{"push_id":1406816141,"size":1,"distinct_size":1,"ref":"refs/heads/doc-cli","head":"fc1bdab8619f227668d348084c8b7a097fa75f60","before":"403aab885f4894d1a0531ad3cc00cd9e4e1dd108","commits":[{"sha":"fc1bdab8619f227668d348084c8b7a097fa75f60","author":{"name":"Frank Austin Nothaft","email":"d9347962c16e697d97aca23107f7a15117076855@alumni.stanford.edu"},"message":"Clean up CLI operation categories and names, and add documentation for CLI.\n\n* Removed CalculateDepth command.\n* Clean up argument doc in TransformFeatures.\n* Move OUTPUT to an option for Flagstat.\n* Remove some output saving arguments in the View command that don't exactly\n  make sense.\n* Remove unused Vcf2ADAM/ADAM2Vcf -dict option and\n  `org.bdgenomics.adam.cli.DictionaryCommand` trait.\n* Remove WigFix2ADAM command.\n* Move away from ParquetLoadSaveArgs.\n* Move reads2coverage to actions.\n* Reads2Coverage does not only write to Parquet, so clean up docs.\n* Clean up fragments<->reads argument names.","distinct":true,"url":"https://api.github.com/repos/fnothaft/adam/commits/fc1bdab8619f227668d348084c8b7a097fa75f60"}]}
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