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Every test class has been tested independently from the others to guarantee these dependencies do not apply. In order to run the tests this way, please use the following commands:\r\n\r\n```\r\nfor i in `find src/test/java/uk/ac/ebi/eva/pipeline/io -name \"*.java\" | rev | cut -d\"/\" -f1 | rev | cut -d\".\" -f1` ; do mvn test -Dtest=$i ; done\r\n```\r\n\r\nand\r\n\r\n```\r\nfor i in `find src/test/java/uk/ac/ebi/eva/pipeline/jobs -name \"*.java\" | rev | cut -d\"/\" -f1 | rev | cut -d\".\" -f1` ; do mvn test -Dtest=$i ; done\r\n```","created_at":"2016-10-13T10:34:50Z","updated_at":"2016-10-14T14:10:29Z","closed_at":null,"merged_at":null,"merge_commit_sha":"5af1c3515b224b6c07350425dbe7b0a5886d308f","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/EBIvariation/eva-pipeline/pulls/29/commits","review_comments_url":"https://api.github.com/repos/EBIvariation/eva-pipeline/pulls/29/comments","review_comment_url":"https://api.github.com/repos/EBIvariation/eva-pipeline/pulls/comments{/number}","comments_url":"https://api.github.com/repos/EBIvariation/eva-pipeline/issues/29/comments","statuses_url":"https://api.github.com/repos/EBIvariation/eva-pipeline/statuses/12b7f6595cb85ab46f48b0067035f236814c53d9","head":{"label":"cyenyxe:test-no-dependencies","ref":"test-no-dependencies","sha":"12b7f6595cb85ab46f48b0067035f236814c53d9","user":{"login":"cyenyxe","id":1433407,"avatar_url":"https://avatars.githubusercontent.com/u/1433407?v=3","gravatar_id":"","url":"https://api.github.com/users/cyenyxe","html_url":"https://github.com/cyenyxe","followers_url":"https://api.github.com/users/cyenyxe/followers","following_url":"https://api.github.com/users/cyenyxe/following{/other_user}","gists_url":"https://api.github.com/users/cyenyxe/gists{/gist_id}","starred_url":"https://api.github.com/users/cyenyxe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cyenyxe/subscriptions","organizations_url":"https://api.github.com/users/cyenyxe/orgs","repos_url":"https://api.github.com/users/cyenyxe/repos","events_url":"https://api.github.com/users/cyenyxe/events{/privacy}","received_events_url":"https://api.github.com/users/cyenyxe/received_events","type":"User","site_admin":false},"repo":{"id":66083942,"name":"eva-pipeline","full_name":"cyenyxe/eva-pipeline","owner":{"login":"cyenyxe","id":1433407,"avatar_url":"https://avatars.githubusercontent.com/u/1433407?v=3","gravatar_id":"","url":"https://api.github.com/users/cyenyxe","html_url":"https://github.com/cyenyxe","followers_url":"https://api.github.com/users/cyenyxe/followers","following_url":"https://api.github.com/users/cyenyxe/following{/other_user}","gists_url":"https://api.github.com/users/cyenyxe/gists{/gist_id}","starred_url":"https://api.github.com/users/cyenyxe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cyenyxe/subscriptions","organizations_url":"https://api.github.com/users/cyenyxe/orgs","repos_url":"https://api.github.com/users/cyenyxe/repos","events_url":"https://api.github.com/users/cyenyxe/events{/privacy}","received_events_url":"https://api.github.com/users/cyenyxe/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/cyenyxe/eva-pipeline","description":"Pipeline 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