{"action":"created","comment":{"url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/comments/72489708","id":72489708,"diff_hunk":"@@ -5,13 +5,13 @@ lazy val core = (project in file(\"core\"))\n   .settings(coreSettings:_*)\n   .withTestSettings\n \n-lazy val gcsfilesystem = (project in file(\"filesystems/gcs\"))\n+lazy val gcsFileSystem = (project in file(\"filesystems/gcs\"))\n   .settings(gcsFileSystemSettings:_*)\n   .withTestSettings\n \n lazy val database = (project in file(\"database\"))\n   .settings(databaseSettings:_*)\n-  .dependsOn(core % \"test->test\")\n+  .dependsOn(core % \"test->test\") // TODO: PBE: Remove once PostMVP tag removed from test","path":"build.sbt","position":12,"original_position":12,"commit_id":"af47700e2bd2fe32a0a0b5952c51c360bff35630","original_commit_id":"af47700e2bd2fe32a0a0b5952c51c360bff35630","user":{"login":"geoffjentry","id":961771,"avatar_url":"https://avatars.githubusercontent.com/u/961771?v=3","gravatar_id":"","url":"https://api.github.com/users/geoffjentry","html_url":"https://github.com/geoffjentry","followers_url":"https://api.github.com/users/geoffjentry/followers","following_url":"https://api.github.com/users/geoffjentry/following{/other_user}","gists_url":"https://api.github.com/users/geoffjentry/gists{/gist_id}","starred_url":"https://api.github.com/users/geoffjentry/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/geoffjentry/subscriptions","organizations_url":"https://api.github.com/users/geoffjentry/orgs","repos_url":"https://api.github.com/users/geoffjentry/repos","events_url":"https://api.github.com/users/geoffjentry/events{/privacy}","received_events_url":"https://api.github.com/users/geoffjentry/received_events","type":"User","site_admin":false},"body":"Similar comment which I already know you disagree with, I don't see the point anymore for having todo's tagged as PBE - IMO 'PBE' is a completed project","created_at":"2016-07-27T17:56:54Z","updated_at":"2016-07-27T17:56:54Z","html_url":"https://github.com/broadinstitute/cromwell/pull/1202#discussion_r72489708","pull_request_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202","_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/comments/72489708"},"html":{"href":"https://github.com/broadinstitute/cromwell/pull/1202#discussion_r72489708"},"pull_request":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202"}}},"pull_request":{"url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202","id":78759063,"html_url":"https://github.com/broadinstitute/cromwell/pull/1202","diff_url":"https://github.com/broadinstitute/cromwell/pull/1202.diff","patch_url":"https://github.com/broadinstitute/cromwell/pull/1202.patch","issue_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/1202","number":1202,"state":"open","locked":false,"title":"Return of the SGE (& friends!)","user":{"login":"kshakir","id":791985,"avatar_url":"https://avatars.githubusercontent.com/u/791985?v=3","gravatar_id":"","url":"https://api.github.com/users/kshakir","html_url":"https://github.com/kshakir","followers_url":"https://api.github.com/users/kshakir/followers","following_url":"https://api.github.com/users/kshakir/following{/other_user}","gists_url":"https://api.github.com/users/kshakir/gists{/gist_id}","starred_url":"https://api.github.com/users/kshakir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kshakir/subscriptions","organizations_url":"https://api.github.com/users/kshakir/orgs","repos_url":"https://api.github.com/users/kshakir/repos","events_url":"https://api.github.com/users/kshakir/events{/privacy}","received_events_url":"https://api.github.com/users/kshakir/received_events","type":"User","site_admin":false},"body":"Added a new Shared File System (SFS) Backend package as a base for any/most backends wanting to execute cromwell calls on an SFS.\r\nAdded SGE and LSF configs (commented out) to the main `application.conf`, plus other small tweaks.\r\nNon-main `application.conf` files only set the keys that they need to add or override from the main.\r\nMore of the config is defaulted across the board.\r\nA number of classes moved/refactored from other backends for use by the SFS backend.\r\nNew trait `RuntimeAttributesValidation[ValidatedType]` for proccessing runtime attributes.\r\nFirst pass at a `WorkflowFileSystemProvider` that combines a config and workflow options to create a filesystem. Only implemented for local and GCS files.\r\nAdded a Config backend that implements the SFS backend by reading wdl-lite command strings and `job-id-regex`.\r\nCurrently extending SFS backend to create the SGE backend until one can specify runtime attributes via the Config backend.\r\nAdded a \"shadow\" local backend, extending the SFS backend, that will be evaluated for a while before hopefully usurping the original.\r\nFixed integration tests that were attempting to mock the gcs file system.\r\nGave `MetadataDatabaseAccessSpec` a little bit more time the non-split up \"create and query a workflow\".\r\nFixed the `SprayDockerRegistryApiClientSpec` for v1 registries by switching from the `ubuntu` repo to the `registry` repo (we query the registry for a repo hosting images of the docker registry-- inception).","created_at":"2016-07-25T21:54:15Z","updated_at":"2016-07-27T17:56:54Z","closed_at":null,"merged_at":null,"merge_commit_sha":"86ef4be65d633cb83ec7208e38578eb4e58a16ba","assignee":{"login":"geoffjentry","id":961771,"avatar_url":"https://avatars.githubusercontent.com/u/961771?v=3","gravatar_id":"","url":"https://api.github.com/users/geoffjentry","html_url":"https://github.com/geoffjentry","followers_url":"https://api.github.com/users/geoffjentry/followers","following_url":"https://api.github.com/users/geoffjentry/following{/other_user}","gists_url":"https://api.github.com/users/geoffjentry/gists{/gist_id}","starred_url":"https://api.github.com/users/geoffjentry/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/geoffjentry/subscriptions","organizations_url":"https://api.github.com/users/geoffjentry/orgs","repos_url":"https://api.github.com/users/geoffjentry/repos","events_url":"https://api.github.com/users/geoffjentry/events{/privacy}","received_events_url":"https://api.github.com/users/geoffjentry/received_events","type":"User","site_admin":false},"assignees":[{"login":"geoffjentry","id":961771,"avatar_url":"https://avatars.githubusercontent.com/u/961771?v=3","gravatar_id":"","url":"https://api.github.com/users/geoffjentry","html_url":"https://github.com/geoffjentry","followers_url":"https://api.github.com/users/geoffjentry/followers","following_url":"https://api.github.com/users/geoffjentry/following{/other_user}","gists_url":"https://api.github.com/users/geoffjentry/gists{/gist_id}","starred_url":"https://api.github.com/users/geoffjentry/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/geoffjentry/subscriptions","organizations_url":"https://api.github.com/users/geoffjentry/orgs","repos_url":"https://api.github.com/users/geoffjentry/repos","events_url":"https://api.github.com/users/geoffjentry/events{/privacy}","received_events_url":"https://api.github.com/users/geoffjentry/received_events","type":"User","site_admin":false},{"login":"mcovarr","id":10790523,"avatar_url":"https://avatars.githubusercontent.com/u/10790523?v=3","gravatar_id":"","url":"https://api.github.com/users/mcovarr","html_url":"https://github.com/mcovarr","followers_url":"https://api.github.com/users/mcovarr/followers","following_url":"https://api.github.com/users/mcovarr/following{/other_user}","gists_url":"https://api.github.com/users/mcovarr/gists{/gist_id}","starred_url":"https://api.github.com/users/mcovarr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mcovarr/subscriptions","organizations_url":"https://api.github.com/users/mcovarr/orgs","repos_url":"https://api.github.com/users/mcovarr/repos","events_url":"https://api.github.com/users/mcovarr/events{/privacy}","received_events_url":"https://api.github.com/users/mcovarr/received_events","type":"User","site_admin":false}],"milestone":null,"commits_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202/commits","review_comments_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202/comments","review_comment_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/comments{/number}","comments_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/1202/comments","statuses_url":"https://api.github.com/repos/broadinstitute/cromwell/statuses/af47700e2bd2fe32a0a0b5952c51c360bff35630","head":{"label":"broadinstitute:ks_return_of_the_sge","ref":"ks_return_of_the_sge","sha":"af47700e2bd2fe32a0a0b5952c51c360bff35630","user":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"repo":{"id":34136406,"name":"cromwell","full_name":"broadinstitute/cromwell","owner":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/broadinstitute/cromwell","description":"Workflow Execution Engine using WDL","fork":false,"url":"https://api.github.com/repos/broadinstitute/cromwell","forks_url":"https://api.github.com/repos/broadinstitute/cromwell/forks","keys_url":"https://api.github.com/repos/broadinstitute/cromwell/keys{/key_id}","collaborators_url":"https://api.github.com/repos/broadinstitute/cromwell/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/broadinstitute/cromwell/teams","hooks_url":"https://api.github.com/repos/broadinstitute/cromwell/hooks","issue_events_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/events{/number}","events_url":"https://api.github.com/repos/broadinstitute/cromwell/events","assignees_url":"https://api.github.com/repos/broadinstitute/cromwell/assignees{/user}","branches_url":"https://api.github.com/repos/broadinstitute/cromwell/branches{/branch}","tags_url":"https://api.github.com/repos/broadinstitute/cromwell/tags","blobs_url":"https://api.github.com/repos/broadinstitute/cromwell/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/broadinstitute/cromwell/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/broadinstitute/cromwell/git/refs{/sha}","trees_url":"https://api.github.com/repos/broadinstitute/cromwell/git/trees{/sha}","statuses_url":"https://api.github.com/repos/broadinstitute/cromwell/statuses/{sha}","languages_url":"https://api.github.com/repos/broadinstitute/cromwell/languages","stargazers_url":"https://api.github.com/repos/broadinstitute/cromwell/stargazers","contributors_url":"https://api.github.com/repos/broadinstitute/cromwell/contributors","subscribers_url":"https://api.github.com/repos/broadinstitute/cromwell/subscribers","subscription_url":"https://api.github.com/repos/broadinstitute/cromwell/subscription","commits_url":"https://api.github.com/repos/broadinstitute/cromwell/commits{/sha}","git_commits_url":"https://api.github.com/repos/broadinstitute/cromwell/git/commits{/sha}","comments_url":"https://api.github.com/repos/broadinstitute/cromwell/comments{/number}","issue_comment_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/comments{/number}","contents_url":"https://api.github.com/repos/broadinstitute/cromwell/contents/{+path}","compare_url":"https://api.github.com/repos/broadinstitute/cromwell/compare/{base}...{head}","merges_url":"https://api.github.com/repos/broadinstitute/cromwell/merges","archive_url":"https://api.github.com/repos/broadinstitute/cromwell/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/broadinstitute/cromwell/downloads","issues_url":"https://api.github.com/repos/broadinstitute/cromwell/issues{/number}","pulls_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls{/number}","milestones_url":"https://api.github.com/repos/broadinstitute/cromwell/milestones{/number}","notifications_url":"https://api.github.com/repos/broadinstitute/cromwell/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/broadinstitute/cromwell/labels{/name}","releases_url":"https://api.github.com/repos/broadinstitute/cromwell/releases{/id}","deployments_url":"https://api.github.com/repos/broadinstitute/cromwell/deployments","created_at":"2015-04-17T19:39:36Z","updated_at":"2016-07-19T15:31:37Z","pushed_at":"2016-07-27T17:41:23Z","git_url":"git://github.com/broadinstitute/cromwell.git","ssh_url":"git@github.com:broadinstitute/cromwell.git","clone_url":"https://github.com/broadinstitute/cromwell.git","svn_url":"https://github.com/broadinstitute/cromwell","homepage":"","size":8161,"stargazers_count":77,"watchers_count":77,"language":"Scala","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":17,"mirror_url":null,"open_issues_count":129,"forks":17,"open_issues":129,"watchers":77,"default_branch":"develop"}},"base":{"label":"broadinstitute:develop","ref":"develop","sha":"0b1743b29ac4434102f2375b124e91c704c5033a","user":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"repo":{"id":34136406,"name":"cromwell","full_name":"broadinstitute/cromwell","owner":{"login":"broadinstitute","id":393552,"avatar_url":"https://avatars.githubusercontent.com/u/393552?v=3","gravatar_id":"","url":"https://api.github.com/users/broadinstitute","html_url":"https://github.com/broadinstitute","followers_url":"https://api.github.com/users/broadinstitute/followers","following_url":"https://api.github.com/users/broadinstitute/following{/other_user}","gists_url":"https://api.github.com/users/broadinstitute/gists{/gist_id}","starred_url":"https://api.github.com/users/broadinstitute/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/broadinstitute/subscriptions","organizations_url":"https://api.github.com/users/broadinstitute/orgs","repos_url":"https://api.github.com/users/broadinstitute/repos","events_url":"https://api.github.com/users/broadinstitute/events{/privacy}","received_events_url":"https://api.github.com/users/broadinstitute/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/broadinstitute/cromwell","description":"Workflow Execution Engine using WDL","fork":false,"url":"https://api.github.com/repos/broadinstitute/cromwell","forks_url":"https://api.github.com/repos/broadinstitute/cromwell/forks","keys_url":"https://api.github.com/repos/broadinstitute/cromwell/keys{/key_id}","collaborators_url":"https://api.github.com/repos/broadinstitute/cromwell/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/broadinstitute/cromwell/teams","hooks_url":"https://api.github.com/repos/broadinstitute/cromwell/hooks","issue_events_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/events{/number}","events_url":"https://api.github.com/repos/broadinstitute/cromwell/events","assignees_url":"https://api.github.com/repos/broadinstitute/cromwell/assignees{/user}","branches_url":"https://api.github.com/repos/broadinstitute/cromwell/branches{/branch}","tags_url":"https://api.github.com/repos/broadinstitute/cromwell/tags","blobs_url":"https://api.github.com/repos/broadinstitute/cromwell/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/broadinstitute/cromwell/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/broadinstitute/cromwell/git/refs{/sha}","trees_url":"https://api.github.com/repos/broadinstitute/cromwell/git/trees{/sha}","statuses_url":"https://api.github.com/repos/broadinstitute/cromwell/statuses/{sha}","languages_url":"https://api.github.com/repos/broadinstitute/cromwell/languages","stargazers_url":"https://api.github.com/repos/broadinstitute/cromwell/stargazers","contributors_url":"https://api.github.com/repos/broadinstitute/cromwell/contributors","subscribers_url":"https://api.github.com/repos/broadinstitute/cromwell/subscribers","subscription_url":"https://api.github.com/repos/broadinstitute/cromwell/subscription","commits_url":"https://api.github.com/repos/broadinstitute/cromwell/commits{/sha}","git_commits_url":"https://api.github.com/repos/broadinstitute/cromwell/git/commits{/sha}","comments_url":"https://api.github.com/repos/broadinstitute/cromwell/comments{/number}","issue_comment_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/comments{/number}","contents_url":"https://api.github.com/repos/broadinstitute/cromwell/contents/{+path}","compare_url":"https://api.github.com/repos/broadinstitute/cromwell/compare/{base}...{head}","merges_url":"https://api.github.com/repos/broadinstitute/cromwell/merges","archive_url":"https://api.github.com/repos/broadinstitute/cromwell/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/broadinstitute/cromwell/downloads","issues_url":"https://api.github.com/repos/broadinstitute/cromwell/issues{/number}","pulls_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls{/number}","milestones_url":"https://api.github.com/repos/broadinstitute/cromwell/milestones{/number}","notifications_url":"https://api.github.com/repos/broadinstitute/cromwell/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/broadinstitute/cromwell/labels{/name}","releases_url":"https://api.github.com/repos/broadinstitute/cromwell/releases{/id}","deployments_url":"https://api.github.com/repos/broadinstitute/cromwell/deployments","created_at":"2015-04-17T19:39:36Z","updated_at":"2016-07-19T15:31:37Z","pushed_at":"2016-07-27T17:41:23Z","git_url":"git://github.com/broadinstitute/cromwell.git","ssh_url":"git@github.com:broadinstitute/cromwell.git","clone_url":"https://github.com/broadinstitute/cromwell.git","svn_url":"https://github.com/broadinstitute/cromwell","homepage":"","size":8161,"stargazers_count":77,"watchers_count":77,"language":"Scala","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":17,"mirror_url":null,"open_issues_count":129,"forks":17,"open_issues":129,"watchers":77,"default_branch":"develop"}},"_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202"},"html":{"href":"https://github.com/broadinstitute/cromwell/pull/1202"},"issue":{"href":"https://api.github.com/repos/broadinstitute/cromwell/issues/1202"},"comments":{"href":"https://api.github.com/repos/broadinstitute/cromwell/issues/1202/comments"},"review_comments":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202/comments"},"review_comment":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/1202/commits"},"statuses":{"href":"https://api.github.com/repos/broadinstitute/cromwell/statuses/af47700e2bd2fe32a0a0b5952c51c360bff35630"}}}}
{"actor":{"display_login":"geoffjentry"}}