{"action":"created","issue":{"url":"https://api.github.com/repos/hammerlab/biokepi/issues/247","repository_url":"https://api.github.com/repos/hammerlab/biokepi","labels_url":"https://api.github.com/repos/hammerlab/biokepi/issues/247/labels{/name}","comments_url":"https://api.github.com/repos/hammerlab/biokepi/issues/247/comments","events_url":"https://api.github.com/repos/hammerlab/biokepi/issues/247/events","html_url":"https://github.com/hammerlab/biokepi/issues/247","id":149644408,"number":247,"title":"seq2hla installation fails","user":{"login":"arahuja","id":455755,"avatar_url":"https://avatars.githubusercontent.com/u/455755?v=3","gravatar_id":"","url":"https://api.github.com/users/arahuja","html_url":"https://github.com/arahuja","followers_url":"https://api.github.com/users/arahuja/followers","following_url":"https://api.github.com/users/arahuja/following{/other_user}","gists_url":"https://api.github.com/users/arahuja/gists{/gist_id}","starred_url":"https://api.github.com/users/arahuja/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arahuja/subscriptions","organizations_url":"https://api.github.com/users/arahuja/orgs","repos_url":"https://api.github.com/users/arahuja/repos","events_url":"https://api.github.com/users/arahuja/events{/privacy}","received_events_url":"https://api.github.com/users/arahuja/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":9,"created_at":"2016-04-20T03:19:33Z","updated_at":"2016-04-20T18:18:02Z","closed_at":null,"body":"stdout\r\n```\r\nChecking for available remotes: rsync and local, git, mercurial.\r\n  - you won't be able to use darcs repositories unless you install the darcs\r\n    command on your system.\r\n\r\n\r\n=-=- Fetching repository information =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=\r\n[biopam: git]\r\n[biopam: git]\r\n[biopam: git]\r\n[biopam: git]\r\n[biopam: git]\r\n[biopam: git]\r\n[biopam] https://github.com/solvuu/biopam.git updated\r\nOpamGlobals.Exit(66)\r\n```\r\n\r\nstderr \r\n```\r\n[WARNING] External solver failed with inconsistent return value. Request saved\r\n          to\r\n          \"/demeter/scratch/ahujaa01/ksinai-demeter/biopam/opam_dir/.opam/log/solver-error-33663-1.cudf\"\r\n[ERROR] External solver failure, please fix your installation and check\r\n        /demeter/scratch/ahujaa01/ksinai-demeter/biopam/opam_dir/.opam/config\r\n        and variable $OPAMEXTERNALSOLVER.\r\n        You may also retry with option --use-internal-solver\r\n[ERROR] Initialisation failed\r\n```\r\n\r\nThis seems like it is relying on a biokepi managed `opam` as opposed to the one installed on the machine. Is there other config needed?"},"comment":{"url":"https://api.github.com/repos/hammerlab/biokepi/issues/comments/212542434","html_url":"https://github.com/hammerlab/biokepi/issues/247#issuecomment-212542434","issue_url":"https://api.github.com/repos/hammerlab/biokepi/issues/247","id":212542434,"user":{"login":"arahuja","id":455755,"avatar_url":"https://avatars.githubusercontent.com/u/455755?v=3","gravatar_id":"","url":"https://api.github.com/users/arahuja","html_url":"https://github.com/arahuja","followers_url":"https://api.github.com/users/arahuja/followers","following_url":"https://api.github.com/users/arahuja/following{/other_user}","gists_url":"https://api.github.com/users/arahuja/gists{/gist_id}","starred_url":"https://api.github.com/users/arahuja/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arahuja/subscriptions","organizations_url":"https://api.github.com/users/arahuja/orgs","repos_url":"https://api.github.com/users/arahuja/repos","events_url":"https://api.github.com/users/arahuja/events{/privacy}","received_events_url":"https://api.github.com/users/arahuja/received_events","type":"User","site_admin":false},"created_at":"2016-04-20T18:18:02Z","updated_at":"2016-04-20T18:18:02Z","body":"> @arahuja do you have aspcud in your path?\r\n\r\n@smondet I do, would that affect something?"}}