{"action":"created","issue":{"url":"https://api.github.com/repos/arq5x/gemini/issues/686","repository_url":"https://api.github.com/repos/arq5x/gemini","labels_url":"https://api.github.com/repos/arq5x/gemini/issues/686/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/gemini/issues/686/comments","events_url":"https://api.github.com/repos/arq5x/gemini/issues/686/events","html_url":"https://github.com/arq5x/gemini/issues/686","id":138576467,"number":686,"title":"Show homozygous reference samples in the --show-samples and --show-families queries","user":{"login":"roryk","id":414586,"avatar_url":"https://avatars.githubusercontent.com/u/414586?v=3","gravatar_id":"","url":"https://api.github.com/users/roryk","html_url":"https://github.com/roryk","followers_url":"https://api.github.com/users/roryk/followers","following_url":"https://api.github.com/users/roryk/following{/other_user}","gists_url":"https://api.github.com/users/roryk/gists{/gist_id}","starred_url":"https://api.github.com/users/roryk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/roryk/subscriptions","organizations_url":"https://api.github.com/users/roryk/orgs","repos_url":"https://api.github.com/users/roryk/repos","events_url":"https://api.github.com/users/roryk/events{/privacy}","received_events_url":"https://api.github.com/users/roryk/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-03-04T20:20:05Z","updated_at":"2016-03-07T15:23:52Z","closed_at":null,"body":"Hi folks,\r\n\r\nWhat do you think about adding a flag or changing the behavior of `--show-samples` and `--show-families` to show the homozygous reference samples in addition to the variant_samples and all of that. It comes up when looking at positions where the reference is a minor allele, its hard to query and find the samples and families that are homozygous reference vs. having a no call at the position, using those two summary functions. I couldn't think of a way to get at that information easily."},"comment":{"url":"https://api.github.com/repos/arq5x/gemini/issues/comments/193296793","html_url":"https://github.com/arq5x/gemini/issues/686#issuecomment-193296793","issue_url":"https://api.github.com/repos/arq5x/gemini/issues/686","id":193296793,"user":{"login":"roryk","id":414586,"avatar_url":"https://avatars.githubusercontent.com/u/414586?v=3","gravatar_id":"","url":"https://api.github.com/users/roryk","html_url":"https://github.com/roryk","followers_url":"https://api.github.com/users/roryk/followers","following_url":"https://api.github.com/users/roryk/following{/other_user}","gists_url":"https://api.github.com/users/roryk/gists{/gist_id}","starred_url":"https://api.github.com/users/roryk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/roryk/subscriptions","organizations_url":"https://api.github.com/users/roryk/orgs","repos_url":"https://api.github.com/users/roryk/repos","events_url":"https://api.github.com/users/roryk/events{/privacy}","received_events_url":"https://api.github.com/users/roryk/received_events","type":"User","site_admin":false},"created_at":"2016-03-07T15:23:52Z","updated_at":"2016-03-07T15:23:52Z","body":"Sure, I can totally implement it, I just wanted to bounce it off of you folks before I changed anything."}}