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My goal in code review is to point out other possibilities (even pure opinion) for you to choose from *if you want* i.e. to be an extra set of eyes but not in the sense of \"Big Brother is watching.\"","created_at":"2016-02-28T04:32:42Z","updated_at":"2016-02-28T04:32:42Z","html_url":"https://github.com/broadinstitute/gatk-protected/pull/376#discussion_r54344067","pull_request_url":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/376","_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/comments/54344067"},"html":{"href":"https://github.com/broadinstitute/gatk-protected/pull/376#discussion_r54344067"},"pull_request":{"href":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/376"}}},"pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/376","id":60919882,"html_url":"https://github.com/broadinstitute/gatk-protected/pull/376","diff_url":"https://github.com/broadinstitute/gatk-protected/pull/376.diff","patch_url":"https://github.com/broadinstitute/gatk-protected/pull/376.patch","issue_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/376","number":376,"state":"open","locked":false,"title":"Adds an argument to FilterTargets so that the user can explicitly ind…","user":{"login":"vruano","id":791104,"avatar_url":"https://avatars.githubusercontent.com/u/791104?v=3","gravatar_id":"","url":"https://api.github.com/users/vruano","html_url":"https://github.com/vruano","followers_url":"https://api.github.com/users/vruano/followers","following_url":"https://api.github.com/users/vruano/following{/other_user}","gists_url":"https://api.github.com/users/vruano/gists{/gist_id}","starred_url":"https://api.github.com/users/vruano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vruano/subscriptions","organizations_url":"https://api.github.com/users/vruano/orgs","repos_url":"https://api.github.com/users/vruano/repos","events_url":"https://api.github.com/users/vruano/events{/privacy}","received_events_url":"https://api.github.com/users/vruano/received_events","type":"User","site_admin":false},"body":"…icate exclusion intervals.\r\n\r\nAll targets that overlap any of the intervals indicated (even if it is just by 1bp) will be excluded.","created_at":"2016-02-26T23:21:14Z","updated_at":"2016-02-28T04:32:42Z","closed_at":null,"merged_at":null,"merge_commit_sha":"c9677a16b6a63b19e04dad91e0ca63750ec10220","assignee":{"login":"vruano","id":791104,"avatar_url":"https://avatars.githubusercontent.com/u/791104?v=3","gravatar_id":"","url":"https://api.github.com/users/vruano","html_url":"https://github.com/vruano","followers_url":"https://api.github.com/users/vruano/followers","following_url":"https://api.github.com/users/vruano/following{/other_user}","gists_url":"https://api.github.com/users/vruano/gists{/gist_id}","starred_url":"https://api.github.com/users/vruano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vruano/subscriptions","organizations_url":"https://api.github.com/users/vruano/orgs","repos_url":"https://api.github.com/users/vruano/repos","events_url":"https://api.github.com/users/vruano/events{/privacy}","received_events_url":"https://api.github.com/users/vruano/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/4","html_url":"https://github.com/broadinstitute/gatk-protected/milestones/Germline-CNV-Calling","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/4/labels","id":1355796,"number":4,"title":"Germline-CNV-Calling","description":"Implement CNV calling in germline samples. 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