{"action":"created","issue":{"url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py/issues/271","repository_url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py","labels_url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py/issues/271/labels{/name}","comments_url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py/issues/271/comments","events_url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py/issues/271/events","html_url":"https://github.com/ReactionMechanismGenerator/RMG-Py/issues/271","id":39455931,"number":271,"title":"Error restarting job with solvation","user":{"login":"bslakman","id":2792693,"avatar_url":"https://avatars.githubusercontent.com/u/2792693?v=3","gravatar_id":"","url":"https://api.github.com/users/bslakman","html_url":"https://github.com/bslakman","followers_url":"https://api.github.com/users/bslakman/followers","following_url":"https://api.github.com/users/bslakman/following{/other_user}","gists_url":"https://api.github.com/users/bslakman/gists{/gist_id}","starred_url":"https://api.github.com/users/bslakman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bslakman/subscriptions","organizations_url":"https://api.github.com/users/bslakman/orgs","repos_url":"https://api.github.com/users/bslakman/repos","events_url":"https://api.github.com/users/bslakman/events{/privacy}","received_events_url":"https://api.github.com/users/bslakman/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2014-08-04T20:08:56Z","updated_at":"2016-04-12T15:44:27Z","closed_at":"2016-04-12T15:44:27Z","body":"After my computer restarted, I tried to restart the lipid peroxidation example I'd be running with solvation on and got the following error: \r\n\r\n```python\r\nLoading previous restart file...\r\nTraceback (most recent call last):\r\n  File \"rmg.py\", line 147, in <module>\r\n    rmg.execute(args)\r\n  File \"/Users/belinda/Code/RMG-Py/rmgpy/rmg/main.py\", line 385, in execute\r\n    self.initialize(args)\r\n  File \"/Users/belinda/Code/RMG-Py/rmgpy/rmg/main.py\", line 338, in initialize\r\n    self.loadRestartFile(os.path.join(self.outputDirectory,'restart.pkl'))\r\n  File \"/Users/belinda/Code/RMG-Py/rmgpy/rmg/main.py\", line 642, in loadRestartFile\r\n    self.reactionModel = cPickle.load(f)\r\n  File \"reaction.py\", line 117, in rmgpy.reaction.Reaction.__init__ (build/pyrex/rmgpy/reaction.c:3973)\r\nAttributeError: (\"'rmgpy.reaction.Reaction' object has no attribute '__k_effective_cache'\", <type 'rmgpy.reaction.Reaction'>, (-1, '', [<Entry index=-1 label=\"RJ_R_Y\">], [<Entry index=1 label=\"R_R\">, <Entry index=2 label=\"YJ\">], None, True, None, False, 1, None))\r\n```\r\n\r\nI'm looking into it but let me know if anyone has had similar errors"},"comment":{"url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py/issues/comments/208969751","html_url":"https://github.com/ReactionMechanismGenerator/RMG-Py/issues/271#issuecomment-208969751","issue_url":"https://api.github.com/repos/ReactionMechanismGenerator/RMG-Py/issues/271","id":208969751,"user":{"login":"bslakman","id":2792693,"avatar_url":"https://avatars.githubusercontent.com/u/2792693?v=3","gravatar_id":"","url":"https://api.github.com/users/bslakman","html_url":"https://github.com/bslakman","followers_url":"https://api.github.com/users/bslakman/followers","following_url":"https://api.github.com/users/bslakman/following{/other_user}","gists_url":"https://api.github.com/users/bslakman/gists{/gist_id}","starred_url":"https://api.github.com/users/bslakman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bslakman/subscriptions","organizations_url":"https://api.github.com/users/bslakman/orgs","repos_url":"https://api.github.com/users/bslakman/repos","events_url":"https://api.github.com/users/bslakman/events{/privacy}","received_events_url":"https://api.github.com/users/bslakman/received_events","type":"User","site_admin":false},"created_at":"2016-04-12T15:44:27Z","updated_at":"2016-04-12T15:44:27Z","body":"Closing this now, as Reaction().k_effective_cache is no longer private, and we can pickle/unpickle a liquid phase reaction. (#633)\r\nThere is still an issue with restart, however; will open an issue or add to existing ones."}}