks_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/forks","keys_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/keys{/key_id}","collaborators_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/teams","hooks_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/hooks","issue_events_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/issues/events{/number}","events_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/events","assignees_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/assignees{/user}","branches_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/branches{/branch}","tags_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/tags","blobs_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/git/refs{/sha}","trees_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/git/trees{/sha}","statuses_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/statuses/{sha}","languages_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/languages","stargazers_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/stargazers","contributors_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/contributors","subscribers_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/subscribers","subscription_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/subscription","commits_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/commits{/sha}","git_commits_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/git/commits{/sha}","comments_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/comments{/number}","issue_comment_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/issues/comments{/number}","contents_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/contents/{+path}","compare_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/compare/{base}...{head}","merges_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/merges","archive_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/downloads","issues_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/issues{/number}","pulls_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/pulls{/number}","milestones_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/milestones{/number}","notifications_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/labels{/name}","releases_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/releases{/id}","deployments_url":"https://api.github.com/repos/bicycle1885/julialang.github.com/deployments","created_at":"2015-10-03T04:36:14Z","updated_at":"2015-10-03T04:36:15Z","pushed_at":"2016-09-11T05:39:14Z","git_url":"git://github.com/bicycle1885/julialang.github.com.git","ssh_url":"git@github.com:bicycle1885/julialang.github.com.git","clone_url":"https://github.com/bicycle1885/julialang.github.com.git","svn_url":"https://github.com/bicycle1885/julialang.github.com","homepage":"http://julialang.org/","size":9431,"stargazers_count":0,"watchers_count":0,"language":"TeX","has_issues":false,"has_downloads":true,"has_wiki":false,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"JuliaLang:master","ref":"master","sha":"c898f3854bf1be581abaab5976e739d5b3d66838","user":{"login":"JuliaLang","id":743164,"avatar_url":"https://avatars.githubusercontent.com/u/743164?v=3","gravatar_id":"","url":"https://api.github.com/users/JuliaLang","html_url":"https://github.com/JuliaLang","followers_url":"https://api.github.com/users/JuliaLang/followers","following_url":"https://api.github.com/users/JuliaLang/following{/other_user}","gists_url":"https://api.github.com/users/JuliaLang/gists{/gist_id}","starred_url":"https://api.github.com/users/JuliaLang/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JuliaLang/subscriptions","organizations_url":"https://api.github.com/users/JuliaLang/orgs","repos_url":"https://api.github.com/users/JuliaLang/repos","events_url":"https://api.github.com/users/JuliaLang/events{/privacy}","received_events_url":"https://api.github.com/users/JuliaLang/received_events","type":"Organization","site_admin":false},"repo":{"id":2885268,"name":"julialang.github.com","full_name":"JuliaLang/julialang.github.com","owner":{"login":"JuliaLang","id":743164,"avatar_url":"https://avatars.githubusercontent.com/u/743164?v=3","gravatar_id":"","url":"https://api.github.com/users/JuliaLang","html_url":"https://github.com/JuliaLang","followers_url":"https://api.github.com/users/JuliaLang/followers","following_url":"https://api.github.com/users/JuliaLang/following{/other_user}","gists_url":"https://api.github.com/users/JuliaLang/gists{/gist_id}","starred_url":"https://api.github.com/users/JuliaLang/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JuliaLang/subscriptions","organizations_url":"https://api.github.com/users/JuliaLang/orgs","repos_url":"https://api.github.com/users/JuliaLang/repos","events_url":"https://api.github.com/users/JuliaLang/events{/privacy}","received_events_url":"https://api.github.com/users/JuliaLang/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/JuliaLang/julialang.github.com","description":"Julia Project web site.","fork":false,"url":"https://api.github.com/repos/JuliaLang/julialang.github.com","forks_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/forks","keys_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/keys{/key_id}","collaborators_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/teams","hooks_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/hooks","issue_events_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues/events{/number}","events_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/events","assignees_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/assignees{/user}","branches_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/branches{/branch}","tags_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/tags","blobs_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/git/refs{/sha}","trees_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/git/trees{/sha}","statuses_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/statuses/{sha}","languages_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/languages","stargazers_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/stargazers","contributors_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/contributors","subscribers_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/subscribers","subscription_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/subscription","commits_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/commits{/sha}","git_commits_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/git/commits{/sha}","comments_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/comments{/number}","issue_comment_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues/comments{/number}","contents_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/contents/{+path}","compare_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/compare/{base}...{head}","merges_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/merges","archive_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/downloads","issues_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues{/number}","pulls_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls{/number}","milestones_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/milestones{/number}","notifications_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/labels{/name}","releases_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/releases{/id}","deployments_url":"https://api.github.com/repos/JuliaLang/julialang.github.com/deployments","created_at":"2011-11-30T18:22:15Z","updated_at":"2016-08-22T19:42:24Z","pushed_at":"2016-09-11T05:39:14Z","git_url":"git://github.com/JuliaLang/julialang.github.com.git","ssh_url":"git@github.com:JuliaLang/julialang.github.com.git","clone_url":"https://github.com/JuliaLang/julialang.github.com.git","svn_url":"https://github.com/JuliaLang/julialang.github.com","homepage":"http://julialang.org/","size":9521,"stargazers_count":74,"watchers_count":74,"language":"TeX","has_issues":true,"has_downloads":true,"has_wiki":false,"has_pages":true,"forks_count":142,"mirror_url":null,"open_issues_count":19,"forks":142,"open_issues":19,"watchers":74,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409"},"html":{"href":"https://github.com/JuliaLang/julialang.github.com/pull/409"},"issue":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues/409"},"comments":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/issues/409/comments"},"review_comments":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409/comments"},"review_comment":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/pulls/409/commits"},"statuses":{"href":"https://api.github.com/repos/JuliaLang/julialang.github.com/statuses/714f23a3992e38cd16c829afcf7969ab6802ef50"}}}}
{"actor":{"display_login":"kdmurray91"}}