{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe/issues/522","repository_url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe","labels_url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe/issues/522/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe/issues/522/comments","events_url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe/issues/522/events","html_url":"https://github.com/PacificBiosciences/pbsmrtpipe/issues/522","id":180144594,"number":522,"title":"Remove pbcore and fabric dependencies","user":{"login":"mpkocher","id":868552,"avatar_url":"https://avatars.githubusercontent.com/u/868552?v=3","gravatar_id":"","url":"https://api.github.com/users/mpkocher","html_url":"https://github.com/mpkocher","followers_url":"https://api.github.com/users/mpkocher/followers","following_url":"https://api.github.com/users/mpkocher/following{/other_user}","gists_url":"https://api.github.com/users/mpkocher/gists{/gist_id}","starred_url":"https://api.github.com/users/mpkocher/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mpkocher/subscriptions","organizations_url":"https://api.github.com/users/mpkocher/orgs","repos_url":"https://api.github.com/users/mpkocher/repos","events_url":"https://api.github.com/users/mpkocher/events{/privacy}","received_events_url":"https://api.github.com/users/mpkocher/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-09-29T19:48:21Z","updated_at":"2016-09-30T03:00:20Z","closed_at":null,"body":"1. pbcore requires both h5py and pysam. Since this is only used for testing using, this should be removed, or copy FastaIO from pbcore. Not optimal, but the overhead of installing h5py and pysam (whose features are never used) doesn't really make sense. \r\n\r\n2. fabric is only used for testing and could easily be removed\r\n\r\nIt's also useful to do an inventory of the remain REQ dependendencies to see if they can be streamlined"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe/issues/comments/250647421","html_url":"https://github.com/PacificBiosciences/pbsmrtpipe/issues/522#issuecomment-250647421","issue_url":"https://api.github.com/repos/PacificBiosciences/pbsmrtpipe/issues/522","id":250647421,"user":{"login":"mpkocher","id":868552,"avatar_url":"https://avatars.githubusercontent.com/u/868552?v=3","gravatar_id":"","url":"https://api.github.com/users/mpkocher","html_url":"https://github.com/mpkocher","followers_url":"https://api.github.com/users/mpkocher/followers","following_url":"https://api.github.com/users/mpkocher/following{/other_user}","gists_url":"https://api.github.com/users/mpkocher/gists{/gist_id}","starred_url":"https://api.github.com/users/mpkocher/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mpkocher/subscriptions","organizations_url":"https://api.github.com/users/mpkocher/orgs","repos_url":"https://api.github.com/users/mpkocher/repos","events_url":"https://api.github.com/users/mpkocher/events{/privacy}","received_events_url":"https://api.github.com/users/mpkocher/received_events","type":"User","site_admin":false},"created_at":"2016-09-30T03:00:20Z","updated_at":"2016-09-30T03:00:20Z","body":"There isn't a compelling reason. This was for historical development reasons and was used to more concrete examples to communicate the design."}}
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