{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis/issues/282","repository_url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis","labels_url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis/issues/282/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis/issues/282/comments","events_url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis/issues/282/events","html_url":"https://github.com/PacificBiosciences/SMRT-Analysis/issues/282","id":164981475,"number":282,"title":"Packages in SMRT-Analysis","user":{"login":"danshu","id":9067238,"avatar_url":"https://avatars.githubusercontent.com/u/9067238?v=3","gravatar_id":"","url":"https://api.github.com/users/danshu","html_url":"https://github.com/danshu","followers_url":"https://api.github.com/users/danshu/followers","following_url":"https://api.github.com/users/danshu/following{/other_user}","gists_url":"https://api.github.com/users/danshu/gists{/gist_id}","starred_url":"https://api.github.com/users/danshu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/danshu/subscriptions","organizations_url":"https://api.github.com/users/danshu/orgs","repos_url":"https://api.github.com/users/danshu/repos","events_url":"https://api.github.com/users/danshu/events{/privacy}","received_events_url":"https://api.github.com/users/danshu/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-07-12T02:33:39Z","updated_at":"2016-07-12T09:15:18Z","closed_at":null,"body":"Hi,\r\n\r\nI have installed SMRT-Analysis and I used pbalign to polish my genome. However, the blasr called by pbalign seems didn't have other utils with it, for example, samtoh5.\r\nHere is the error message: \"samtoh5 returned a non-zero exit status./bin/sh: 1: samtoh5: not found\"\r\nI'm sure that I have blasr in the SMRT-Analysis. However, I can not find \"samtoh5\" by \"locate samtoh5\" in the SMRT-Analysis directories. Anyone can help?\r\n\r\nThanks,\r\nQuan"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis/issues/comments/231983380","html_url":"https://github.com/PacificBiosciences/SMRT-Analysis/issues/282#issuecomment-231983380","issue_url":"https://api.github.com/repos/PacificBiosciences/SMRT-Analysis/issues/282","id":231983380,"user":{"login":"danshu","id":9067238,"avatar_url":"https://avatars.githubusercontent.com/u/9067238?v=3","gravatar_id":"","url":"https://api.github.com/users/danshu","html_url":"https://github.com/danshu","followers_url":"https://api.github.com/users/danshu/followers","following_url":"https://api.github.com/users/danshu/following{/other_user}","gists_url":"https://api.github.com/users/danshu/gists{/gist_id}","starred_url":"https://api.github.com/users/danshu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/danshu/subscriptions","organizations_url":"https://api.github.com/users/danshu/orgs","repos_url":"https://api.github.com/users/danshu/repos","events_url":"https://api.github.com/users/danshu/events{/privacy}","received_events_url":"https://api.github.com/users/danshu/received_events","type":"User","site_admin":false},"created_at":"2016-07-12T09:15:18Z","updated_at":"2016-07-12T09:15:18Z","body":"I'm using SMRT-Analysis v 3.0+. Thanks for your explanation, which is very useful."}}
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