{"action":"created","issue":{"url":"https://api.github.com/repos/mfvalin/modeltools/issues/1","repository_url":"https://api.github.com/repos/mfvalin/modeltools","labels_url":"https://api.github.com/repos/mfvalin/modeltools/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/mfvalin/modeltools/issues/1/comments","events_url":"https://api.github.com/repos/mfvalin/modeltools/issues/1/events","html_url":"https://github.com/mfvalin/modeltools/issues/1","id":136472518,"number":1,"title":"Issues when compiling atm.Abs","user":{"login":"guziy","id":900941,"avatar_url":"https://avatars.githubusercontent.com/u/900941?v=3","gravatar_id":"","url":"https://api.github.com/users/guziy","html_url":"https://github.com/guziy","followers_url":"https://api.github.com/users/guziy/followers","following_url":"https://api.github.com/users/guziy/following{/other_user}","gists_url":"https://api.github.com/users/guziy/gists{/gist_id}","starred_url":"https://api.github.com/users/guziy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/guziy/subscriptions","organizations_url":"https://api.github.com/users/guziy/orgs","repos_url":"https://api.github.com/users/guziy/repos","events_url":"https://api.github.com/users/guziy/events{/privacy}","received_events_url":"https://api.github.com/users/guziy/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-02-25T18:35:26Z","updated_at":"2016-02-26T03:04:01Z","closed_at":null,"body":"Hi:\r\n\r\nI am not sure if this is a real problem, but I am not able to compile test executables using the latest version of mgi_shm on guillimin. I would like to test it in simple conditions before upgrading the version used in the model:\r\n\r\n```\r\n$ make\r\ns.f90 -mpi -DMODEL -DATM f_mgi_test.F90 mgilib2.o -o atm.Abs\r\nUSING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules\r\nUSING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules\r\nCompiler Rules applied for Linux PGI version 11\r\nUSING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules\r\nUSING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules\r\nCompiler Rules applied for Linux PGI version 11\r\nf_mgi_test.F90:\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_reg_xrc_rcv_qp@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_close_xrc_domain@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_unreg_xrc_rcv_qp@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_open_xrc_domain@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_modify_xrc_rcv_qp@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_create_xrc_rcv_qp@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_create_xrc_srq@IBVERBS_1.1'\r\n/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_query_xrc_rcv_qp@IBVERBS_1.1'\r\nmake: *** [atm.Abs] Erreur 2\r\n```\r\n\r\n\r\nThanks\r\n"},"comment":{"url":"https://api.github.com/repos/mfvalin/modeltools/issues/comments/189088833","html_url":"https://github.com/mfvalin/modeltools/issues/1#issuecomment-189088833","issue_url":"https://api.github.com/repos/mfvalin/modeltools/issues/1","id":189088833,"user":{"login":"mfvalin","id":1645387,"avatar_url":"https://avatars.githubusercontent.com/u/1645387?v=3","gravatar_id":"","url":"https://api.github.com/users/mfvalin","html_url":"https://github.com/mfvalin","followers_url":"https://api.github.com/users/mfvalin/followers","following_url":"https://api.github.com/users/mfvalin/following{/other_user}","gists_url":"https://api.github.com/users/mfvalin/gists{/gist_id}","starred_url":"https://api.github.com/users/mfvalin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mfvalin/subscriptions","organizations_url":"https://api.github.com/users/mfvalin/orgs","repos_url":"https://api.github.com/users/mfvalin/repos","events_url":"https://api.github.com/users/mfvalin/events{/privacy}","received_events_url":"https://api.github.com/users/mfvalin/received_events","type":"User","site_admin":false},"created_at":"2016-02-26T03:04:01Z","updated_at":"2016-02-26T03:04:01Z","body":". s.ssmuse.dot dev/pgi-11-s\npermet un build (ca utilise openmpi du systeme)\nnos vieilles librairies openmpi sont probablement proches de la retraite :-)\n\n[valin@lg-1r17-n03 mgilib_shm]$ . s.ssmuse.dot dev/pgi-11-s\ns.ssmuse.dot dev/pgi-11-s\nGlobal tag values:\nBUNDLE PATH=@pgi-11-s\nUSING SHORTCUT\n/sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/ftn/pgi-11-s.sh\nBUNDLE PATH=@pgi-11-s\nUSING SHORTCUT\n/sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/ftn/openmpi-1.6.3.sh\nINFO: setting compiling architecture to 'Linux_x86-64/pgi11xx-s'\nINFO: module add pgi/11.7\nMODULEPATH=/software/CentOS-6/tools/Modules/3.2.9/modulefiles:/home/valin/modulefiles/:/home/armnssm/modulefiles/\nINFO: module add openmpi/1.4.3-pgi\nMODULEPATH=/software/CentOS-6/tools/Modules/3.2.9/modulefiles:/home/valin/modulefiles/:/home/armnssm/modulefiles/\nBUNDLE PATH=@pgi-11-s@base\nUSING cache for DOMAIN\n/sb/software/areas/armnssm/ssm-domains-base/tools/run-tools\nBUNDLE PATH=@pgi-11-s@base\nUSING cache for DOMAIN\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools\nBUNDLE PATH=@pgi-11-s@base\nUSING cache for DOMAIN\n/sb/software/areas/armnssm/ssm-domains-base/libs/librmn-dev\nBUNDLE PATH=@pgi-11-s@base\nUSING SHORTCUT\n/sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/model_data.sh\nBUNDLE PATH=@pgi-11-s@base\nUSING SHORTCUT\n/sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/rpn_templates.sh\n[valin@lg-1r17-n03 mgilib_shm]$ make clean\nrm -f mgilib2.o atm.Abs oce.Abs mgi_shm.Abs mpi.Abs\n[valin@lg-1r17-n03 mgilib_shm]$ make\ns.cc -I. -c -DWITHOUT_GOSSIP -O 2 mgilib2.c -o mgilib2.o\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules\nCompiler Rules applied for Linux PGI version 11\ns.f90 -mpi -DMODEL -DATM f_mgi_test.F90 mgilib2.o -o atm.Abs\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules\nCompiler Rules applied for Linux PGI version 11\nf_mgi_test.F90:\ns.f90 -mpi -DMODEL -DOCE f_mgi_test.F90 mgilib2.o -o oce.Abs\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules\nCompiler Rules applied for Linux PGI version 11\nf_mgi_test.F90:\ns.f90 f_mgi_test.F90 mgilib2.o -o test.Abs\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules\nCompiler Rules applied for Linux PGI version 11\nf_mgi_test.F90:\ns.f90 -mpi -DMODEL f_mgi_test.F90 mgilib2.o -o mpi.Abs\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules\nCompiler Rules applied for Linux PGI version 11\nf_mgi_test.F90:\ns.cc -I. -O 2 -Dmgi_shm=main mgi_shm.c -o mgi_shm.Abs\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules\nUSING:\n/sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules\nCompiler Rules applied for Linux PGI version 11\n\nMichel Valin\nanalyste de l'informatique\n\nOn 16-02-25 01:35 PM, Huziy Oleksandr (Sasha) wrote:\n>\n> Hi:\n>\n> I am not sure if this is a real problem, but I am not able to compile\n> test executables using the latest version of mgi_shm on guillimin. I\n> would like to test it in simple conditions before upgrading the\n> version used in the model:\n>\n> |$ make s.f90 -mpi -DMODEL -DATM f_mgi_test.F90 mgilib2.o -o atm.Abs\n> USING:\n> /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules\n> USING:\n> /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules\n> Compiler Rules applied for Linux PGI version 11 USING:\n> /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules\n> USING:\n> /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules\n> Compiler Rules applied for Linux PGI version 11 f_mgi_test.F90:\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_reg_xrc_rcv_qp@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_close_xrc_domain@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_unreg_xrc_rcv_qp@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_open_xrc_domain@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_modify_xrc_rcv_qp@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_create_xrc_rcv_qp@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_create_xrc_srq@IBVERBS_1.1'\n> /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so:\n> undefined reference to `ibv_query_xrc_rcv_qp@IBVERBS_1.1' make: ***\n> [atm.Abs] Erreur 2 |\n>\n> Thanks\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/mfvalin/modeltools/issues/1>.\n>\n\n"}}