{"action":"created","issue":{"url":"https://api.github.com/repos/johnlees/seer/issues/30","repository_url":"https://api.github.com/repos/johnlees/seer","labels_url":"https://api.github.com/repos/johnlees/seer/issues/30/labels{/name}","comments_url":"https://api.github.com/repos/johnlees/seer/issues/30/comments","events_url":"https://api.github.com/repos/johnlees/seer/issues/30/events","html_url":"https://github.com/johnlees/seer/issues/30","id":148246127,"number":30,"title":"kmds error","user":{"login":"shimbalama","id":17915057,"avatar_url":"https://avatars.githubusercontent.com/u/17915057?v=3","gravatar_id":"","url":"https://api.github.com/users/shimbalama","html_url":"https://github.com/shimbalama","followers_url":"https://api.github.com/users/shimbalama/followers","following_url":"https://api.github.com/users/shimbalama/following{/other_user}","gists_url":"https://api.github.com/users/shimbalama/gists{/gist_id}","starred_url":"https://api.github.com/users/shimbalama/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shimbalama/subscriptions","organizations_url":"https://api.github.com/users/shimbalama/orgs","repos_url":"https://api.github.com/users/shimbalama/repos","events_url":"https://api.github.com/users/shimbalama/events{/privacy}","received_events_url":"https://api.github.com/users/shimbalama/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/johnlees/seer/labels/compiler","name":"compiler","color":"0e8a16"}],"state":"closed","locked":false,"assignee":{"login":"johnlees","id":6331837,"avatar_url":"https://avatars.githubusercontent.com/u/6331837?v=3","gravatar_id":"","url":"https://api.github.com/users/johnlees","html_url":"https://github.com/johnlees","followers_url":"https://api.github.com/users/johnlees/followers","following_url":"https://api.github.com/users/johnlees/following{/other_user}","gists_url":"https://api.github.com/users/johnlees/gists{/gist_id}","starred_url":"https://api.github.com/users/johnlees/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/johnlees/subscriptions","organizations_url":"https://api.github.com/users/johnlees/orgs","repos_url":"https://api.github.com/users/johnlees/repos","events_url":"https://api.github.com/users/johnlees/events{/privacy}","received_events_url":"https://api.github.com/users/johnlees/received_events","type":"User","site_admin":false},"milestone":null,"comments":9,"created_at":"2016-04-14T04:02:36Z","updated_at":"2016-05-16T23:19:08Z","closed_at":"2016-05-16T10:46:56Z","body":"Hi,\r\n\r\nI tried to run kmds as per the updated instructions and received the following error:\r\n\r\n$ kmds -p metadata.pheno --mds_concat subsampled_matrices.txt -o all_structure --threads 16 --write_distances\r\n\r\nkmds: control for population structure\r\nDetected binary phenotype\r\nReading subsampled matrices from subsampled_matrices.txt\r\nJoined matrix 1\r\nDistance matrix calculated in: 0.000732998 s\r\n\r\nIntel MKL ERROR: Parameter 10 was incorrect on entry to DGEMM .\r\n\r\nIntel MKL ERROR: Parameter 10 was incorrect on entry to DGEMM .\r\n\r\nIntel MKL ERROR: Parameter 2 was incorrect on entry to DSYEVD.\r\n\r\nIntel MKL ERROR: Parameter 2 was incorrect on entry to DSYEV.\r\nterminate called after throwing an instance of 'std::runtime_error'\r\n  what():  Could not calculate eignvalues of B matrix in metric MDS\r\nAborted (core dumped)"},"comment":{"url":"https://api.github.com/repos/johnlees/seer/issues/comments/219576850","html_url":"https://github.com/johnlees/seer/issues/30#issuecomment-219576850","issue_url":"https://api.github.com/repos/johnlees/seer/issues/30","id":219576850,"user":{"login":"andersgs","id":3836603,"avatar_url":"https://avatars.githubusercontent.com/u/3836603?v=3","gravatar_id":"","url":"https://api.github.com/users/andersgs","html_url":"https://github.com/andersgs","followers_url":"https://api.github.com/users/andersgs/followers","following_url":"https://api.github.com/users/andersgs/following{/other_user}","gists_url":"https://api.github.com/users/andersgs/gists{/gist_id}","starred_url":"https://api.github.com/users/andersgs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andersgs/subscriptions","organizations_url":"https://api.github.com/users/andersgs/orgs","repos_url":"https://api.github.com/users/andersgs/repos","events_url":"https://api.github.com/users/andersgs/events{/privacy}","received_events_url":"https://api.github.com/users/andersgs/received_events","type":"User","site_admin":false},"created_at":"2016-05-16T23:19:08Z","updated_at":"2016-05-16T23:19:08Z","body":"Thank you for the script, John. I'll give it a go.\r\n\r\nI am running RHEL7 (Red Hat). "}}