{"action":"created","issue":{"url":"https://api.github.com/repos/compomics/searchgui/issues/122","repository_url":"https://api.github.com/repos/compomics/searchgui","labels_url":"https://api.github.com/repos/compomics/searchgui/issues/122/labels{/name}","comments_url":"https://api.github.com/repos/compomics/searchgui/issues/122/comments","events_url":"https://api.github.com/repos/compomics/searchgui/issues/122/events","html_url":"https://github.com/compomics/searchgui/issues/122","id":185418315,"number":122,"title":"Error searching with Andromeda","user":{"login":"armonyG","id":23078645,"avatar_url":"https://avatars.githubusercontent.com/u/23078645?v=3","gravatar_id":"","url":"https://api.github.com/users/armonyG","html_url":"https://github.com/armonyG","followers_url":"https://api.github.com/users/armonyG/followers","following_url":"https://api.github.com/users/armonyG/following{/other_user}","gists_url":"https://api.github.com/users/armonyG/gists{/gist_id}","starred_url":"https://api.github.com/users/armonyG/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/armonyG/subscriptions","organizations_url":"https://api.github.com/users/armonyG/orgs","repos_url":"https://api.github.com/users/armonyG/repos","events_url":"https://api.github.com/users/armonyG/events{/privacy}","received_events_url":"https://api.github.com/users/armonyG/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/compomics/searchgui/labels/help%20wanted","name":"help wanted","color":"159818"}],"state":"open","locked":false,"assignee":{"login":"mvaudel","id":11632644,"avatar_url":"https://avatars.githubusercontent.com/u/11632644?v=3","gravatar_id":"","url":"https://api.github.com/users/mvaudel","html_url":"https://github.com/mvaudel","followers_url":"https://api.github.com/users/mvaudel/followers","following_url":"https://api.github.com/users/mvaudel/following{/other_user}","gists_url":"https://api.github.com/users/mvaudel/gists{/gist_id}","starred_url":"https://api.github.com/users/mvaudel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvaudel/subscriptions","organizations_url":"https://api.github.com/users/mvaudel/orgs","repos_url":"https://api.github.com/users/mvaudel/repos","events_url":"https://api.github.com/users/mvaudel/events{/privacy}","received_events_url":"https://api.github.com/users/mvaudel/received_events","type":"User","site_admin":false},"assignees":[{"login":"mvaudel","id":11632644,"avatar_url":"https://avatars.githubusercontent.com/u/11632644?v=3","gravatar_id":"","url":"https://api.github.com/users/mvaudel","html_url":"https://github.com/mvaudel","followers_url":"https://api.github.com/users/mvaudel/followers","following_url":"https://api.github.com/users/mvaudel/following{/other_user}","gists_url":"https://api.github.com/users/mvaudel/gists{/gist_id}","starred_url":"https://api.github.com/users/mvaudel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvaudel/subscriptions","organizations_url":"https://api.github.com/users/mvaudel/orgs","repos_url":"https://api.github.com/users/mvaudel/repos","events_url":"https://api.github.com/users/mvaudel/events{/privacy}","received_events_url":"https://api.github.com/users/mvaudel/received_events","type":"User","site_admin":false}],"milestone":null,"comments":3,"created_at":"2016-10-26T14:56:05Z","updated_at":"2016-10-27T14:14:11Z","closed_at":null,"body":"Hello, when I try to search with Andromeda i get an error:\r\n\r\n![andromeda error](https://cloud.githubusercontent.com/assets/23078645/19728727/2d6bdcaa-9b9d-11e6-8bdf-0bf80841d2c5.png)\r\n\r\nThe report file say:\r\n\r\n> Wed Oct 26 16:47:26 IDT 2016        Processing QEP2_DFA_ECM_CL_pellet_BS3_1_051016.mgf with Andromeda.\r\n> \r\n> Start Search.\r\n> \r\n> Unhandled Exception: System.Exception: Exception during execution of external process: 8116\r\n>    at BaseLibS.Util.WorkDispatcher.ProcessSingleRunExternal(Int32 taskIndex, Int32 threadIndex)\r\n>    at BaseLibS.Util.WorkDispatcher.DoWork(Int32 taskIndex, Int32 threadIndex)\r\n>    at BaseLibS.Util.WorkDispatcher.Work(Object threadIndex)\r\n>    at System.Threading.ExecutionContext.RunInternal(ExecutionContext executionContext, ContextCallback callback, Object state, Boolean preserveSyncCtx)\r\n>    at System.Threading.ExecutionContext.Run(ExecutionContext executionContext, ContextCallback callback, Object state, Boolean preserveSyncCtx)\r\n>    at System.Threading.ExecutionContext.Run(ExecutionContext executionContext, ContextCallback callback, Object state)\r\n>    at System.Threading.ThreadHelper.ThreadStart(Object obj)\r\n> \r\n> \r\n> Wed Oct 26 16:53:52 IDT 2016        Andromeda finished for QEP2_DFA_ECM_CL_pellet_BS3_1_051016.apl (6 minutes 385 seconds).\r\n> \r\n> Wed Oct 26 16:53:52 IDT 2016        Could not find Andromeda .res file for QEP2_DFA_ECM_CL_pellet_BS3_1_051016.mgf.\r\n\r\nHaven't checked the rest but X! Tandem and OMSSA works.\r\n\r\nGadi"},"comment":{"url":"https://api.github.com/repos/compomics/searchgui/issues/comments/256653359","html_url":"https://github.com/compomics/searchgui/issues/122#issuecomment-256653359","issue_url":"https://api.github.com/repos/compomics/searchgui/issues/122","id":256653359,"user":{"login":"hbarsnes","id":13151214,"avatar_url":"https://avatars.githubusercontent.com/u/13151214?v=3","gravatar_id":"","url":"https://api.github.com/users/hbarsnes","html_url":"https://github.com/hbarsnes","followers_url":"https://api.github.com/users/hbarsnes/followers","following_url":"https://api.github.com/users/hbarsnes/following{/other_user}","gists_url":"https://api.github.com/users/hbarsnes/gists{/gist_id}","starred_url":"https://api.github.com/users/hbarsnes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbarsnes/subscriptions","organizations_url":"https://api.github.com/users/hbarsnes/orgs","repos_url":"https://api.github.com/users/hbarsnes/repos","events_url":"https://api.github.com/users/hbarsnes/events{/privacy}","received_events_url":"https://api.github.com/users/hbarsnes/received_events","type":"User","site_admin":false},"created_at":"2016-10-27T14:14:11Z","updated_at":"2016-10-27T14:14:11Z","body":"Hi,\r\n\r\nThe problem seems to be the comma in the enzyme name, as Andromeda supports the input of multiple enzymes, (presumably) separated by comma. The enzyme name has already been altered for the next PeptideShaker release which seems to solve the problem. In the meantime please use one or more of the other search engines supported in SearchGUI. \r\n\r\nWe'll let you know when the new PeptideShaker version is available.\r\n\r\nBest regards,\r\nHarald"}}
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