{"action":"created","issue":{"url":"https://api.github.com/repos/radical-cybertools/radical.pilot/issues/931","labels_url":"https://api.github.com/repos/radical-cybertools/radical.pilot/issues/931/labels{/name}","comments_url":"https://api.github.com/repos/radical-cybertools/radical.pilot/issues/931/comments","events_url":"https://api.github.com/repos/radical-cybertools/radical.pilot/issues/931/events","html_url":"https://github.com/radical-cybertools/radical.pilot/issues/931","id":122793210,"number":931,"title":"Gordon pilots fail to bootstrap with gcc error","user":{"login":"mturilli","id":2323492,"avatar_url":"https://avatars.githubusercontent.com/u/2323492?v=3","gravatar_id":"","url":"https://api.github.com/users/mturilli","html_url":"https://github.com/mturilli","followers_url":"https://api.github.com/users/mturilli/followers","following_url":"https://api.github.com/users/mturilli/following{/other_user}","gists_url":"https://api.github.com/users/mturilli/gists{/gist_id}","starred_url":"https://api.github.com/users/mturilli/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mturilli/subscriptions","organizations_url":"https://api.github.com/users/mturilli/orgs","repos_url":"https://api.github.com/users/mturilli/repos","events_url":"https://api.github.com/users/mturilli/events{/privacy}","received_events_url":"https://api.github.com/users/mturilli/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/radical-cybertools/radical.pilot/labels/bug","name":"bug","color":"e11d21"}],"state":"open","locked":false,"assignee":{"login":"andre-merzky","id":1319674,"avatar_url":"https://avatars.githubusercontent.com/u/1319674?v=3","gravatar_id":"","url":"https://api.github.com/users/andre-merzky","html_url":"https://github.com/andre-merzky","followers_url":"https://api.github.com/users/andre-merzky/followers","following_url":"https://api.github.com/users/andre-merzky/following{/other_user}","gists_url":"https://api.github.com/users/andre-merzky/gists{/gist_id}","starred_url":"https://api.github.com/users/andre-merzky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andre-merzky/subscriptions","organizations_url":"https://api.github.com/users/andre-merzky/orgs","repos_url":"https://api.github.com/users/andre-merzky/repos","events_url":"https://api.github.com/users/andre-merzky/events{/privacy}","received_events_url":"https://api.github.com/users/andre-merzky/received_events","type":"User","site_admin":false},"milestone":null,"comments":6,"created_at":"2015-12-17T18:21:28Z","updated_at":"2016-01-26T20:47:00Z","closed_at":null,"body":"Reproduced with both master and devel:\r\n```\r\nintel/2013.1.117(49):ERROR:105: Unable to locate a modulefile for 'mkl'\r\n/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/cc1: error while loading shared libraries: libmpfr.so.1: cannot open shared object file: No such file or directory\r\n```"},"comment":{"url":"https://api.github.com/repos/radical-cybertools/radical.pilot/issues/comments/175222129","html_url":"https://github.com/radical-cybertools/radical.pilot/issues/931#issuecomment-175222129","issue_url":"https://api.github.com/repos/radical-cybertools/radical.pilot/issues/931","id":175222129,"user":{"login":"andre-merzky","id":1319674,"avatar_url":"https://avatars.githubusercontent.com/u/1319674?v=3","gravatar_id":"","url":"https://api.github.com/users/andre-merzky","html_url":"https://github.com/andre-merzky","followers_url":"https://api.github.com/users/andre-merzky/followers","following_url":"https://api.github.com/users/andre-merzky/following{/other_user}","gists_url":"https://api.github.com/users/andre-merzky/gists{/gist_id}","starred_url":"https://api.github.com/users/andre-merzky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andre-merzky/subscriptions","organizations_url":"https://api.github.com/users/andre-merzky/orgs","repos_url":"https://api.github.com/users/andre-merzky/repos","events_url":"https://api.github.com/users/andre-merzky/events{/privacy}","received_events_url":"https://api.github.com/users/andre-merzky/received_events","type":"User","site_admin":false},"created_at":"2016-01-26T20:47:00Z","updated_at":"2016-01-26T20:47:00Z","body":"Quick update: an RPM is missing on the compute nodes.  Admins want to fix the configuration, I don't know when that will happen.  Us working around it would require yet another switch in the config file and bootstrapper, so I'd rather wait for a couple of days before jumping the gun.\r\n\r\nIf somebody urgently needs to use gordon, here is the workaround:\r\n\r\n - create a file named 'cc' with this content (for example in `$HOME/bin/`:\r\n```\r\n#!/bin/sh\r\ngcc \"$@\"\r\n```\r\n - `chmod 0755 $HOME/bin/cc`\r\n - in `resource_xsede.cfg`, change the `pre_bootstrap_1` to contain:\r\n   - `export PATH=$HOME/bin/:\"$PATH\"`\r\n   - module load gnu\r\n\r\nThis will fake a workable `cc` by rerouting the command to `gcc`."}}