{"action":"created","issue":{"url":"https://api.github.com/repos/arq5x/gemini/issues/588","labels_url":"https://api.github.com/repos/arq5x/gemini/issues/588/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/gemini/issues/588/comments","events_url":"https://api.github.com/repos/arq5x/gemini/issues/588/events","html_url":"https://github.com/arq5x/gemini/issues/588","id":114644447,"number":588,"title":"add ExAC non TCGA  to annotations","user":{"login":"brentp","id":1739,"avatar_url":"https://avatars.githubusercontent.com/u/1739?v=3","gravatar_id":"","url":"https://api.github.com/users/brentp","html_url":"https://github.com/brentp","followers_url":"https://api.github.com/users/brentp/followers","following_url":"https://api.github.com/users/brentp/following{/other_user}","gists_url":"https://api.github.com/users/brentp/gists{/gist_id}","starred_url":"https://api.github.com/users/brentp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brentp/subscriptions","organizations_url":"https://api.github.com/users/brentp/orgs","repos_url":"https://api.github.com/users/brentp/repos","events_url":"https://api.github.com/users/brentp/events{/privacy}","received_events_url":"https://api.github.com/users/brentp/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-11-02T17:32:55Z","updated_at":"2016-01-15T18:52:46Z","closed_at":null,"body":"ExAC now provides a site VCF that excludes TCGA samples. There is also a non-psych sites VCF.\r\nWe could probably merge all 3 in the provenance and add, e.g. AC_ntcga=...;AC_npsyc=...;\r\nso that we don't add 2 extra huge files to the downloads."},"comment":{"url":"https://api.github.com/repos/arq5x/gemini/issues/comments/172051563","html_url":"https://github.com/arq5x/gemini/issues/588#issuecomment-172051563","issue_url":"https://api.github.com/repos/arq5x/gemini/issues/588","id":172051563,"user":{"login":"davemcg","id":10225430,"avatar_url":"https://avatars.githubusercontent.com/u/10225430?v=3","gravatar_id":"","url":"https://api.github.com/users/davemcg","html_url":"https://github.com/davemcg","followers_url":"https://api.github.com/users/davemcg/followers","following_url":"https://api.github.com/users/davemcg/following{/other_user}","gists_url":"https://api.github.com/users/davemcg/gists{/gist_id}","starred_url":"https://api.github.com/users/davemcg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davemcg/subscriptions","organizations_url":"https://api.github.com/users/davemcg/orgs","repos_url":"https://api.github.com/users/davemcg/repos","events_url":"https://api.github.com/users/davemcg/events{/privacy}","received_events_url":"https://api.github.com/users/davemcg/received_events","type":"User","site_admin":false},"created_at":"2016-01-15T18:52:46Z","updated_at":"2016-01-15T18:52:46Z","body":"Yes please! I've been using this in my VEP annotations. I was thinking I could just use Gemini's ExAC, then I wondered \"wait, what version are they using?\" I suggest the nonTCGA ExAC numbers become the default for Gemini. "}}