{"action":"created","issue":{"url":"https://api.github.com/repos/greenelab/GCB535/issues/10","repository_url":"https://api.github.com/repos/greenelab/GCB535","labels_url":"https://api.github.com/repos/greenelab/GCB535/issues/10/labels{/name}","comments_url":"https://api.github.com/repos/greenelab/GCB535/issues/10/comments","events_url":"https://api.github.com/repos/greenelab/GCB535/issues/10/events","html_url":"https://github.com/greenelab/GCB535/issues/10","id":161192499,"number":10,"title":"Python Module 3","user":{"login":"cgreene","id":542643,"avatar_url":"https://avatars.githubusercontent.com/u/542643?v=3","gravatar_id":"","url":"https://api.github.com/users/cgreene","html_url":"https://github.com/cgreene","followers_url":"https://api.github.com/users/cgreene/followers","following_url":"https://api.github.com/users/cgreene/following{/other_user}","gists_url":"https://api.github.com/users/cgreene/gists{/gist_id}","starred_url":"https://api.github.com/users/cgreene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cgreene/subscriptions","organizations_url":"https://api.github.com/users/cgreene/orgs","repos_url":"https://api.github.com/users/cgreene/repos","events_url":"https://api.github.com/users/cgreene/events{/privacy}","received_events_url":"https://api.github.com/users/cgreene/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/greenelab/GCB535/milestones/1","html_url":"https://github.com/greenelab/GCB535/milestones/Wrap%20up%20changes%20to%20individual%20modules.","labels_url":"https://api.github.com/repos/greenelab/GCB535/milestones/1/labels","id":1838338,"number":1,"title":"Wrap up changes to individual modules.","description":"Individual modules are revised based on first time through the material.","creator":{"login":"cgreene","id":542643,"avatar_url":"https://avatars.githubusercontent.com/u/542643?v=3","gravatar_id":"","url":"https://api.github.com/users/cgreene","html_url":"https://github.com/cgreene","followers_url":"https://api.github.com/users/cgreene/followers","following_url":"https://api.github.com/users/cgreene/following{/other_user}","gists_url":"https://api.github.com/users/cgreene/gists{/gist_id}","starred_url":"https://api.github.com/users/cgreene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cgreene/subscriptions","organizations_url":"https://api.github.com/users/cgreene/orgs","repos_url":"https://api.github.com/users/cgreene/repos","events_url":"https://api.github.com/users/cgreene/events{/privacy}","received_events_url":"https://api.github.com/users/cgreene/received_events","type":"User","site_admin":false},"open_issues":12,"closed_issues":9,"state":"open","created_at":"2016-06-20T14:45:39Z","updated_at":"2016-09-21T22:13:21Z","due_on":"2016-06-30T04:00:00Z","closed_at":null},"comments":1,"created_at":"2016-06-20T13:16:32Z","updated_at":"2016-09-21T22:13:21Z","closed_at":"2016-09-21T22:13:20Z","body":"* Genes.txt not included in prelab folder but required\r\n* There was some issue with stripping both “\\r” and “\\n”. This was described in the prelab, but the assignment only reminds them to strip the “\\n”. \r\n* 1C is ambiguous about inclusive/exclusive of of the stopping rule (ie. do we want them to stop and print when n=1024, or just before?)\r\n* Question A is slightly ambiguous if GC content was the sum of all bases across all sequences, then average; or calculate %gc for each sequence, then average. let’s make clear what we want exactly even though both are ‘right’\r\nfor homework part 2, if students print each letter of the sequence on its own line, the amount of file size that gets printed causes the ipynb to crash. Could address this by limiting the number of sequences?\r\n* In the first homework problem, it is not clear whether they are required to find the average length to get full credit or not.\r\n* In the second homework problem, some of the students wrote the reverse complement to an outfile and others didn’t. If you write to an outfile, the solution is simpler and doesn’t use much of what they should have learned, so in the future we should make it clear that they must print the reverse complement to the screen without using an intermediate file.\r\n"},"comment":{"url":"https://api.github.com/repos/greenelab/GCB535/issues/comments/248758518","html_url":"https://github.com/greenelab/GCB535/issues/10#issuecomment-248758518","issue_url":"https://api.github.com/repos/greenelab/GCB535/issues/10","id":248758518,"user":{"login":"alexamlie","id":554415,"avatar_url":"https://avatars.githubusercontent.com/u/554415?v=3","gravatar_id":"","url":"https://api.github.com/users/alexamlie","html_url":"https://github.com/alexamlie","followers_url":"https://api.github.com/users/alexamlie/followers","following_url":"https://api.github.com/users/alexamlie/following{/other_user}","gists_url":"https://api.github.com/users/alexamlie/gists{/gist_id}","starred_url":"https://api.github.com/users/alexamlie/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexamlie/subscriptions","organizations_url":"https://api.github.com/users/alexamlie/orgs","repos_url":"https://api.github.com/users/alexamlie/repos","events_url":"https://api.github.com/users/alexamlie/events{/privacy}","received_events_url":"https://api.github.com/users/alexamlie/received_events","type":"User","site_admin":false},"created_at":"2016-09-21T22:13:20Z","updated_at":"2016-09-21T22:13:20Z","body":"I addressed all these problems; decided to calculate %gc for each sequence and then average"}}
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