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static <T> List<T> internalShuffle(List<T> originalOrder, String source) {\n-        // If in state of outputting, do not do any shuffling and other stuff\n-        if (!ControlNondeterminism.shouldOutputTrace) {\n-            return originalOrder;\n-        }\n-\n-        // If size of collection to shuffle has at most one element, no need to shuffle\n-        if (originalOrder.size() <= 1) {\n-            return originalOrder;\n-        }\n-\n-        Random currentRandom = ControlNondeterminism.getRandomnessSource(source);\n-        // If randomness was null, that means do not shuffle\n-        if (currentRandom == null) {\n-            return originalOrder;\n-        }\n-\n-        List<T> newOrder = new ArrayList<T>(originalOrder);\n-        Collections.shuffle(newOrder, currentRandom);\n-\n-        // Determine if should return ordered or non-ordered\n-        if (ControlNondeterminism.shouldExploreForInstance()) {\n-            ControlNondeterminism.printStackTraceIfUniqueDebugPoint();\n-            ControlNondeterminism.count++;\n-            ControlNondeterminism.shuffleCount++;\n-            return newOrder;\n-        } else {\n-            ControlNondeterminism.count++;\n-            return originalOrder;\n-        }\n-    }\n+        boolean shouldFlip = nondex.getBoolean();\n \n-    private static void printStackTraceIfUniqueDebugPoint() {\n-        if (ControlNondeterminism.config.shouldPrintStackTrace && ControlNondeterminism.isDebuggingUniquePoint()) {\n-            StackTraceElement[] traces = Thread.currentThread().getStackTrace();\n-            StringBuilder stackstring = new StringBuilder();\n-            for (StackTraceElement traceElement : traces) {\n-                stackstring.append(traceElement.toString() + String.format(\"%n\"));\n-            }\n-            try {\n-                // Writing to file invokes NonDex, so this flag is to prevent it from infinitely trying to write to file,\n-                // and to prevent it from doing other things when all we want is to print out a stack trace\n-                ControlNondeterminism.shouldOutputTrace = false;\n-                Files.write(ControlNondeterminism.config.getDebugPath(),\n-                            (\"TEST: \" + ControlNondeterminism.config.testName + String.format(\"%n\") + stackstring.toString())\n-                            .getBytes(),\n-                    StandardOpenOption.CREATE, StandardOpenOption.APPEND);\n-            } catch (IOException ioe) {\n-                Logger.getGlobal().log(Level.SEVERE, \"Exception when printing debug info.\", ioe);\n-            } finally {\n-                ControlNondeterminism.shouldOutputTrace = true;\n+        if (shouldFlip) {\n+            for (int i = 0; i < originalArrays.length; i++) {\n+                originalArrays[i] = Arrays.copyOf(originalArrays[i], originalArrays[i].length + 1);\n             }\n         }\n-    }\n \n-    private static boolean isDebuggingUniquePoint() {\n-        return ControlNondeterminism.config.start >= 0 && ControlNondeterminism.config.end >= 0\n-                && ControlNondeterminism.config.start == ControlNondeterminism.config.end\n-                && ControlNondeterminism.count == ControlNondeterminism.config.start;\n-    }\n+        return originalArrays;\n \n-    private static boolean shouldExploreForInstance() {\n-        return ControlNondeterminism.count >= ControlNondeterminism.config.start\n-                && ControlNondeterminism.count <= ControlNondeterminism.config.end;\n     }\n \n-    private static String getSource() {\n-        return Thread.currentThread().getStackTrace()[3].toString();\n-\n-    }\n \n     private static class JVMShutdownHook extends Thread {\n         @Override\n         public void run() {\n-            ControlNondeterminism.config.createNondexDirIfNeeded();\n+            nondex.getConfig().createNondexDirIfNeeded();\n             try {\n-                int localCount = ControlNondeterminism.count;\n-                int localShufflesCount = ControlNondeterminism.shuffleCount;\n-                Files.write(ControlNondeterminism.config.getConfigPath(),\n-                        ControlNondeterminism.config.toString().getBytes(),\n-                        StandardOpenOption.CREATE,\n+                int localCount = nondex.getPossibleExplorations();\n+                int localShufflesCount = nondex.getActualExplorations();\n+                Files.write(nondex.getConfig().getConfigPath(),\n+                        nondex.getConfig().toString().getBytes(), StandardOpenOption.CREATE,\n                         StandardOpenOption.APPEND);\n-                Files.write(ControlNondeterminism.config.getInvocationsPath(),\n+                Files.write(nondex.getConfig().getInvocationsPath(),\n                         (\"COUNT:\" + localCount + String.format(\"%n\")).getBytes(),\n                         StandardOpenOption.CREATE, StandardOpenOption.APPEND);\n-                Files.write(ControlNondeterminism.config.getInvocationsPath(),\n+                Files.write(nondex.getConfig().getInvocationsPath(),\n                         (\"SHUFFLES:\" + localShufflesCount + String.format(\"%n\")).getBytes(),\n                         StandardOpenOption.APPEND);\n             } catch (IOException ioe) {\n-                Logger.getGlobal().log(Level.SEVERE, \"Exception when printing shuflling counts in shutdown hook.\", ioe);\n+                Logger.getGlobal().log(Level.SEVERE,\n+                        \"IOException when printing shuffling counts in shutdown hook.\", ioe);\n+            } catch (Throwable ex) {","path":"nondex-common/src/main/java/edu/illinois/nondex/shuffling/ControlNondeterminism.java","position":208,"original_position":208,"commit_id":"22471b5190bb401c5590b93f350ca8bf64242ab7","original_commit_id":"22471b5190bb401c5590b93f350ca8bf64242ab7","user":{"login":"alexgyori","id":1882366,"avatar_url":"https://avatars.githubusercontent.com/u/1882366?v=3","gravatar_id":"","url":"https://api.github.com/users/alexgyori","html_url":"https://github.com/alexgyori","followers_url":"https://api.github.com/users/alexgyori/followers","following_url":"https://api.github.com/users/alexgyori/following{/other_user}","gists_url":"https://api.github.com/users/alexgyori/gists{/gist_id}","starred_url":"https://api.github.com/users/alexgyori/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexgyori/subscriptions","organizations_url":"https://api.github.com/users/alexgyori/orgs","repos_url":"https://api.github.com/users/alexgyori/repos","events_url":"https://api.github.com/users/alexgyori/events{/privacy}","received_events_url":"https://api.github.com/users/alexgyori/received_events","type":"User","site_admin":false},"body":"I 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