{"action":"closed","issue":{"url":"https://api.github.com/repos/Mouse-Imaging-Centre/pydpiper/issues/226","repository_url":"https://api.github.com/repos/Mouse-Imaging-Centre/pydpiper","labels_url":"https://api.github.com/repos/Mouse-Imaging-Centre/pydpiper/issues/226/labels{/name}","comments_url":"https://api.github.com/repos/Mouse-Imaging-Centre/pydpiper/issues/226/comments","events_url":"https://api.github.com/repos/Mouse-Imaging-Centre/pydpiper/issues/226/events","html_url":"https://github.com/Mouse-Imaging-Centre/pydpiper/issues/226","id":113454638,"number":226,"title":"Default MAGeT protocol filenes of SciNet don't exist","user":{"login":"gdevenyi","id":3001850,"avatar_url":"https://avatars.githubusercontent.com/u/3001850?v=3","gravatar_id":"","url":"https://api.github.com/users/gdevenyi","html_url":"https://github.com/gdevenyi","followers_url":"https://api.github.com/users/gdevenyi/followers","following_url":"https://api.github.com/users/gdevenyi/following{/other_user}","gists_url":"https://api.github.com/users/gdevenyi/gists{/gist_id}","starred_url":"https://api.github.com/users/gdevenyi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gdevenyi/subscriptions","organizations_url":"https://api.github.com/users/gdevenyi/orgs","repos_url":"https://api.github.com/users/gdevenyi/repos","events_url":"https://api.github.com/users/gdevenyi/events{/privacy}","received_events_url":"https://api.github.com/users/gdevenyi/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2015-10-26T21:25:27Z","updated_at":"2016-11-03T19:41:09Z","closed_at":"2016-11-03T19:41:09Z","body":"From the help:\n\n```\n  --lsq12-protocol LSQ12_PROTOCOL\n                        Can optionally specify a registration protocol that is\n                        different from defaults. Parameters must be specified\n                        as in the following example: applications_testing/test\n                        _data/minctracc_example_linear_protocol.csv [Default =\n                        /projects/mice/share/arch/linux-3_2_0-36-generic-\n                        x86_64-eglibc-2_15/src/pydpiper/applications_testing/t\n                        est_data/default_linear_MAGeT_prot.csv].\n  --nlin-protocol NLIN_PROTOCOL\n                        Can optionally specify a registration protocol that is\n                        different from defaults. Parameters must be specified\n                        as in either or the following examples: applications_t\n                        esting/test_data/minctracc_example_nlin_protocol.csv a\n                        pplications_testing/test_data/mincANTS_example_nlin_pr\n                        otocol.csv [Default = /projects/mice/share/arch/linux-\n                        3_2_0-36-generic-x86_64-eglibc-2_15/src/pydpiper/appli\n                        cations_testing/test_data/default_nlin_MAGeT_minctracc\n                        _prot.csv]\n```\n"}}
{"actor":{"display_login":"mcvaneede"}}