{"action":"created","issue":{"url":"https://api.github.com/repos/griffithlab/pVAC-Seq/issues/143","repository_url":"https://api.github.com/repos/griffithlab/pVAC-Seq","labels_url":"https://api.github.com/repos/griffithlab/pVAC-Seq/issues/143/labels{/name}","comments_url":"https://api.github.com/repos/griffithlab/pVAC-Seq/issues/143/comments","events_url":"https://api.github.com/repos/griffithlab/pVAC-Seq/issues/143/events","html_url":"https://github.com/griffithlab/pVAC-Seq/issues/143","id":169250817,"number":143,"title":"Not getting any prediction data in files for frameshift variants","user":{"login":"strixeh","id":20443080,"avatar_url":"https://avatars.githubusercontent.com/u/20443080?v=3","gravatar_id":"","url":"https://api.github.com/users/strixeh","html_url":"https://github.com/strixeh","followers_url":"https://api.github.com/users/strixeh/followers","following_url":"https://api.github.com/users/strixeh/following{/other_user}","gists_url":"https://api.github.com/users/strixeh/gists{/gist_id}","starred_url":"https://api.github.com/users/strixeh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/strixeh/subscriptions","organizations_url":"https://api.github.com/users/strixeh/orgs","repos_url":"https://api.github.com/users/strixeh/repos","events_url":"https://api.github.com/users/strixeh/events{/privacy}","received_events_url":"https://api.github.com/users/strixeh/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-08-03T22:36:13Z","updated_at":"2016-08-05T15:50:49Z","closed_at":"2016-08-05T15:50:49Z","body":"Hi, \r\n\r\nI am running `pvacseq run pat4_4A_frameshift.vcf.anno pat4_4a_frameshift HLA-A*24:02 9 NetMHC /pat4_4a_frameshift -b 500 -s 100 --keep-tmp-files` \r\n\r\nbut my .combined.parsed.tsv and .filtered.tsv are empty. There are data in my temporary files however. Attached is folder with input vcf file, and all output files.\r\n\r\nThanks,\r\nNils\r\n\r\n[pat4_4a_frameshift.zip](https://github.com/griffithlab/pVAC-Seq/files/400449/pat4_4a_frameshift.zip)\r\n"},"comment":{"url":"https://api.github.com/repos/griffithlab/pVAC-Seq/issues/comments/237887623","html_url":"https://github.com/griffithlab/pVAC-Seq/issues/143#issuecomment-237887623","issue_url":"https://api.github.com/repos/griffithlab/pVAC-Seq/issues/143","id":237887623,"user":{"login":"susannasiebert","id":6617192,"avatar_url":"https://avatars.githubusercontent.com/u/6617192?v=3","gravatar_id":"","url":"https://api.github.com/users/susannasiebert","html_url":"https://github.com/susannasiebert","followers_url":"https://api.github.com/users/susannasiebert/followers","following_url":"https://api.github.com/users/susannasiebert/following{/other_user}","gists_url":"https://api.github.com/users/susannasiebert/gists{/gist_id}","starred_url":"https://api.github.com/users/susannasiebert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/susannasiebert/subscriptions","organizations_url":"https://api.github.com/users/susannasiebert/orgs","repos_url":"https://api.github.com/users/susannasiebert/repos","events_url":"https://api.github.com/users/susannasiebert/events{/privacy}","received_events_url":"https://api.github.com/users/susannasiebert/received_events","type":"User","site_admin":false},"created_at":"2016-08-05T15:50:49Z","updated_at":"2016-08-05T15:50:49Z","body":"I'm glad VEP worked correctly the second time around. I'll resolve this issue."}}
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