{"action":"created","issue":{"url":"https://api.github.com/repos/atks/vt/issues/52","repository_url":"https://api.github.com/repos/atks/vt","labels_url":"https://api.github.com/repos/atks/vt/issues/52/labels{/name}","comments_url":"https://api.github.com/repos/atks/vt/issues/52/comments","events_url":"https://api.github.com/repos/atks/vt/issues/52/events","html_url":"https://github.com/atks/vt/issues/52","id":169618463,"number":52,"title":"Optional log file","user":{"login":"AlistairNWard","id":523111,"avatar_url":"https://avatars.githubusercontent.com/u/523111?v=3","gravatar_id":"","url":"https://api.github.com/users/AlistairNWard","html_url":"https://github.com/AlistairNWard","followers_url":"https://api.github.com/users/AlistairNWard/followers","following_url":"https://api.github.com/users/AlistairNWard/following{/other_user}","gists_url":"https://api.github.com/users/AlistairNWard/gists{/gist_id}","starred_url":"https://api.github.com/users/AlistairNWard/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AlistairNWard/subscriptions","organizations_url":"https://api.github.com/users/AlistairNWard/orgs","repos_url":"https://api.github.com/users/AlistairNWard/repos","events_url":"https://api.github.com/users/AlistairNWard/events{/privacy}","received_events_url":"https://api.github.com/users/AlistairNWard/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2016-08-05T14:22:04Z","updated_at":"2016-08-05T16:03:31Z","closed_at":null,"body":"Would it be possible to (optionally) output all log information to a defined file? We currently catch everything going to stderr and process to identify potential errors in our pipeline. Current implementation means we always have content in stderr and it is almost never an error. What would be great would be a --log <file> option for all vt tools, so that log information goes to that file, errors go to stderr and the vcf/bcf goes to stdout."},"comment":{"url":"https://api.github.com/repos/atks/vt/issues/comments/237891139","html_url":"https://github.com/atks/vt/issues/52#issuecomment-237891139","issue_url":"https://api.github.com/repos/atks/vt/issues/52","id":237891139,"user":{"login":"atks","id":3708476,"avatar_url":"https://avatars.githubusercontent.com/u/3708476?v=3","gravatar_id":"","url":"https://api.github.com/users/atks","html_url":"https://github.com/atks","followers_url":"https://api.github.com/users/atks/followers","following_url":"https://api.github.com/users/atks/following{/other_user}","gists_url":"https://api.github.com/users/atks/gists{/gist_id}","starred_url":"https://api.github.com/users/atks/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/atks/subscriptions","organizations_url":"https://api.github.com/users/atks/orgs","repos_url":"https://api.github.com/users/atks/repos","events_url":"https://api.github.com/users/atks/events{/privacy}","received_events_url":"https://api.github.com/users/atks/received_events","type":"User","site_admin":false},"created_at":"2016-08-05T16:03:31Z","updated_at":"2016-08-05T16:03:31Z","body":"Can you let me know which tools do you use in vt?  I should be able to implement for those few first."}}
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