{"action":"created","issue":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/646","labels_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/646/labels{/name}","comments_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/646/comments","events_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/646/events","html_url":"https://github.com/markovmodel/PyEMMA/issues/646","id":121282514,"number":646,"title":"cannot install latest devel version ","user":{"login":"gph82","id":7518004,"avatar_url":"https://avatars.githubusercontent.com/u/7518004?v=3","gravatar_id":"","url":"https://api.github.com/users/gph82","html_url":"https://github.com/gph82","followers_url":"https://api.github.com/users/gph82/followers","following_url":"https://api.github.com/users/gph82/following{/other_user}","gists_url":"https://api.github.com/users/gph82/gists{/gist_id}","starred_url":"https://api.github.com/users/gph82/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gph82/subscriptions","organizations_url":"https://api.github.com/users/gph82/orgs","repos_url":"https://api.github.com/users/gph82/repos","events_url":"https://api.github.com/users/gph82/events{/privacy}","received_events_url":"https://api.github.com/users/gph82/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/markovmodel/PyEMMA/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":10,"created_at":"2015-12-09T16:17:07Z","updated_at":"2016-01-11T19:57:29Z","closed_at":"2016-01-11T18:04:19Z","body":"With the current devel version (https://github.com/markovmodel/PyEMMA/commit/65282e810bc9642b487051ccaf6df80770a3a813) and with both python 2.7 and 3.5 (using miniconda and miniconda3, respectively)  python setup.py develop produces this when trying to install psutils:\r\n\r\n```\r\nSearching for psutil>=3.1.1\r\nReading https://pypi.python.org/simple/psutil/\r\nBest match: psutil 3.3.0\r\nDownloading https://pypi.python.org/packages/source/p/psutil/psutil-3.3.0.tar.gz#md5=0625db01ea46417308db94cc59362b65\r\nProcessing psutil-3.3.0.tar.gz\r\nWriting /tmp/easy_install-IS2ZIY/psutil-3.3.0/setup.cfg\r\nRunning psutil-3.3.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-IS2ZIY/psutil-3.3.0/egg-dist-tmp-7RqitD\r\nTraceback (most recent call last):\r\n  File \"setup.py\", line 249, in <module>\r\n    setup(**metadata)\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/distutils/core.py\", line 151, in setup\r\n    dist.run_commands()\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/distutils/dist.py\", line 953, in run_commands\r\n    self.run_command(cmd)\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/distutils/dist.py\", line 972, in run_command\r\n    cmd_obj.run()\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/develop.py\", line 32, in run\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/develop.py\", line 132, in install_for_development\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/easy_install.py\", line 718, in process_distribution\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/pkg_resources/__init__.py\", line 843, in resolve\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/pkg_resources/__init__.py\", line 1088, in best_match\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/pkg_resources/__init__.py\", line 1100, in obtain\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/easy_install.py\", line 638, in easy_install\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/easy_install.py\", line 668, in install_item\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/easy_install.py\", line 851, in install_eggs\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/easy_install.py\", line 1079, in build_and_install\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/command/easy_install.py\", line 1065, in run_setup\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 240, in run_setup\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/contextlib.py\", line 35, in __exit__\r\n    self.gen.throw(type, value, traceback)\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 193, in setup_context\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/contextlib.py\", line 35, in __exit__\r\n    self.gen.throw(type, value, traceback)\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 152, in save_modules\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 126, in __exit__\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\n  File \"/home/mi/gph82/miniconda/lib/python2.7/site-packages/setuptools-18.5-py2.7.egg/setuptools/sandbox.py\", line 110, in dump\r\nMemoryError\r\n```\r\n\r\nAny ideas?"},"comment":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/comments/170671436","html_url":"https://github.com/markovmodel/PyEMMA/issues/646#issuecomment-170671436","issue_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/646","id":170671436,"user":{"login":"rmcgibbo","id":641278,"avatar_url":"https://avatars.githubusercontent.com/u/641278?v=3","gravatar_id":"","url":"https://api.github.com/users/rmcgibbo","html_url":"https://github.com/rmcgibbo","followers_url":"https://api.github.com/users/rmcgibbo/followers","following_url":"https://api.github.com/users/rmcgibbo/following{/other_user}","gists_url":"https://api.github.com/users/rmcgibbo/gists{/gist_id}","starred_url":"https://api.github.com/users/rmcgibbo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rmcgibbo/subscriptions","organizations_url":"https://api.github.com/users/rmcgibbo/orgs","repos_url":"https://api.github.com/users/rmcgibbo/repos","events_url":"https://api.github.com/users/rmcgibbo/events{/privacy}","received_events_url":"https://api.github.com/users/rmcgibbo/received_events","type":"User","site_admin":false},"created_at":"2016-01-11T19:57:29Z","updated_at":"2016-01-11T19:57:29Z","body":"Also, if you're looking for a better solution for developers/users that want to get the latest head of the devel branch for testing, but would prefer not to compile from source, John was working on https://github.com/omnia-md/conda-dev-recipes over the weekend. The idea is to have a repo with conda recipes that build the development HEAD of different projects, and all the recipes are triggered to automatically rebuild on a daily or twice daily schedule. So `conda install openmm-dev`, for example, will install the latest (modulo 12 or 24 hours) devel snapshot of OpenMM. So if that accomplishes your goals, you could add a recipe for `pyemma-dev` there."}}