{"action":"closed","number":56,"pull_request":{"url":"https://api.github.com/repos/bioinform/varsim/pulls/56","id":89058455,"html_url":"https://github.com/bioinform/varsim/pull/56","diff_url":"https://github.com/bioinform/varsim/pull/56.diff","patch_url":"https://github.com/bioinform/varsim/pull/56.patch","issue_url":"https://api.github.com/repos/bioinform/varsim/issues/56","number":56,"state":"closed","locked":false,"title":"Add translocation in simulation","user":{"login":"yunfeiguo","id":7737294,"avatar_url":"https://avatars.githubusercontent.com/u/7737294?v=3","gravatar_id":"","url":"https://api.github.com/users/yunfeiguo","html_url":"https://github.com/yunfeiguo","followers_url":"https://api.github.com/users/yunfeiguo/followers","following_url":"https://api.github.com/users/yunfeiguo/following{/other_user}","gists_url":"https://api.github.com/users/yunfeiguo/gists{/gist_id}","starred_url":"https://api.github.com/users/yunfeiguo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yunfeiguo/subscriptions","organizations_url":"https://api.github.com/users/yunfeiguo/orgs","repos_url":"https://api.github.com/users/yunfeiguo/repos","events_url":"https://api.github.com/users/yunfeiguo/events{/privacy}","received_events_url":"https://api.github.com/users/yunfeiguo/received_events","type":"User","site_admin":false},"body":"- [x] [RES-309](https://binatechnologies.atlassian.net/browse/RES-309), [RES-339](https://binatechnologies.atlassian.net/browse/RES-339)\r\n- [x] Blocking PRs: ADD HERE IF ANY\r\n* People\r\n  - [x] Reviewers (>=1): @marghoob \r\n  - [x] Merger (>=1): @marghoob \r\n  - [x] FYI: ADD HERE IF ANY\r\n\r\n- [x] Tests (Unit, Workflow, ITL & Gherkin) are passing\r\n\r\nSummary\r\n\r\nSupport for a new type of structural variation has been added (`<TRA>`), along with some meta data in `INFO` column. A new class for parsing `INFO` was created for easier implementation of VCFParser. 17 different types (balanced, unbalanced, reciprocal, nonreciprocal, gain, loss) translocations were individually tested in the context of simulation (`VCF2Diploid`).","created_at":"2016-10-12T17:29:54Z","updated_at":"2016-10-13T16:45:55Z","closed_at":"2016-10-13T16:45:55Z","merged_at":"2016-10-13T16:45:55Z","merge_commit_sha":"4e2364c923d42b68baf69609206ac6309ad31678","assignee":{"login":"marghoob","id":885355,"avatar_url":"https://avatars.githubusercontent.com/u/885355?v=3","gravatar_id":"","url":"https://api.github.com/users/marghoob","html_url":"https://github.com/marghoob","followers_url":"https://api.github.com/users/marghoob/followers","following_url":"https://api.github.com/users/marghoob/following{/other_user}","gists_url":"https://api.github.com/users/marghoob/gists{/gist_id}","starred_url":"https://api.github.com/users/marghoob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marghoob/subscriptions","organizations_url":"https://api.github.com/users/marghoob/orgs","repos_url":"https://api.github.com/users/marghoob/repos","events_url":"https://api.github.com/users/marghoob/events{/privacy}","received_events_url":"https://api.github.com/users/marghoob/received_events","type":"User","site_admin":false},"assignees":[{"login":"marghoob","id":885355,"avatar_url":"https://avatars.githubusercontent.com/u/885355?v=3","gravatar_id":"","url":"https://api.github.com/users/marghoob","html_url":"https://github.com/marghoob","followers_url":"https://api.github.com/users/marghoob/followers","following_url":"https://api.github.com/users/marghoob/following{/other_user}","gists_url":"https://api.github.com/users/marghoob/gists{/gist_id}","starred_url":"https://api.github.com/users/marghoob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marghoob/subscriptions","organizations_url":"https://api.github.com/users/marghoob/orgs","repos_url":"https://api.github.com/users/marghoob/repos","events_url":"https://api.github.com/users/marghoob/events{/privacy}","received_events_url":"https://api.github.com/users/marghoob/received_events","type":"User","site_admin":false}],"milestone":null,"commits_url":"https://api.github.com/repos/bioinform/varsim/pulls/56/commits","review_comments_url":"https://api.github.com/repos/bioinform/varsim/pulls/56/comments","review_comment_url":"https://api.github.com/repos/bioinform/varsim/pulls/comments{/number}","comments_url":"https://api.github.com/repos/bioinform/varsim/issues/56/comments","statuses_url":"https://api.github.com/repos/bioinform/varsim/statuses/e213871fd8eafd40420c23ace7f11f5fbb5ad5ed","head":{"label":"yunfeiguo:add_translocation_in_simulation","ref":"add_translocation_in_simulation","sha":"e213871fd8eafd40420c23ace7f11f5fbb5ad5ed","user":{"login":"yunfeiguo","id":7737294,"avatar_url":"https://avatars.githubusercontent.com/u/7737294?v=3","gravatar_id":"","url":"https://api.github.com/users/yunfeiguo","html_url":"https://github.com/yunfeiguo","followers_url":"https://api.github.com/users/yunfeiguo/followers","following_url":"https://api.github.com/users/yunfeiguo/following{/other_user}","gists_url":"https://api.github.com/users/yunfeiguo/gists{/gist_id}","starred_url":"https://api.github.com/users/yunfeiguo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yunfeiguo/subscriptions","organizations_url":"https://api.github.com/users/yunfeiguo/orgs","repos_url":"https://api.github.com/users/yunfeiguo/repos","events_url":"https://api.github.com/users/yunfeiguo/events{/privacy}","received_events_url":"https://api.github.com/users/yunfeiguo/received_events","type":"User","site_admin":false},"repo":{"id":68758538,"name":"varsim","full_name":"yunfeiguo/varsim","owner":{"login":"yunfeiguo","id":7737294,"avatar_url":"https://avatars.githubusercontent.com/u/7737294?v=3","gravatar_id":"","url":"https://api.github.com/users/yunfeiguo","html_url":"https://github.com/yunfeiguo","followers_url":"https://api.github.com/users/yunfeiguo/followers","following_url":"https://api.github.com/users/yunfeiguo/following{/other_user}","gists_url":"https://api.github.com/users/yunfeiguo/gists{/gist_id}","starred_url":"https://api.github.com/users/yunfeiguo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yunfeiguo/subscriptions","organizations_url":"https://api.github.com/users/yunfeiguo/orgs","repos_url":"https://api.github.com/users/yunfeiguo/repos","events_url":"https://api.github.com/users/yunfeiguo/events{/privacy}","received_events_url":"https://api.github.com/users/yunfeiguo/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/yunfeiguo/varsim","description":"VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications","fork":true,"url":"https://api.github.com/repos/yunfeiguo/varsim","forks_url":"https://api.github.com/repos/yunfeiguo/varsim/forks","keys_url":"https://api.github.com/repos/yunfeiguo/varsim/keys{/key_id}","collaborators_url":"https://api.github.com/repos/yunfeiguo/varsim/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/yunfeiguo/varsim/teams","hooks_url":"https://api.github.com/repos/yunfeiguo/varsim/hooks","issue_events_url":"https://api.github.com/repos/yunfeiguo/varsim/issues/events{/number}","events_url":"https://api.github.com/repos/yunfeiguo/varsim/events","assignees_url":"https://api.github.com/repos/yunfeiguo/varsim/assignees{/user}","branches_url":"https://api.github.com/repos/yunfeiguo/varsim/branches{/branch}","tags_url":"https://api.github.com/repos/yunfeiguo/varsim/tags","blobs_url":"https://api.github.com/repos/yunfeiguo/varsim/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/yunfeiguo/varsim/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/yunfeiguo/varsim/git/refs{/sha}","trees_url":"https://api.github.com/repos/yunfeiguo/varsim/git/trees{/sha}","statuses_url":"https://api.github.com/repos/yunfeiguo/varsim/statuses/{sha}","languages_url":"https://api.github.com/repos/yunfeiguo/varsim/languages","stargazers_url":"https://api.github.com/repos/yunfeiguo/varsim/stargazers","contributors_url":"https://api.github.com/repos/yunfeiguo/varsim/contributors","subscribers_url":"https://api.github.com/repos/yunfeiguo/varsim/subscribers","subscription_url":"https://api.github.com/repos/yunfeiguo/varsim/subscription","commits_url":"https://api.github.com/repos/yunfeiguo/varsim/commits{/sha}","git_commits_url":"https://api.github.com/repos/yunfeiguo/varsim/git/commits{/sha}","comments_url":"https://api.github.com/repos/yunfeiguo/varsim/comments{/number}","issue_comment_url":"https://api.github.com/repos/yunfeiguo/varsim/issues/comments{/number}","contents_url":"https://api.github.com/repos/yunfeiguo/varsim/contents/{+path}","compare_url":"https://api.github.com/repos/yunfeiguo/varsim/compare/{base}...{head}","merges_url":"https://api.github.com/repos/yunfeiguo/varsim/merges","archive_url":"https://api.github.com/repos/yunfeiguo/varsim/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/yunfeiguo/varsim/downloads","issues_url":"https://api.github.com/repos/yunfeiguo/varsim/issues{/number}","pulls_url":"https://api.github.com/repos/yunfeiguo/varsim/pulls{/number}","milestones_url":"https://api.github.com/repos/yunfeiguo/varsim/milestones{/number}","notifications_url":"https://api.github.com/repos/yunfeiguo/varsim/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/yunfeiguo/varsim/labels{/name}","releases_url":"https://api.github.com/repos/yunfeiguo/varsim/releases{/id}","deployments_url":"https://api.github.com/repos/yunfeiguo/varsim/deployments","created_at":"2016-09-20T22:29:38Z","updated_at":"2016-09-20T22:29:40Z","pushed_at":"2016-10-13T16:13:17Z","git_url":"git://github.com/yunfeiguo/varsim.git","ssh_url":"git@github.com:yunfeiguo/varsim.git","clone_url":"https://github.com/yunfeiguo/varsim.git","svn_url":"https://github.com/yunfeiguo/varsim","homepage":"http://bioinform.github.io/varsim/","size":8011,"stargazers_count":0,"watchers_count":0,"language":"Java","has_issues":false,"has_downloads":true,"has_wiki":false,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"bioinform:master","ref":"master","sha":"ac0311d5c12806d974443cfea72cfcdb3704693f","user":{"login":"bioinform","id":7563198,"avatar_url":"https://avatars.githubusercontent.com/u/7563198?v=3","gravatar_id":"","url":"https://api.github.com/users/bioinform","html_url":"https://github.com/bioinform","followers_url":"https://api.github.com/users/bioinform/followers","following_url":"https://api.github.com/users/bioinform/following{/other_user}","gists_url":"https://api.github.com/users/bioinform/gists{/gist_id}","starred_url":"https://api.github.com/users/bioinform/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bioinform/subscriptions","organizations_url":"https://api.github.com/users/bioinform/orgs","repos_url":"https://api.github.com/users/bioinform/repos","events_url":"https://api.github.com/users/bioinform/events{/privacy}","received_events_url":"https://api.github.com/users/bioinform/received_events","type":"Organization","site_admin":false},"repo":{"id":19718418,"name":"varsim","full_name":"bioinform/varsim","owner":{"login":"bioinform","id":7563198,"avatar_url":"https://avatars.githubusercontent.com/u/7563198?v=3","gravatar_id":"","url":"https://api.github.com/users/bioinform","html_url":"https://github.com/bioinform","followers_url":"https://api.github.com/users/bioinform/followers","following_url":"https://api.github.com/users/bioinform/following{/other_user}","gists_url":"https://api.github.com/users/bioinform/gists{/gist_id}","starred_url":"https://api.github.com/users/bioinform/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bioinform/subscriptions","organizations_url":"https://api.github.com/users/bioinform/orgs","repos_url":"https://api.github.com/users/bioinform/repos","events_url":"https://api.github.com/users/bioinform/events{/privacy}","received_events_url":"https://api.github.com/users/bioinform/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/bioinform/varsim","description":"VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications","fork":false,"url":"https://api.github.com/repos/bioinform/varsim","forks_url":"https://api.github.com/repos/bioinform/varsim/forks","keys_url":"https://api.github.com/repos/bioinform/varsim/keys{/key_id}","collaborators_url":"https://api.github.com/repos/bioinform/varsim/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/bioinform/varsim/teams","hooks_url":"https://api.github.com/repos/bioinform/varsim/hooks","issue_events_url":"https://api.github.com/repos/bioinform/varsim/issues/events{/number}","events_url":"https://api.github.com/repos/bioinform/varsim/events","assignees_url":"https://api.github.com/repos/bioinform/varsim/assignees{/user}","branches_url":"https://api.github.com/repos/bioinform/varsim/branches{/branch}","tags_url":"https://api.github.com/repos/bioinform/varsim/tags","blobs_url":"https://api.github.com/repos/bioinform/varsim/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/bioinform/varsim/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/bioinform/varsim/git/refs{/sha}","trees_url":"https://api.github.com/repos/bioinform/varsim/git/trees{/sha}","statuses_url":"https://api.github.com/repos/bioinform/varsim/statuses/{sha}","languages_url":"https://api.github.com/repos/bioinform/varsim/languages","stargazers_url":"https://api.github.com/repos/bioinform/varsim/stargazers","contributors_url":"https://api.github.com/repos/bioinform/varsim/contributors","subscribers_url":"https://api.github.com/repos/bioinform/varsim/subscribers","subscription_url":"https://api.github.com/repos/bioinform/varsim/subscription","commits_url":"https://api.github.com/repos/bioinform/varsim/commits{/sha}","git_commits_url":"https://api.github.com/repos/bioinform/varsim/git/commits{/sha}","comments_url":"https://api.github.com/repos/bioinform/varsim/comments{/number}","issue_comment_url":"https://api.github.com/repos/bioinform/varsim/issues/comments{/number}","contents_url":"https://api.github.com/repos/bioinform/varsim/contents/{+path}","compare_url":"https://api.github.com/repos/bioinform/varsim/compare/{base}...{head}","merges_url":"https://api.github.com/repos/bioinform/varsim/merges","archive_url":"https://api.github.com/repos/bioinform/varsim/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/bioinform/varsim/downloads","issues_url":"https://api.github.com/repos/bioinform/varsim/issues{/number}","pulls_url":"https://api.github.com/repos/bioinform/varsim/pulls{/number}","milestones_url":"https://api.github.com/repos/bioinform/varsim/milestones{/number}","notifications_url":"https://api.github.com/repos/bioinform/varsim/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/bioinform/varsim/labels{/name}","releases_url":"https://api.github.com/repos/bioinform/varsim/releases{/id}","deployments_url":"https://api.github.com/repos/bioinform/varsim/deployments","created_at":"2014-05-12T22:59:15Z","updated_at":"2016-09-23T21:41:28Z","pushed_at":"2016-10-13T16:45:55Z","git_url":"git://github.com/bioinform/varsim.git","ssh_url":"git@github.com:bioinform/varsim.git","clone_url":"https://github.com/bioinform/varsim.git","svn_url":"https://github.com/bioinform/varsim","homepage":"http://bioinform.github.io/varsim/","size":7895,"stargazers_count":27,"watchers_count":27,"language":"Java","has_issues":true,"has_downloads":true,"has_wiki":false,"has_pages":true,"forks_count":8,"mirror_url":null,"open_issues_count":8,"forks":8,"open_issues":8,"watchers":27,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/bioinform/varsim/pulls/56"},"html":{"href":"https://github.com/bioinform/varsim/pull/56"},"issue":{"href":"https://api.github.com/repos/bioinform/varsim/issues/56"},"comments":{"href":"https://api.github.com/repos/bioinform/varsim/issues/56/comments"},"review_comments":{"href":"https://api.github.com/repos/bioinform/varsim/pulls/56/comments"},"review_comment":{"href":"https://api.github.com/repos/bioinform/varsim/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/bioinform/varsim/pulls/56/commits"},"statuses":{"href":"https://api.github.com/repos/bioinform/varsim/statuses/e213871fd8eafd40420c23ace7f11f5fbb5ad5ed"}},"merged":true,"mergeable":null,"mergeable_state":"unknown","merged_by":{"login":"marghoob","id":885355,"avatar_url":"https://avatars.githubusercontent.com/u/885355?v=3","gravatar_id":"","url":"https://api.github.com/users/marghoob","html_url":"https://github.com/marghoob","followers_url":"https://api.github.com/users/marghoob/followers","following_url":"https://api.github.com/users/marghoob/following{/other_user}","gists_url":"https://api.github.com/users/marghoob/gists{/gist_id}","starred_url":"https://api.github.com/users/marghoob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marghoob/subscriptions","organizations_url":"https://api.github.com/users/marghoob/orgs","repos_url":"https://api.github.com/users/marghoob/repos","events_url":"https://api.github.com/users/marghoob/events{/privacy}","received_events_url":"https://api.github.com/users/marghoob/received_events","type":"User","site_admin":false},"comments":4,"review_comments":11,"commits":33,"additions":2936,"deletions":376,"changed_files":174}}
{"actor":{"display_login":"marghoob"}}