{"action":"opened","issue":{"url":"https://api.github.com/repos/broadinstitute/viral-ngs/issues/499","repository_url":"https://api.github.com/repos/broadinstitute/viral-ngs","labels_url":"https://api.github.com/repos/broadinstitute/viral-ngs/issues/499/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/viral-ngs/issues/499/comments","events_url":"https://api.github.com/repos/broadinstitute/viral-ngs/issues/499/events","html_url":"https://github.com/broadinstitute/viral-ngs/issues/499","id":178360382,"number":499,"title":"Depend on conda-forge channel","user":{"login":"tomkinsc","id":53064,"avatar_url":"https://avatars.githubusercontent.com/u/53064?v=3","gravatar_id":"","url":"https://api.github.com/users/tomkinsc","html_url":"https://github.com/tomkinsc","followers_url":"https://api.github.com/users/tomkinsc/followers","following_url":"https://api.github.com/users/tomkinsc/following{/other_user}","gists_url":"https://api.github.com/users/tomkinsc/gists{/gist_id}","starred_url":"https://api.github.com/users/tomkinsc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tomkinsc/subscriptions","organizations_url":"https://api.github.com/users/tomkinsc/orgs","repos_url":"https://api.github.com/users/tomkinsc/repos","events_url":"https://api.github.com/users/tomkinsc/events{/privacy}","received_events_url":"https://api.github.com/users/tomkinsc/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-09-21T14:17:42Z","updated_at":"2016-09-21T14:17:42Z","closed_at":null,"body":"The `defaults` conda channel is likely to fall out of date as Continuum favors `conda-forge`. We should start depending on conda-forge. This will require changes in a few places:\r\n\r\nThe [conda config](https://github.com/broadinstitute/viral-ngs/blob/master/travis/install-conda.sh#L43) should depend on the `conda-forge` channel:\r\n```shell\r\nconda config --add channels bioconda\r\nconda config --add channels conda-forge # <===\r\nconda config --add channels r\r\n```\r\nThe [docs](https://github.com/broadinstitute/viral-ngs/blob/master/docs/install.rst#configure-conda), and the easy-deploy script should also be updated if we add another channel dependency. In the script, multiple channels can be specified with additional `-c` params: `-c <channel> -c <channel2>`"}}
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