{"action":"opened","issue":{"url":"https://api.github.com/repos/nrnb/GoogleSummerOfCode/issues/60","repository_url":"https://api.github.com/repos/nrnb/GoogleSummerOfCode","labels_url":"https://api.github.com/repos/nrnb/GoogleSummerOfCode/issues/60/labels{/name}","comments_url":"https://api.github.com/repos/nrnb/GoogleSummerOfCode/issues/60/comments","events_url":"https://api.github.com/repos/nrnb/GoogleSummerOfCode/issues/60/events","html_url":"https://github.com/nrnb/GoogleSummerOfCode/issues/60","id":137562567,"number":60,"title":"Web based SBGN editor","user":{"login":"ugurdogrusoz","id":3874988,"avatar_url":"https://avatars.githubusercontent.com/u/3874988?v=3","gravatar_id":"","url":"https://api.github.com/users/ugurdogrusoz","html_url":"https://github.com/ugurdogrusoz","followers_url":"https://api.github.com/users/ugurdogrusoz/followers","following_url":"https://api.github.com/users/ugurdogrusoz/following{/other_user}","gists_url":"https://api.github.com/users/ugurdogrusoz/gists{/gist_id}","starred_url":"https://api.github.com/users/ugurdogrusoz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ugurdogrusoz/subscriptions","organizations_url":"https://api.github.com/users/ugurdogrusoz/orgs","repos_url":"https://api.github.com/users/ugurdogrusoz/repos","events_url":"https://api.github.com/users/ugurdogrusoz/events{/privacy}","received_events_url":"https://api.github.com/users/ugurdogrusoz/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-03-01T12:35:32Z","updated_at":"2016-03-01T12:35:32Z","closed_at":null,"body":"### Background\r\nSBGNViz is a software tool/library for viewing process description maps in Systems Biology Graphical Notation (SBGN-PD) [1]. It is based on [Cytoscape.js](http://js.cytoscape.org). A sample application for the library is provided [here](http://www.cs.bilkent.edu.tr/~ivis/SBGNViz.js/).\r\n\r\n### Goal\r\nWith this project we aim to turn SBGNViz into a full-blown editor/curator tool for biologists to construct new models or modify existing ones in SBGN-PD notation. \r\n\r\n### Description\r\nCurrently validation services are available within LibSBGN but only from within desktop applications written in Java and C++. This project will especially enable access to LibSBGN's validation support from within web based software. The initial support will be for Process Description maps but, time allowing, support will be extended to Entity Relationship and Activity Flow maps as well.\r\n\r\n### Potential Mentors\r\nUgur Dogrusoz\r\n\r\n### Contact\r\nugurdogrusoz@gmail.com\r\n\r\n[1] M. Sari, I. Bahceci, U. Dogrusoz, S.O. Sumer, B.A. Aksoy, O. Babur, E. Demir, \"SBGNViz: a tool for visualization and complexity management of SBGN process description maps\", PLoS ONE, 10(6), e0128985, 2015."}}