{"action":"reopened","issue":{"url":"https://api.github.com/repos/marbl/canu/issues/274","repository_url":"https://api.github.com/repos/marbl/canu","labels_url":"https://api.github.com/repos/marbl/canu/issues/274/labels{/name}","comments_url":"https://api.github.com/repos/marbl/canu/issues/274/comments","events_url":"https://api.github.com/repos/marbl/canu/issues/274/events","html_url":"https://github.com/marbl/canu/issues/274","id":183343554,"number":274,"title":"Canu ovlStore : Failed with signal SEGV (11) ","user":{"login":"shameem356","id":5334369,"avatar_url":"https://avatars.githubusercontent.com/u/5334369?v=3","gravatar_id":"","url":"https://api.github.com/users/shameem356","html_url":"https://github.com/shameem356","followers_url":"https://api.github.com/users/shameem356/followers","following_url":"https://api.github.com/users/shameem356/following{/other_user}","gists_url":"https://api.github.com/users/shameem356/gists{/gist_id}","starred_url":"https://api.github.com/users/shameem356/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shameem356/subscriptions","organizations_url":"https://api.github.com/users/shameem356/orgs","repos_url":"https://api.github.com/users/shameem356/repos","events_url":"https://api.github.com/users/shameem356/events{/privacy}","received_events_url":"https://api.github.com/users/shameem356/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-10-17T07:25:11Z","updated_at":"2016-10-19T14:12:08Z","closed_at":null,"body":"Hello ,\r\nWe are trying to do data 'correction'  and it failed at '**ovlStore**'  steps.We have tried two times and both attempt failed with same reason.Below is the error log.\r\n\r\nERROR: Failed with signal SEGV (11)\r\nFailed with 'Segmentation fault'\r\nBacktrace (mangled):\r\n/data/labs/genomics_lab/shared/shameem/apps/canu-1.0/Linux-amd64/bin/ovStoreStats(_Z17AS_UTL_catchCrashiP7siginfoPv+0x27)[0x41d617]\r\n/lib64/libpthread.so.0[0x36c460f790]\r\n/data/labs/genomics_lab/shared/shameem/apps/canu-1.0/Linux-amd64/bin/ovStoreStats[0x40540a]\r\n/lib64/libc.so.6(__libc_start_main+0xfd)[0x36c421ed5d]\r\n/data/labs/genomics_lab/shared/shameem/apps/canu-1.0/Linux-amd64/bin/ovStoreStats[0x401a29]\r\nBacktrace (demangled):\r\n[0] /data/labs/genomics_lab/shared/shameem/apps/canu-1.0/Linux-amd64/bin/ovStoreStats::AS_UTL_catchCrash(int, siginfo*, void*) + 0x27  [0x41d617]\r\n[1] /lib64/libpthread.so.0() [0x36c460f790]\r\n[2] /data/labs/genomics_lab/shared/shameem/apps/canu-1.0/Linux-amd64/bin/ovStoreStats() [0x40540a]\r\n[3] /lib64/libc.so.6::(null) + 0xfd  [0x36c421ed5d]\r\n[4] /data/labs/genomics_lab/shared/shameem/apps/canu-1.0/Linux-amd64/bin/ovStoreStats() [0x401a29]\r\n\r\nHere is the parameter used for canu correction.\r\n\r\nuseGrid=0\r\nmaxThreads=60\r\nmaxMemory=300\r\ncorConcurrency=10\r\nutgovlConcurrency=10\r\nutgovlConcurrency=10\r\noeaConcurrency=10\r\novbConcurrency=10\r\novsConcurrency=10\r\nredConcurrency=10\r\ncormhapMemory=25\r\ncorovlMemory=25\r\nobtmhapMemory=25\r\nobtovlMemory=25\r\nutgmhapMemory=25\r\nutgovlMemory=25\r\noeaMemory=25\r\novbMemory=25\r\novsMemory=25\r\nredMemory=25\r\n\r\nPlease let us know how to solve this issue.\r\n"}}
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