{"action":"created","issue":{"url":"https://api.github.com/repos/infphilo/hisat2/issues/55","repository_url":"https://api.github.com/repos/infphilo/hisat2","labels_url":"https://api.github.com/repos/infphilo/hisat2/issues/55/labels{/name}","comments_url":"https://api.github.com/repos/infphilo/hisat2/issues/55/comments","events_url":"https://api.github.com/repos/infphilo/hisat2/issues/55/events","html_url":"https://github.com/infphilo/hisat2/issues/55","id":160844846,"number":55,"title":"Use of uninitialized value $l in scalar chomp at hisat2 line 536","user":{"login":"pandafish123","id":19991955,"avatar_url":"https://avatars.githubusercontent.com/u/19991955?v=3","gravatar_id":"","url":"https://api.github.com/users/pandafish123","html_url":"https://github.com/pandafish123","followers_url":"https://api.github.com/users/pandafish123/followers","following_url":"https://api.github.com/users/pandafish123/following{/other_user}","gists_url":"https://api.github.com/users/pandafish123/gists{/gist_id}","starred_url":"https://api.github.com/users/pandafish123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pandafish123/subscriptions","organizations_url":"https://api.github.com/users/pandafish123/orgs","repos_url":"https://api.github.com/users/pandafish123/repos","events_url":"https://api.github.com/users/pandafish123/events{/privacy}","received_events_url":"https://api.github.com/users/pandafish123/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-06-17T09:12:51Z","updated_at":"2016-07-12T11:51:37Z","closed_at":"2016-07-04T15:52:31Z","body":"Hi, professor\r\n\r\nRecently, i was dealing with transcriptome using lastest version hisat2. However, there are some problems.\r\n\r\nThe error message is :\r\nUse of uninitialized value $l in scalar chomp at /mnt/data/app/bio/hisat2-2.0.0-beta/hisat2 line 535, <BT> line 45850077.\r\nUse of uninitialized value $l in substitution (s///) at /mnt/data/app/bio/hisat2-2.0.0-beta/hisat2 line 536, <BT> line 45850077.\r\n(ERR): hisat2-align died with signal 11 (SEGV)\r\n\r\nAny clues. \r\n\r\nThank you"},"comment":{"url":"https://api.github.com/repos/infphilo/hisat2/issues/comments/232023064","html_url":"https://github.com/infphilo/hisat2/issues/55#issuecomment-232023064","issue_url":"https://api.github.com/repos/infphilo/hisat2/issues/55","id":232023064,"user":{"login":"blaiseli","id":3380503,"avatar_url":"https://avatars.githubusercontent.com/u/3380503?v=3","gravatar_id":"","url":"https://api.github.com/users/blaiseli","html_url":"https://github.com/blaiseli","followers_url":"https://api.github.com/users/blaiseli/followers","following_url":"https://api.github.com/users/blaiseli/following{/other_user}","gists_url":"https://api.github.com/users/blaiseli/gists{/gist_id}","starred_url":"https://api.github.com/users/blaiseli/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/blaiseli/subscriptions","organizations_url":"https://api.github.com/users/blaiseli/orgs","repos_url":"https://api.github.com/users/blaiseli/repos","events_url":"https://api.github.com/users/blaiseli/events{/privacy}","received_events_url":"https://api.github.com/users/blaiseli/received_events","type":"User","site_admin":false},"created_at":"2016-07-12T11:51:37Z","updated_at":"2016-07-12T11:51:37Z","body":"I have the same problem with version 2.0.4:\r\n\r\n    Time loading forward index: 00:00:00\r\n    Time loading reference: 00:00:00\r\n    Use of uninitialized value $l in scalar chomp at /home/bli/bin/hisat2 line 536, <BT> line 902.\r\n    Use of uninitialized value $l in substitution (s///) at /home/bli/bin/hisat2 line 537, <BT> line 902.\r\n    (ERR): hisat2-align died with signal 11 (SEGV) (core dumped)\r\n\r\nI'm mapping data using `wbcel235_tran/genome_tran` which I obtained from <ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/data/wbcel235_tran.tar.gz>\r\n"}}
{"actor":{"display_login":"blaiseli"}}