{"action":"created","issue":{"url":"https://api.github.com/repos/vaquerizaslab/tadtool/issues/3","repository_url":"https://api.github.com/repos/vaquerizaslab/tadtool","labels_url":"https://api.github.com/repos/vaquerizaslab/tadtool/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/vaquerizaslab/tadtool/issues/3/comments","events_url":"https://api.github.com/repos/vaquerizaslab/tadtool/issues/3/events","html_url":"https://github.com/vaquerizaslab/tadtool/issues/3","id":172321194,"number":3,"title":"Unable to run example data on Ubuntu","user":{"login":"mthimma","id":9192389,"avatar_url":"https://avatars.githubusercontent.com/u/9192389?v=3","gravatar_id":"","url":"https://api.github.com/users/mthimma","html_url":"https://github.com/mthimma","followers_url":"https://api.github.com/users/mthimma/followers","following_url":"https://api.github.com/users/mthimma/following{/other_user}","gists_url":"https://api.github.com/users/mthimma/gists{/gist_id}","starred_url":"https://api.github.com/users/mthimma/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mthimma/subscriptions","organizations_url":"https://api.github.com/users/mthimma/orgs","repos_url":"https://api.github.com/users/mthimma/repos","events_url":"https://api.github.com/users/mthimma/events{/privacy}","received_events_url":"https://api.github.com/users/mthimma/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2016-08-21T13:30:19Z","updated_at":"2016-08-22T08:00:08Z","closed_at":null,"body":"Hi I would like to use your tool to plot TADs in our sample.\r\n\r\nIn order to do that, I installed everything on my Ubuntu work station 12.04.\r\n\r\nWhen I try with example data provided by you, it throws an error.\r\n\r\nchr12_20-35Mb.matrix.txt\r\n-rw-r--r-- 1 thimmamp kw-users   14424 Aug 18 17:11 chr12_20-35Mb_regions.bed\r\n-rwxr--r-- 1 thimmamp kw-users     443 Aug 18 17:17 chr12_plot.py\r\ndrwxr-xr-x 2 thimmamp kw-users    4096 Aug 18 17:17 .\r\nthimmamp@kw12556:~/RNAiHiCAnalysis/sampledataTADtool$ ./chr12_plot.py \r\nTraceback (most recent call last):\r\n  File \"./chr12_plot.py\", line 3, in <module>\r\n    import tadtool.plot as tp\r\n  File \"/usr/local/lib/python2.7/dist-packages/tadtool/plot.py\", line 8, in <module>\r\n    import matplotlib.pyplot as plt\r\n  File \"/usr/local/lib/python2.7/dist-packages/matplotlib/pyplot.py\", line 114, in <module>\r\n    _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup()\r\n  File \"/usr/local/lib/python2.7/dist-packages/matplotlib/backends/__init__.py\", line 32, in pylab_setup\r\n    globals(),locals(),[backend_name],0)\r\n  File \"/usr/local/lib/python2.7/dist-packages/matplotlib/backends/backend_tkagg.py\", line 13, in <module>\r\n    import matplotlib.backends.tkagg as tkagg\r\n  File \"/usr/local/lib/python2.7/dist-packages/matplotlib/backends/tkagg.py\", line 9, in <module>\r\n    from matplotlib.backends import _tkagg\r\nImportError: cannot import name _tkagg\r\n\r\nI tried updating tk and tk-dev packages and reinstalling matplotlib as well. But the problem still continues...\r\n\r\nDo you suggest any work around for this?\r\n"},"comment":{"url":"https://api.github.com/repos/vaquerizaslab/tadtool/issues/comments/241339664","html_url":"https://github.com/vaquerizaslab/tadtool/issues/3#issuecomment-241339664","issue_url":"https://api.github.com/repos/vaquerizaslab/tadtool/issues/3","id":241339664,"user":{"login":"mthimma","id":9192389,"avatar_url":"https://avatars.githubusercontent.com/u/9192389?v=3","gravatar_id":"","url":"https://api.github.com/users/mthimma","html_url":"https://github.com/mthimma","followers_url":"https://api.github.com/users/mthimma/followers","following_url":"https://api.github.com/users/mthimma/following{/other_user}","gists_url":"https://api.github.com/users/mthimma/gists{/gist_id}","starred_url":"https://api.github.com/users/mthimma/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mthimma/subscriptions","organizations_url":"https://api.github.com/users/mthimma/orgs","repos_url":"https://api.github.com/users/mthimma/repos","events_url":"https://api.github.com/users/mthimma/events{/privacy}","received_events_url":"https://api.github.com/users/mthimma/received_events","type":"User","site_admin":false},"created_at":"2016-08-22T08:00:08Z","updated_at":"2016-08-22T08:00:08Z","body":"Here it is.\r\n\r\n python\r\nPython 2.7.5 (default, Mar  9 2014, 22:15:05) \r\n[GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.0.68)] on darwin\r\nType \"help\", \"copyright\", \"credits\" or \"license\" for more information.\r\n>>> import numpy\r\n>>> numpy.__version__\r\n'1.6.2'\r\n"}}
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