{"action":"created","issue":{"url":"https://api.github.com/repos/arq5x/poretools/issues/77","repository_url":"https://api.github.com/repos/arq5x/poretools","labels_url":"https://api.github.com/repos/arq5x/poretools/issues/77/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/poretools/issues/77/comments","events_url":"https://api.github.com/repos/arq5x/poretools/issues/77/events","html_url":"https://github.com/arq5x/poretools/issues/77","id":146351895,"number":77,"title":"KeyError in yield_plot and occupancy ","user":{"login":"sshs21","id":6200889,"avatar_url":"https://avatars.githubusercontent.com/u/6200889?v=3","gravatar_id":"","url":"https://api.github.com/users/sshs21","html_url":"https://github.com/sshs21","followers_url":"https://api.github.com/users/sshs21/followers","following_url":"https://api.github.com/users/sshs21/following{/other_user}","gists_url":"https://api.github.com/users/sshs21/gists{/gist_id}","starred_url":"https://api.github.com/users/sshs21/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sshs21/subscriptions","organizations_url":"https://api.github.com/users/sshs21/orgs","repos_url":"https://api.github.com/users/sshs21/repos","events_url":"https://api.github.com/users/sshs21/events{/privacy}","received_events_url":"https://api.github.com/users/sshs21/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-04-06T15:33:00Z","updated_at":"2016-10-14T20:54:57Z","closed_at":null,"body":"I think there may be a problem with these options for fail reads.  I get KeyError: 'template'  when I attempt these options for fail reads (MAP007,  minKnow version 0.51.1.62, poretools version 0.5.1)  I get the following error.  I do not get this error for pass reads\r\n\r\nCommand:   poretools_main.py  yield_plot CNV_022516/reads/downloads/fail/\r\n\r\nError: \r\nFile \"/seq/sara/poretools-master/poretools/poretools_main.py\", line 519, in <module>\r\n    main()\r\n  File \"/seq/sara/poretools-master/poretools/poretools_main.py\", line 513, in main\r\n    args.func(parser, args)\r\n  File \"/seq/sara/poretools-master/poretools/poretools_main.py\", line 53, in run_subtool\r\n    submodule.run(parser, args)\r\n  File \"/isilon/seq/sara/poretools-master/poretools/yield_plot.py\", line 72, in run\r\n    start_time = fast5.get_start_time()\r\n  File \"/isilon/seq/sara/poretools-master/poretools/Fast5File.py\", line 469, in get_start_time\r\n    node = self.find_event_timing_block()\r\n  File \"/isilon/seq/sara/poretools-master/poretools/Fast5File.py\", line 439, in find_event_timing_block\r\n    path = fastq_paths[self.version]['template'] % (self.group)\r\nKeyError: 'template'\r\n\r\nThank for your help\r\n"},"comment":{"url":"https://api.github.com/repos/arq5x/poretools/issues/comments/253916795","html_url":"https://github.com/arq5x/poretools/issues/77#issuecomment-253916795","issue_url":"https://api.github.com/repos/arq5x/poretools/issues/77","id":253916795,"user":{"login":"skbrimer","id":4447895,"avatar_url":"https://avatars.githubusercontent.com/u/4447895?v=3","gravatar_id":"","url":"https://api.github.com/users/skbrimer","html_url":"https://github.com/skbrimer","followers_url":"https://api.github.com/users/skbrimer/followers","following_url":"https://api.github.com/users/skbrimer/following{/other_user}","gists_url":"https://api.github.com/users/skbrimer/gists{/gist_id}","starred_url":"https://api.github.com/users/skbrimer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/skbrimer/subscriptions","organizations_url":"https://api.github.com/users/skbrimer/orgs","repos_url":"https://api.github.com/users/skbrimer/repos","events_url":"https://api.github.com/users/skbrimer/events{/privacy}","received_events_url":"https://api.github.com/users/skbrimer/received_events","type":"User","site_admin":false},"created_at":"2016-10-14T20:54:56Z","updated_at":"2016-10-14T20:54:56Z","body":"I too am having this problem using poretools 0.6.0"}}
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