{"action":"closed","issue":{"url":"https://api.github.com/repos/samtools/htsjdk/issues/545","repository_url":"https://api.github.com/repos/samtools/htsjdk","labels_url":"https://api.github.com/repos/samtools/htsjdk/issues/545/labels{/name}","comments_url":"https://api.github.com/repos/samtools/htsjdk/issues/545/comments","events_url":"https://api.github.com/repos/samtools/htsjdk/issues/545/events","html_url":"https://github.com/samtools/htsjdk/issues/545","id":144932344,"number":545,"title":"SRA tests fail with missing accession","user":{"login":"nh13","id":846274,"avatar_url":"https://avatars.githubusercontent.com/u/846274?v=3","gravatar_id":"","url":"https://api.github.com/users/nh13","html_url":"https://github.com/nh13","followers_url":"https://api.github.com/users/nh13/followers","following_url":"https://api.github.com/users/nh13/following{/other_user}","gists_url":"https://api.github.com/users/nh13/gists{/gist_id}","starred_url":"https://api.github.com/users/nh13/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nh13/subscriptions","organizations_url":"https://api.github.com/users/nh13/orgs","repos_url":"https://api.github.com/users/nh13/repos","events_url":"https://api.github.com/users/nh13/events{/privacy}","received_events_url":"https://api.github.com/users/nh13/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"eitanbanks","id":2751498,"avatar_url":"https://avatars.githubusercontent.com/u/2751498?v=3","gravatar_id":"","url":"https://api.github.com/users/eitanbanks","html_url":"https://github.com/eitanbanks","followers_url":"https://api.github.com/users/eitanbanks/followers","following_url":"https://api.github.com/users/eitanbanks/following{/other_user}","gists_url":"https://api.github.com/users/eitanbanks/gists{/gist_id}","starred_url":"https://api.github.com/users/eitanbanks/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/eitanbanks/subscriptions","organizations_url":"https://api.github.com/users/eitanbanks/orgs","repos_url":"https://api.github.com/users/eitanbanks/repos","events_url":"https://api.github.com/users/eitanbanks/events{/privacy}","received_events_url":"https://api.github.com/users/eitanbanks/received_events","type":"User","site_admin":false},"assignees":[{"login":"eitanbanks","id":2751498,"avatar_url":"https://avatars.githubusercontent.com/u/2751498?v=3","gravatar_id":"","url":"https://api.github.com/users/eitanbanks","html_url":"https://github.com/eitanbanks","followers_url":"https://api.github.com/users/eitanbanks/followers","following_url":"https://api.github.com/users/eitanbanks/following{/other_user}","gists_url":"https://api.github.com/users/eitanbanks/gists{/gist_id}","starred_url":"https://api.github.com/users/eitanbanks/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/eitanbanks/subscriptions","organizations_url":"https://api.github.com/users/eitanbanks/orgs","repos_url":"https://api.github.com/users/eitanbanks/repos","events_url":"https://api.github.com/users/eitanbanks/events{/privacy}","received_events_url":"https://api.github.com/users/eitanbanks/received_events","type":"User","site_admin":false}],"milestone":null,"comments":9,"created_at":"2016-03-31T15:20:47Z","updated_at":"2016-08-25T12:25:05Z","closed_at":"2016-08-25T12:25:05Z","body":"### Description\r\nSee the travis build log: https://s3.amazonaws.com/archive.travis-ci.org/jobs/119821702/log.txt\r\n\r\n```\r\n   [testng] FAILED: (\"SRR1063272\", 0, 99, \"SRR1063272.R.1\", \"ACTCGACATTCTGCCTTCGACCTATCTTTCTCCTCTCCCAGTCATCGCCCAGTAGAATTACCAGGCAATGAACCAGGGCCTTCCATCCCAACGGCACAGCA\", \"@@CDDBDFFBFHFIEEFGIGGHIEHIGIGGFGEGAFDHIIIIIGGGDFHII;=BF@FEHGIEEH?AHHFHFFFFDC5'5=?CC?ADCD@AC??9BDDCDB<\", 86, \"101M\", \"supercont2.1\", 60, true, false)\r\n   [testng] java.lang.IllegalArgumentException: Invalid SRA accession was passed to SRA reader: SRR1063272\r\n```\r\n\r\nThis blocks https://github.com/samtools/htsjdk/pull/516 and likely any other PR that encounters these issues\r\n\r\n### Desired Actions\r\nI would like to know why the test failed and  what are the plans to ensure that the test does not fail in the future.   This may not be a new issue, see https://github.com/samtools/htsjdk/issues/461, so I am looking for a detailed response and robust solution if this is a re-occurrence.\r\n\r\n@a-nikitiuk could you take a look or route to the appropriate person?  \r\n\r\nThank-you in advance to anyone who has the chance to take a look."}}
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