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Manipulate fq-rdd","description":"Implement fastq processing within Spark","creator":{"login":"keuv-grvl","id":2539879,"avatar_url":"https://avatars.githubusercontent.com/u/2539879?v=3","gravatar_id":"","url":"https://api.github.com/users/keuv-grvl","html_url":"https://github.com/keuv-grvl","followers_url":"https://api.github.com/users/keuv-grvl/followers","following_url":"https://api.github.com/users/keuv-grvl/following{/other_user}","gists_url":"https://api.github.com/users/keuv-grvl/gists{/gist_id}","starred_url":"https://api.github.com/users/keuv-grvl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/keuv-grvl/subscriptions","organizations_url":"https://api.github.com/users/keuv-grvl/orgs","repos_url":"https://api.github.com/users/keuv-grvl/repos","events_url":"https://api.github.com/users/keuv-grvl/events{/privacy}","received_events_url":"https://api.github.com/users/keuv-grvl/received_events","type":"User","site_admin":false},"open_issues":2,"closed_issues":0,"state":"open","created_at":"2016-11-03T15:47:43Z","updated_at":"2016-11-03T16:49:22Z","due_on":"2016-11-15T00:00:00Z","closed_at":null},"comments":0,"created_at":"2016-11-03T16:49:22Z","updated_at":"2016-11-03T16:49:22Z","closed_at":null,"body":"Input is a `fqrdd` file.\r\n\r\nWe want to know:\r\n- number of:\r\n  - entries\r\n  - nucleotides (A, T, G, C, N)\r\n- sequence length:\r\n  - for each entry\r\n  - distribution\r\n- mean quality:\r\n  - per entry\r\n  - per nucleotide position for all entries\r\n  - distribution\r\n"}}
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