{"action":"created","issue":{"url":"https://api.github.com/repos/NESCent/popgenInfo/issues/193","repository_url":"https://api.github.com/repos/NESCent/popgenInfo","labels_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/193/labels{/name}","comments_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/193/comments","events_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/193/events","html_url":"https://github.com/NESCent/popgenInfo/issues/193","id":190355060,"number":193,"title":"Builds fails after CRAN package update","user":{"login":"hlapp","id":51458,"avatar_url":"https://avatars.githubusercontent.com/u/51458?v=3","gravatar_id":"","url":"https://api.github.com/users/hlapp","html_url":"https://github.com/hlapp","followers_url":"https://api.github.com/users/hlapp/followers","following_url":"https://api.github.com/users/hlapp/following{/other_user}","gists_url":"https://api.github.com/users/hlapp/gists{/gist_id}","starred_url":"https://api.github.com/users/hlapp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hlapp/subscriptions","organizations_url":"https://api.github.com/users/hlapp/orgs","repos_url":"https://api.github.com/users/hlapp/repos","events_url":"https://api.github.com/users/hlapp/events{/privacy}","received_events_url":"https://api.github.com/users/hlapp/received_events","type":"User","site_admin":false},"labels":[{"id":188485194,"url":"https://api.github.com/repos/NESCent/popgenInfo/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-11-18T16:02:09Z","updated_at":"2016-11-18T16:04:27Z","closed_at":null,"body":"Our current `master` branch [fails to build](https://circleci.com/gh/NESCent/popgenInfo/552):\r\n\r\n```\r\nlabel: PCAdapt\r\nQuitting from lines 102-129 (2016-01-26-SNP-selection.Rmd) \r\nError in pcadapt(genotype, K = K, transpose = TRUE) : \r\n  Argument transpose is deprecated. Please refer to the latest vignette for further information.\r\nCalls: <Anonymous> ... withCallingHandlers -> withVisible -> eval -> eval -> pcadapt\r\n\r\nExecution halted\r\nmake[1]: *** [2016-01-26-SNP-selection.html] Error 1\r\n```\r\n\r\nIt seems odd that a deprecation results in an error, but I don't know enough about the details of the respective package. @zkamvar: any ideas how best to fix this?"},"comment":{"url":"https://api.github.com/repos/NESCent/popgenInfo/issues/comments/261568706","html_url":"https://github.com/NESCent/popgenInfo/issues/193#issuecomment-261568706","issue_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/193","id":261568706,"user":{"login":"hlapp","id":51458,"avatar_url":"https://avatars.githubusercontent.com/u/51458?v=3","gravatar_id":"","url":"https://api.github.com/users/hlapp","html_url":"https://github.com/hlapp","followers_url":"https://api.github.com/users/hlapp/followers","following_url":"https://api.github.com/users/hlapp/following{/other_user}","gists_url":"https://api.github.com/users/hlapp/gists{/gist_id}","starred_url":"https://api.github.com/users/hlapp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hlapp/subscriptions","organizations_url":"https://api.github.com/users/hlapp/orgs","repos_url":"https://api.github.com/users/hlapp/repos","events_url":"https://api.github.com/users/hlapp/events{/privacy}","received_events_url":"https://api.github.com/users/hlapp/received_events","type":"User","site_admin":false},"created_at":"2016-11-18T16:04:27Z","updated_at":"2016-11-18T16:04:27Z","body":"And FYI, the reason I reran the last ([previously successful](https://circleci.com/gh/NESCent/popgenInfo/550)) build was that the rpopgen container changed (see NESCent/popgen-docker#14) and was rebuilt."}}
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