{"action":"created","issue":{"url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/335","repository_url":"https://api.github.com/repos/BioJulia/Bio.jl","labels_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/335/labels{/name}","comments_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/335/comments","events_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/335/events","html_url":"https://github.com/BioJulia/Bio.jl/pull/335","id":176171761,"number":335,"title":"re-organize BAMRecord fields","user":{"login":"bicycle1885","id":905683,"avatar_url":"https://avatars.githubusercontent.com/u/905683?v=3","gravatar_id":"","url":"https://api.github.com/users/bicycle1885","html_url":"https://github.com/bicycle1885","followers_url":"https://api.github.com/users/bicycle1885/followers","following_url":"https://api.github.com/users/bicycle1885/following{/other_user}","gists_url":"https://api.github.com/users/bicycle1885/gists{/gist_id}","starred_url":"https://api.github.com/users/bicycle1885/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bicycle1885/subscriptions","organizations_url":"https://api.github.com/users/bicycle1885/orgs","repos_url":"https://api.github.com/users/bicycle1885/repos","events_url":"https://api.github.com/users/bicycle1885/events{/privacy}","received_events_url":"https://api.github.com/users/bicycle1885/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/BioJulia/Bio.jl/labels/stage:%20review","name":"stage: review","color":"c2e0c6"}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-09-10T09:52:57Z","updated_at":"2016-09-10T10:20:46Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/BioJulia/Bio.jl/pulls/335","html_url":"https://github.com/BioJulia/Bio.jl/pull/335","diff_url":"https://github.com/BioJulia/Bio.jl/pull/335.diff","patch_url":"https://github.com/BioJulia/Bio.jl/pull/335.patch"},"body":"This change reduces the number of read/writer operations when reading/writing BAM\r\nrecords from a file, which improves the performance of BAM I/O.\r\n\r\n```julia\r\nusing Bio.Align\r\n\r\nlet\r\n    reader = open(BAMReader, \"GSE25840_GSM424320_GM06985_gencode_spliced.bam\")\r\n    record = BAMRecord()\r\n    @time while !eof(reader)\r\n        read!(reader, record)\r\n    end\r\n    close(reader)\r\nend\r\n\r\n#=\r\n~/.j/v/Bio (master|…) $ julia5 test.jl\r\n 13.365396 seconds (22.08 M allocations: 346.885 MB, 0.15% gc time)\r\n~/.j/v/Bio (master|…) $ julia5 test.jl\r\n 13.287189 seconds (22.08 M allocations: 346.885 MB, 0.15% gc time)\r\nv.s.\r\n~/.j/v/Bio (reorg-bamrecord|…) $ julia5 test.jl\r\n 12.702789 seconds (1.42 M allocations: 31.639 MB, 0.04% gc time)\r\n~/.j/v/Bio (reorg-bamrecord|…) $ julia5 test.jl\r\n 12.796799 seconds (1.42 M allocations: 31.639 MB, 0.05% gc time)\r\n=#\r\n```"},"comment":{"url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/comments/246104101","html_url":"https://github.com/BioJulia/Bio.jl/pull/335#issuecomment-246104101","issue_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/335","id":246104101,"user":{"login":"coveralls","id":2354108,"avatar_url":"https://avatars.githubusercontent.com/u/2354108?v=3","gravatar_id":"","url":"https://api.github.com/users/coveralls","html_url":"https://github.com/coveralls","followers_url":"https://api.github.com/users/coveralls/followers","following_url":"https://api.github.com/users/coveralls/following{/other_user}","gists_url":"https://api.github.com/users/coveralls/gists{/gist_id}","starred_url":"https://api.github.com/users/coveralls/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/coveralls/subscriptions","organizations_url":"https://api.github.com/users/coveralls/orgs","repos_url":"https://api.github.com/users/coveralls/repos","events_url":"https://api.github.com/users/coveralls/events{/privacy}","received_events_url":"https://api.github.com/users/coveralls/received_events","type":"User","site_admin":false},"created_at":"2016-09-10T10:20:46Z","updated_at":"2016-09-10T10:20:46Z","body":"\n[![Coverage Status](https://coveralls.io/builds/7828526/badge)](https://coveralls.io/builds/7828526)\n\nCoverage increased (+0.5%) to 72.421% when pulling **c3dd9773de2347dec4fd8aaa372bd87ec0153a76 on bicycle1885:reorg-bamrecord** into **84d22864b7de3c04a8fb6f9b20321843735d0769 on BioJulia:master**.\n"}}
{"actor":{"display_login":"coveralls"}}