{"action":"created","issue":{"url":"https://api.github.com/repos/ewels/MultiQC/issues/313","repository_url":"https://api.github.com/repos/ewels/MultiQC","labels_url":"https://api.github.com/repos/ewels/MultiQC/issues/313/labels{/name}","comments_url":"https://api.github.com/repos/ewels/MultiQC/issues/313/comments","events_url":"https://api.github.com/repos/ewels/MultiQC/issues/313/events","html_url":"https://github.com/ewels/MultiQC/pull/313","id":182259182,"number":313,"title":"now adding mention of rmdup to main module","user":{"login":"avilella","id":158007,"avatar_url":"https://avatars.githubusercontent.com/u/158007?v=3","gravatar_id":"","url":"https://api.github.com/users/avilella","html_url":"https://github.com/avilella","followers_url":"https://api.github.com/users/avilella/followers","following_url":"https://api.github.com/users/avilella/following{/other_user}","gists_url":"https://api.github.com/users/avilella/gists{/gist_id}","starred_url":"https://api.github.com/users/avilella/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/avilella/subscriptions","organizations_url":"https://api.github.com/users/avilella/orgs","repos_url":"https://api.github.com/users/avilella/repos","events_url":"https://api.github.com/users/avilella/events{/privacy}","received_events_url":"https://api.github.com/users/avilella/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-10-11T13:08:05Z","updated_at":"2016-10-11T13:27:57Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/ewels/MultiQC/pulls/313","html_url":"https://github.com/ewels/MultiQC/pull/313","diff_url":"https://github.com/ewels/MultiQC/pull/313.diff","patch_url":"https://github.com/ewels/MultiQC/pull/313.patch"},"body":"ta"},"comment":{"url":"https://api.github.com/repos/ewels/MultiQC/issues/comments/252916122","html_url":"https://github.com/ewels/MultiQC/pull/313#issuecomment-252916122","issue_url":"https://api.github.com/repos/ewels/MultiQC/issues/313","id":252916122,"user":{"login":"avilella","id":158007,"avatar_url":"https://avatars.githubusercontent.com/u/158007?v=3","gravatar_id":"","url":"https://api.github.com/users/avilella","html_url":"https://github.com/avilella","followers_url":"https://api.github.com/users/avilella/followers","following_url":"https://api.github.com/users/avilella/following{/other_user}","gists_url":"https://api.github.com/users/avilella/gists{/gist_id}","starred_url":"https://api.github.com/users/avilella/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/avilella/subscriptions","organizations_url":"https://api.github.com/users/avilella/orgs","repos_url":"https://api.github.com/users/avilella/repos","events_url":"https://api.github.com/users/avilella/events{/privacy}","received_events_url":"https://api.github.com/users/avilella/received_events","type":"User","site_admin":false},"created_at":"2016-10-11T13:27:57Z","updated_at":"2016-10-11T13:27:57Z","body":"Ah, I see. I must have left something out from the copy+pasting...\n\nOn Tue, Oct 11, 2016 at 2:19 PM, Phil Ewels <notifications@github.com>\nwrote:\n\n> Bad news - now that your new code is actually being run, your build is\n> failing 😉\n> https://travis-ci.org/ewels/MultiQC/builds/166744380\n>\n> Module samtools raised an exception: Traceback (most recent call last):\n>   File \"/home/travis/virtualenv/python2.7.9/lib/python2.7/site-packages/multiqc-0.9.dev0-py2.7.egg/EGG-INFO/scripts/multiqc\", line 345, in multiqc\n>     report.modules_output.append(mod())\n>   File \"/home/travis/virtualenv/python2.7.9/lib/python2.7/site-packages/multiqc-0.9.dev0-py2.7.egg/multiqc/modules/samtools/samtools.py\", line 54, in __init__\n>     n['rmdup'] = self.parse_samtools_rmdup()\n>   File \"/home/travis/virtualenv/python2.7.9/lib/python2.7/site-packages/multiqc-0.9.dev0-py2.7.egg/multiqc/modules/samtools/rmdup.py\", line 30, in parse_samtools_rmdup\n>     fh = f['f']NameError: global name 'f' is not defined\n>\n> Try running this locally with example data and getting it to work. Let me\n> know when it's ready to review, or if you need any help..\n>\n> Phil\n>\n> —\n> You are receiving this because you authored the thread.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/ewels/MultiQC/pull/313#issuecomment-252913990>, or mute\n> the thread\n> <https://github.com/notifications/unsubscribe-auth/AAJpN7ofig6yvdHXhyhpMOpKMfxLm33yks5qy4zXgaJpZM4KTm4S>\n> .\n>\n"}}
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