{"action":"created","issue":{"url":"https://api.github.com/repos/IRkernel/IRkernel/issues/298","repository_url":"https://api.github.com/repos/IRkernel/IRkernel","labels_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/298/labels{/name}","comments_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/298/comments","events_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/298/events","html_url":"https://github.com/IRkernel/IRkernel/issues/298","id":148908017,"number":298,"title":"In install.packages(c(\"rzmq\", \"repr\", \"IRkernel\", \"IRdisplay\"),  :   installation of package ‘IRkernel’ had non-zero exit status","user":{"login":"nmolkeri","id":10701840,"avatar_url":"https://avatars.githubusercontent.com/u/10701840?v=3","gravatar_id":"","url":"https://api.github.com/users/nmolkeri","html_url":"https://github.com/nmolkeri","followers_url":"https://api.github.com/users/nmolkeri/followers","following_url":"https://api.github.com/users/nmolkeri/following{/other_user}","gists_url":"https://api.github.com/users/nmolkeri/gists{/gist_id}","starred_url":"https://api.github.com/users/nmolkeri/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nmolkeri/subscriptions","organizations_url":"https://api.github.com/users/nmolkeri/orgs","repos_url":"https://api.github.com/users/nmolkeri/repos","events_url":"https://api.github.com/users/nmolkeri/events{/privacy}","received_events_url":"https://api.github.com/users/nmolkeri/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/IRkernel/IRkernel/labels/docs","name":"docs","color":"eb6420"},{"url":"https://api.github.com/repos/IRkernel/IRkernel/labels/tech%20support","name":"tech support","color":"eeeeee"}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":8,"created_at":"2016-04-17T01:16:46Z","updated_at":"2016-07-19T08:21:33Z","closed_at":"2016-07-15T08:09:49Z","body":"When I run the below code \r\n```\r\ninstall.packages(c('rzmq','repr','IRkernel','IRdisplay'),\r\n+ repos = c('http://irkernel.github.io/', getOption('repos')))\r\n```\r\n\r\nI am getting this error\r\n\r\n```\r\n  There are binary versions available but the source versions are\r\n  later:\r\n         binary source needs_compilation\r\nrepr        0.2    0.4             FALSE\r\nIRkernel    0.4    0.5             FALSE\r\n\r\ntrying URL 'http://irkernel.github.io/bin/macosx/mavericks/contrib/3.2/rzmq_0.7.7.tgz'\r\nContent type 'application/octet-stream' length 81898 bytes (79 KB)\r\n==================================================\r\ndownloaded 79 KB\r\n\r\ntrying URL 'http://irkernel.github.io/bin/macosx/mavericks/contrib/3.2/IRdisplay_0.3.tgz'\r\nContent type 'application/octet-stream' length 21391 bytes (20 KB)\r\n==================================================\r\ndownloaded 20 KB\r\n\r\n\r\nThe downloaded binary packages are in\r\n\t/var/folders/2l/sm3y5dp96mj0shqdl4q8b0180000gn/T//RtmpSeELgF/downloaded_packages\r\ninstalling the source packages ‘repr’, ‘IRkernel’\r\n\r\ntrying URL 'http://irkernel.github.io/src/contrib/repr_0.4.tar.gz'\r\nContent type 'application/octet-stream' length 11355 bytes (11 KB)\r\n==================================================\r\ndownloaded 11 KB\r\n\r\ntrying URL 'http://irkernel.github.io/src/contrib/IRkernel_0.5.tar.gz'\r\nContent type 'application/octet-stream' length 17951 bytes (17 KB)\r\n==================================================\r\ndownloaded 17 KB\r\n\r\n* installing *source* package ‘repr’ ...\r\n** R\r\n** preparing package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded\r\n* DONE (repr)\r\n* installing *source* package ‘IRkernel’ ...\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\nError in dyn.load(file, DLLpath = DLLpath, ...) : \r\n  unable to load shared object '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/rzmq/libs/rzmq.so':\r\n  dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/rzmq/libs/rzmq.so, 6): Library not loaded: /usr/local/lib/libzmq.4.dylib\r\n  Referenced from: /Library/Frameworks/R.framework/Versions/3.2/Resources/library/rzmq/libs/rzmq.so\r\n  Reason: image not found\r\nERROR: lazy loading failed for package ‘IRkernel’\r\n* removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/IRkernel’\r\n\r\nThe downloaded source packages are in\r\n\t‘/private/var/folders/2l/sm3y5dp96mj0shqdl4q8b0180000gn/T/RtmpSeELgF/downloaded_packages’\r\nWarning message:\r\nIn install.packages(c(\"rzmq\", \"repr\", \"IRkernel\", \"IRdisplay\"),  :\r\n  installation of package ‘IRkernel’ had non-zero exit status\r\n```\r\n\r\nCan anyone help me with this. "},"comment":{"url":"https://api.github.com/repos/IRkernel/IRkernel/issues/comments/233563261","html_url":"https://github.com/IRkernel/IRkernel/issues/298#issuecomment-233563261","issue_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/298","id":233563261,"user":{"login":"avislova","id":20061850,"avatar_url":"https://avatars.githubusercontent.com/u/20061850?v=3","gravatar_id":"","url":"https://api.github.com/users/avislova","html_url":"https://github.com/avislova","followers_url":"https://api.github.com/users/avislova/followers","following_url":"https://api.github.com/users/avislova/following{/other_user}","gists_url":"https://api.github.com/users/avislova/gists{/gist_id}","starred_url":"https://api.github.com/users/avislova/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/avislova/subscriptions","organizations_url":"https://api.github.com/users/avislova/orgs","repos_url":"https://api.github.com/users/avislova/repos","events_url":"https://api.github.com/users/avislova/events{/privacy}","received_events_url":"https://api.github.com/users/avislova/received_events","type":"User","site_admin":false},"created_at":"2016-07-19T08:21:33Z","updated_at":"2016-07-19T08:21:33Z","body":"Great, that cleared things up for me and I got it working now.\n\nThanks a lot!\n\nOn Sun, Jul 17, 2016 at 1:17 AM, Thomas Kluyver <notifications@github.com>\nwrote:\n\n> To clarify a bit, there are two main ways to install IRkernel: using\n> CRAN+Github (as in the instructions on http://irkernel.github.io/), or as\n> a conda package called r-irkernel.\n>\n> There is also a conda package of R itself, and if you install r-irkernel\n> with conda, it will install and use conda's version of R. So if you already\n> have another R installation which you want to use IRkernel with, you should\n> follow the CRAN+Github install method to install IRkernel into that R.\n>\n> The error you originally posted, and this issue as a whole, is about\n> installing something with the CRAN+Github method, but now you seem to have\n> tried the Anaconda route. What problem are you encountering with that?\n>\n> —\n> You are receiving this because you commented.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/IRkernel/IRkernel/issues/298#issuecomment-233177035>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/ATIemnwXvH3Uq8FduuQvfh5UOKfaNdp_ks5qWg88gaJpZM4IJDyL>\n> .\n>\n"}}
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