{"action":"created","issue":{"url":"https://api.github.com/repos/UCSC-Treehouse/operations/issues/26","repository_url":"https://api.github.com/repos/UCSC-Treehouse/operations","labels_url":"https://api.github.com/repos/UCSC-Treehouse/operations/issues/26/labels{/name}","comments_url":"https://api.github.com/repos/UCSC-Treehouse/operations/issues/26/comments","events_url":"https://api.github.com/repos/UCSC-Treehouse/operations/issues/26/events","html_url":"https://github.com/UCSC-Treehouse/operations/issues/26","id":195450746,"number":26,"title":"TPM with Hugo IDs on future processed data","user":{"login":"hbeale","id":54659,"avatar_url":"https://avatars.githubusercontent.com/u/54659?v=3","gravatar_id":"","url":"https://api.github.com/users/hbeale","html_url":"https://github.com/hbeale","followers_url":"https://api.github.com/users/hbeale/followers","following_url":"https://api.github.com/users/hbeale/following{/other_user}","gists_url":"https://api.github.com/users/hbeale/gists{/gist_id}","starred_url":"https://api.github.com/users/hbeale/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbeale/subscriptions","organizations_url":"https://api.github.com/users/hbeale/orgs","repos_url":"https://api.github.com/users/hbeale/repos","events_url":"https://api.github.com/users/hbeale/events{/privacy}","received_events_url":"https://api.github.com/users/hbeale/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"e-t-k","id":19291809,"avatar_url":"https://avatars.githubusercontent.com/u/19291809?v=3","gravatar_id":"","url":"https://api.github.com/users/e-t-k","html_url":"https://github.com/e-t-k","followers_url":"https://api.github.com/users/e-t-k/followers","following_url":"https://api.github.com/users/e-t-k/following{/other_user}","gists_url":"https://api.github.com/users/e-t-k/gists{/gist_id}","starred_url":"https://api.github.com/users/e-t-k/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/e-t-k/subscriptions","organizations_url":"https://api.github.com/users/e-t-k/orgs","repos_url":"https://api.github.com/users/e-t-k/repos","events_url":"https://api.github.com/users/e-t-k/events{/privacy}","received_events_url":"https://api.github.com/users/e-t-k/received_events","type":"User","site_admin":false},"assignees":[{"login":"e-t-k","id":19291809,"avatar_url":"https://avatars.githubusercontent.com/u/19291809?v=3","gravatar_id":"","url":"https://api.github.com/users/e-t-k","html_url":"https://github.com/e-t-k","followers_url":"https://api.github.com/users/e-t-k/followers","following_url":"https://api.github.com/users/e-t-k/following{/other_user}","gists_url":"https://api.github.com/users/e-t-k/gists{/gist_id}","starred_url":"https://api.github.com/users/e-t-k/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/e-t-k/subscriptions","organizations_url":"https://api.github.com/users/e-t-k/orgs","repos_url":"https://api.github.com/users/e-t-k/repos","events_url":"https://api.github.com/users/e-t-k/events{/privacy}","received_events_url":"https://api.github.com/users/e-t-k/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2016-12-14T06:29:45Z","updated_at":"2016-12-16T00:04:49Z","closed_at":null,"body":"We either need to add a conversion of ensembl ids to hugo ids to the rna-seq pipeline, or convert them separately. \r\n\r\nFor our future reference, the details of conversion are here:\r\nhttps://www.synapse.org/#!Synapse:syn6041633/wiki/410931"},"comment":{"url":"https://api.github.com/repos/UCSC-Treehouse/operations/issues/comments/267481331","html_url":"https://github.com/UCSC-Treehouse/operations/issues/26#issuecomment-267481331","issue_url":"https://api.github.com/repos/UCSC-Treehouse/operations/issues/26","id":267481331,"user":{"login":"e-t-k","id":19291809,"avatar_url":"https://avatars.githubusercontent.com/u/19291809?v=3","gravatar_id":"","url":"https://api.github.com/users/e-t-k","html_url":"https://github.com/e-t-k","followers_url":"https://api.github.com/users/e-t-k/followers","following_url":"https://api.github.com/users/e-t-k/following{/other_user}","gists_url":"https://api.github.com/users/e-t-k/gists{/gist_id}","starred_url":"https://api.github.com/users/e-t-k/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/e-t-k/subscriptions","organizations_url":"https://api.github.com/users/e-t-k/orgs","repos_url":"https://api.github.com/users/e-t-k/repos","events_url":"https://api.github.com/users/e-t-k/events{/privacy}","received_events_url":"https://api.github.com/users/e-t-k/received_events","type":"User","site_admin":false},"created_at":"2016-12-16T00:04:49Z","updated_at":"2016-12-16T00:04:49Z","body":"For the short term, I've set up some scripts for manual conversion, using the empirical mapping file that @hbeale generated:\r\n\r\nhttps://github.com/UCSC-MedBook/data-wrangling-scripts/tree/master/TPM_import\r\n\r\n"}}
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