{"action":"created","issue":{"url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/issues/50","labels_url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/issues/50/labels{/name}","comments_url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/issues/50/comments","events_url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/issues/50/events","html_url":"https://github.com/HadoopGenomics/Hadoop-BAM/pull/50","id":126931781,"number":50,"title":"Pass a reference source through to SAMHeaderReader.readSAMHeaderFrom.","user":{"login":"cmnbroad","id":10062863,"avatar_url":"https://avatars.githubusercontent.com/u/10062863?v=3","gravatar_id":"","url":"https://api.github.com/users/cmnbroad","html_url":"https://github.com/cmnbroad","followers_url":"https://api.github.com/users/cmnbroad/followers","following_url":"https://api.github.com/users/cmnbroad/following{/other_user}","gists_url":"https://api.github.com/users/cmnbroad/gists{/gist_id}","starred_url":"https://api.github.com/users/cmnbroad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmnbroad/subscriptions","organizations_url":"https://api.github.com/users/cmnbroad/orgs","repos_url":"https://api.github.com/users/cmnbroad/repos","events_url":"https://api.github.com/users/cmnbroad/events{/privacy}","received_events_url":"https://api.github.com/users/cmnbroad/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-01-15T18:42:26Z","updated_at":"2016-01-18T20:00:03Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/pulls/50","html_url":"https://github.com/HadoopGenomics/Hadoop-BAM/pull/50","diff_url":"https://github.com/HadoopGenomics/Hadoop-BAM/pull/50.diff","patch_url":"https://github.com/HadoopGenomics/Hadoop-BAM/pull/50.patch"},"body":"readSAMHeaderFrom will fail on CRAM files using newer versions of htsjdk ((2.0.1) because a reference source is required for CRAM files, so we need to pass one through."},"comment":{"url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/issues/comments/172636908","html_url":"https://github.com/HadoopGenomics/Hadoop-BAM/pull/50#issuecomment-172636908","issue_url":"https://api.github.com/repos/HadoopGenomics/Hadoop-BAM/issues/50","id":172636908,"user":{"login":"cmnbroad","id":10062863,"avatar_url":"https://avatars.githubusercontent.com/u/10062863?v=3","gravatar_id":"","url":"https://api.github.com/users/cmnbroad","html_url":"https://github.com/cmnbroad","followers_url":"https://api.github.com/users/cmnbroad/followers","following_url":"https://api.github.com/users/cmnbroad/following{/other_user}","gists_url":"https://api.github.com/users/cmnbroad/gists{/gist_id}","starred_url":"https://api.github.com/users/cmnbroad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmnbroad/subscriptions","organizations_url":"https://api.github.com/users/cmnbroad/orgs","repos_url":"https://api.github.com/users/cmnbroad/repos","events_url":"https://api.github.com/users/cmnbroad/events{/privacy}","received_events_url":"https://api.github.com/users/cmnbroad/received_events","type":"User","site_admin":false},"created_at":"2016-01-18T20:00:03Z","updated_at":"2016-01-18T20:00:03Z","body":"Sure. I'll update the PR to reflect that."}}