{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/650","repository_url":"https://api.github.com/repos/broadinstitute/gatk-protected","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/650/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/650/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/650/events","html_url":"https://github.com/broadinstitute/gatk-protected/pull/650","id":173301761,"number":650,"title":"Adding info and changes to cromwell json template.","user":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"assignees":[{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/8","html_url":"https://github.com/broadinstitute/gatk-protected/milestones/CNV%20Tools%20alpha-3%20release","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/8/labels","id":1618160,"number":8,"title":"CNV Tools alpha-3 release","description":"GOALS:\r\n\r\n#### CNV/ACNV improvements\r\n- [ ] Probabilistic-PCA coverage model\r\n- [x] HMM segmentation of copy ratio and allele fraction\r\n- [ ] Germline CNV tool (probabilistic-PCA + HMM) with evaluation\r\n- [x] Allelic panel of normals for ACNV\r\n\r\n#### ACNV publication\r\n- [ ] Exome and WGS evaluations\r\n- [ ] Final draft ready for submission\r\n\r\n#### WGS\r\n- [ ] Evaluation of GATK CNV (including GC correction)\r\n\r\n#### Other\r\n- [x] WDL scripts for CNV/ACNV workflows (CreatePoN, Case)\r\n- [ ] Automated testing of workflows\r\n- [ ] Infrastructure for automated evaluations\r\n- [ ] Automated GATK CNV CRSP evaluation\r\n- [ ] Prototype tool for purity/ploidy inference","creator":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"open_issues":39,"closed_issues":53,"state":"open","created_at":"2016-03-02T15:52:34Z","updated_at":"2016-08-25T20:28:29Z","due_on":"2016-09-26T00:00:00Z","closed_at":null},"comments":1,"created_at":"2016-08-25T20:28:29Z","updated_at":"2016-08-30T16:25:50Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/650","html_url":"https://github.com/broadinstitute/gatk-protected/pull/650","diff_url":"https://github.com/broadinstitute/gatk-protected/pull/650.diff","patch_url":"https://github.com/broadinstitute/gatk-protected/pull/650.patch"},"body":"Made templates more like python templates.\r\n\r\nCloses #603 "},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/comments/243497086","html_url":"https://github.com/broadinstitute/gatk-protected/pull/650#issuecomment-243497086","issue_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/650","id":243497086,"user":{"login":"samuelklee","id":11076296,"avatar_url":"https://avatars.githubusercontent.com/u/11076296?v=3","gravatar_id":"","url":"https://api.github.com/users/samuelklee","html_url":"https://github.com/samuelklee","followers_url":"https://api.github.com/users/samuelklee/followers","following_url":"https://api.github.com/users/samuelklee/following{/other_user}","gists_url":"https://api.github.com/users/samuelklee/gists{/gist_id}","starred_url":"https://api.github.com/users/samuelklee/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/samuelklee/subscriptions","organizations_url":"https://api.github.com/users/samuelklee/orgs","repos_url":"https://api.github.com/users/samuelklee/repos","events_url":"https://api.github.com/users/samuelklee/events{/privacy}","received_events_url":"https://api.github.com/users/samuelklee/received_events","type":"User","site_admin":false},"created_at":"2016-08-30T16:25:50Z","updated_at":"2016-08-30T16:25:50Z","body":"Just some style/formatting issues.  Thanks for putting this together, back to you @LeeTL1220 !"}}
{"actor":{"display_login":"samuelklee"}}