{"action":"created","issue":{"url":"https://api.github.com/repos/dereneaton/ipyrad/issues/189","repository_url":"https://api.github.com/repos/dereneaton/ipyrad","labels_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/189/labels{/name}","comments_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/189/comments","events_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/189/events","html_url":"https://github.com/dereneaton/ipyrad/issues/189","id":178057832,"number":189,"title":"Step 6 - ValueError(could not broadcast input array ...","user":{"login":"StuntsPT","id":1201571,"avatar_url":"https://avatars.githubusercontent.com/u/1201571?v=3","gravatar_id":"","url":"https://api.github.com/users/StuntsPT","html_url":"https://github.com/StuntsPT","followers_url":"https://api.github.com/users/StuntsPT/followers","following_url":"https://api.github.com/users/StuntsPT/following{/other_user}","gists_url":"https://api.github.com/users/StuntsPT/gists{/gist_id}","starred_url":"https://api.github.com/users/StuntsPT/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/StuntsPT/subscriptions","organizations_url":"https://api.github.com/users/StuntsPT/orgs","repos_url":"https://api.github.com/users/StuntsPT/repos","events_url":"https://api.github.com/users/StuntsPT/events{/privacy}","received_events_url":"https://api.github.com/users/StuntsPT/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":9,"created_at":"2016-09-20T13:21:45Z","updated_at":"2016-12-24T20:11:17Z","closed_at":null,"body":"Here is the error:\n\n``` python\n [####################] 100%  concatenating         | 0:00:09\n/home/francisco/Software/miniconda2/lib/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.\n  warnings.warn(\"Mean of empty slice.\", RuntimeWarning)\n/home/francisco/Software/miniconda2/lib/python2.7/site-packages/numpy/core/_methods.py:82: RuntimeWarning: Degrees of freedom <= 0 for slice\n  warnings.warn(\"Degrees of freedom <= 0 for slice\", RuntimeWarning)\n```\n\nI did not have debugging enabled but I can provide it in the next run if you think it might be useful.\n"},"comment":{"url":"https://api.github.com/repos/dereneaton/ipyrad/issues/comments/269098574","html_url":"https://github.com/dereneaton/ipyrad/issues/189#issuecomment-269098574","issue_url":"https://api.github.com/repos/dereneaton/ipyrad/issues/189","id":269098574,"user":{"login":"dereneaton","id":5395480,"avatar_url":"https://avatars.githubusercontent.com/u/5395480?v=3","gravatar_id":"","url":"https://api.github.com/users/dereneaton","html_url":"https://github.com/dereneaton","followers_url":"https://api.github.com/users/dereneaton/followers","following_url":"https://api.github.com/users/dereneaton/following{/other_user}","gists_url":"https://api.github.com/users/dereneaton/gists{/gist_id}","starred_url":"https://api.github.com/users/dereneaton/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dereneaton/subscriptions","organizations_url":"https://api.github.com/users/dereneaton/orgs","repos_url":"https://api.github.com/users/dereneaton/repos","events_url":"https://api.github.com/users/dereneaton/events{/privacy}","received_events_url":"https://api.github.com/users/dereneaton/received_events","type":"User","site_admin":false},"created_at":"2016-12-24T20:11:17Z","updated_at":"2016-12-24T20:11:17Z","body":"Maybe this is caused by having Samples with 0 consens reads. We should test with a data set like that and see if the problem has been fixed. Solution is that we should skip those samples, I think. Ideally the user should branch to remove the samples with no data, so they are removed completely from the Assembly object. "}}
{"actor":{"display_login":"dereneaton"}}