{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/1088","repository_url":"https://api.github.com/repos/galaxyproject/tools-iuc","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/1088/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/1088/comments","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/1088/events","html_url":"https://github.com/galaxyproject/tools-iuc/pull/1088","id":197023750,"number":1088,"title":"Add wrapper for SPAdes.","user":{"login":"davebx","id":1497000,"avatar_url":"https://avatars.githubusercontent.com/u/1497000?v=3","gravatar_id":"","url":"https://api.github.com/users/davebx","html_url":"https://github.com/davebx","followers_url":"https://api.github.com/users/davebx/followers","following_url":"https://api.github.com/users/davebx/following{/other_user}","gists_url":"https://api.github.com/users/davebx/gists{/gist_id}","starred_url":"https://api.github.com/users/davebx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davebx/subscriptions","organizations_url":"https://api.github.com/users/davebx/orgs","repos_url":"https://api.github.com/users/davebx/repos","events_url":"https://api.github.com/users/davebx/events{/privacy}","received_events_url":"https://api.github.com/users/davebx/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-12-21T20:19:44Z","updated_at":"2016-12-21T20:28:37Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/1088","html_url":"https://github.com/galaxyproject/tools-iuc/pull/1088","diff_url":"https://github.com/galaxyproject/tools-iuc/pull/1088.diff","patch_url":"https://github.com/galaxyproject/tools-iuc/pull/1088.patch"},"body":"Based on @Takadonet's SPAdes wrapper, with some changes:\r\n\r\n- Modified the XML to conform to the syntax I prefer.\r\n- Removed tool_dependencies.xml, since 3.9.0 is available in bioconda\r\n- Removed wrapper script. If the stats are important, I can add a sed/awk postprocessing command to generate them.\r\n\r\nI wasn't able to make the tests pass with smaller datasets, if anyone has <= 100kB fastq files that run correctly in spades, I'm happy to use them."},"comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/268630615","html_url":"https://github.com/galaxyproject/tools-iuc/pull/1088#issuecomment-268630615","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/1088","id":268630615,"user":{"login":"nsoranzo","id":4924623,"avatar_url":"https://avatars.githubusercontent.com/u/4924623?v=3","gravatar_id":"","url":"https://api.github.com/users/nsoranzo","html_url":"https://github.com/nsoranzo","followers_url":"https://api.github.com/users/nsoranzo/followers","following_url":"https://api.github.com/users/nsoranzo/following{/other_user}","gists_url":"https://api.github.com/users/nsoranzo/gists{/gist_id}","starred_url":"https://api.github.com/users/nsoranzo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nsoranzo/subscriptions","organizations_url":"https://api.github.com/users/nsoranzo/orgs","repos_url":"https://api.github.com/users/nsoranzo/repos","events_url":"https://api.github.com/users/nsoranzo/events{/privacy}","received_events_url":"https://api.github.com/users/nsoranzo/received_events","type":"User","site_admin":false},"created_at":"2016-12-21T20:28:37Z","updated_at":"2016-12-21T20:28:37Z","body":"Fantastic, thanks @davebx and @Takadonet!"}}
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