{"action":"created","issue":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1102","repository_url":"https://api.github.com/repos/bigdatagenomics/adam","labels_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1102/labels{/name}","comments_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1102/comments","events_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1102/events","html_url":"https://github.com/bigdatagenomics/adam/issues/1102","id":169797964,"number":1102,"title":"add -single file output option to ADAM2Vcf","user":{"login":"jpdna","id":7423296,"avatar_url":"https://avatars.githubusercontent.com/u/7423296?v=3","gravatar_id":"","url":"https://api.github.com/users/jpdna","html_url":"https://github.com/jpdna","followers_url":"https://api.github.com/users/jpdna/followers","following_url":"https://api.github.com/users/jpdna/following{/other_user}","gists_url":"https://api.github.com/users/jpdna/gists{/gist_id}","starred_url":"https://api.github.com/users/jpdna/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jpdna/subscriptions","organizations_url":"https://api.github.com/users/jpdna/orgs","repos_url":"https://api.github.com/users/jpdna/repos","events_url":"https://api.github.com/users/jpdna/events{/privacy}","received_events_url":"https://api.github.com/users/jpdna/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/bigdatagenomics/adam/labels/duplicate","name":"duplicate","color":"cccccc"}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-08-07T14:07:41Z","updated_at":"2016-08-08T04:07:26Z","closed_at":"2016-08-08T04:07:26Z","body":"Add a `-single` option to `ADAM2Vcf` to output a single VCF file.\r\nI assume this can be done similarly to how it is done currently for BAM output.\r\n\r\n@fnothaft - let us know what you think the best approach is here.  I am willing to work on porting over to VCF, but I know this was a finicky bit of code, so if you'd rather do it or if you have suggestions let me know.\r\n\r\nMy near term goal here is to examine the VCF transformations/roundtrips using each of Parquet and HBase data stores, both of which can make use of this same code for VCF output.\r\n\r\n "},"comment":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/comments/238137885","html_url":"https://github.com/bigdatagenomics/adam/issues/1102#issuecomment-238137885","issue_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1102","id":238137885,"user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"created_at":"2016-08-08T04:07:26Z","updated_at":"2016-08-08T04:07:26Z","body":"I'm going to close this as a dupe of #1009. Thanks for opening it; it gave me the impetus to get back to fixing this. I should have a PR tomorrow."}}
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