{"push_id":1337535634,"size":2,"distinct_size":2,"ref":"refs/heads/master","head":"db9457a54a65446be3e0ceae0509aedebacc06d8","before":"6c8618cfee963e2167100cb0b293aedf85f32dcf","commits":[{"sha":"53440fdf77ff3d44e4f058a2b35014a41defbd9d","author":{"name":"Yuan Li","email":"d7db099832fd154bab5e3701571d638eed97d6a8@pacificbiosciences.com"},"message":"Disable CMP.H5 output in 3.0.\n\npbalign NO longer supports producing cmp.h5 file as output\nin 3.0, because blasr SAM output cigar string is now computed\nin a different coordinate (changed from within subread to\nunrolled zmw sequence).\nPipeline `pbalign bax.h5 ref.fasta out.cmp.h5 --forQuiver`\ncan be replaced by first converting bax.h5 to subreads.bam\nvia `bax2bam`, and then call `pbalign subreads.bam ref.fasta aln.bam`\n\nUpdated version number.\n\nDeleted code under forquiverservice/.","distinct":true,"url":"https://api.github.com/repos/PacificBiosciences/pbalign/commits/53440fdf77ff3d44e4f058a2b35014a41defbd9d"},{"sha":"db9457a54a65446be3e0ceae0509aedebacc06d8","author":{"name":"Yuan Li","email":"d7db099832fd154bab5e3701571d638eed97d6a8@pacificbiosciences.com"},"message":"Merge pull request #52 from ylipacbio/rm-cmph5-output\n\nDisable CMP.H5 output in 3.0.","distinct":true,"url":"https://api.github.com/repos/PacificBiosciences/pbalign/commits/db9457a54a65446be3e0ceae0509aedebacc06d8"}]}
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