{"action":"created","issue":{"url":"https://api.github.com/repos/neufeld/pandaseq/issues/58","repository_url":"https://api.github.com/repos/neufeld/pandaseq","labels_url":"https://api.github.com/repos/neufeld/pandaseq/issues/58/labels{/name}","comments_url":"https://api.github.com/repos/neufeld/pandaseq/issues/58/comments","events_url":"https://api.github.com/repos/neufeld/pandaseq/issues/58/events","html_url":"https://github.com/neufeld/pandaseq/issues/58","id":190704217,"number":58,"title":"BADID Issue","user":{"login":"SilentGene","id":15141939,"avatar_url":"https://avatars.githubusercontent.com/u/15141939?v=3","gravatar_id":"","url":"https://api.github.com/users/SilentGene","html_url":"https://github.com/SilentGene","followers_url":"https://api.github.com/users/SilentGene/followers","following_url":"https://api.github.com/users/SilentGene/following{/other_user}","gists_url":"https://api.github.com/users/SilentGene/gists{/gist_id}","starred_url":"https://api.github.com/users/SilentGene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SilentGene/subscriptions","organizations_url":"https://api.github.com/users/SilentGene/orgs","repos_url":"https://api.github.com/users/SilentGene/repos","events_url":"https://api.github.com/users/SilentGene/events{/privacy}","received_events_url":"https://api.github.com/users/SilentGene/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-11-21T12:35:39Z","updated_at":"2016-11-21T14:18:45Z","closed_at":null,"body":"Hi,\r\nI'v encountered a BADID issue when deal with my data:\r\nThe command I used like this:\r\n`$ pandaseq -6 -f 1.fq -r 2.fq -T 4 -w out.fa`\r\nand I got an error message:\r\n\r\n> ERR     BADID   FCC5WLUACXX:::6:1101:1444:1965:TAATGTTG FCC5WLUACXX:6:1101:1444:1965#TAATGTTG/1\r\n> ***** Something is wrong with this ID. If tags are absent, try passing the -B option.\r\n> ***** Consult `pandaseq-checkid \"FCC5WLUACXX:6:1101:1444:1965#TAATGTTG/1\"` to get an idea of the problem..\r\n\r\nThen I run the `pandaseq-checkid` command, and I got:\r\n\r\n> FCC5WLUACXX:6:1101:1444:1965#TAATGTTG/1\r\n>                                      ^\r\n>         BAD\r\n>         instrument = \"FCC5WLUACXX\"\r\n>         run = \"\"\r\n>         flowcell = \"\"\r\n>         lane = 6\r\n>         tile = 1101\r\n>         x = 1444\r\n>         y = 1965\r\n>         tag = \"TAATGTTG\"\r\n>         generator = CASAVA 1.4-1.6\r\n\r\nMy Fastq file looks like this:\r\n\r\n> @FCC5WLUACXX:6:1101:1444:1965#TAATGTTG/1\r\n> NTAACAGCCCTTTTTTTTCAGCTTCTGTGTGTCCCCATCCTTCTTTTAGGTCAACGCCAAGTTCTCGGTGCAAATCATTCATCTTTTTTATAGAATCATG\r\n> +\r\n> BS\\ceeeegggggiiiiiihhhiiiiigighhhiiihiiiiiihiiifhicghihiggeec`bddcccaacccccccccdcddcccccacccbbcccccc\r\n> \r\n\r\nI totally have no idea what can I do next, as I've already add `-6` option in the command line.\r\nhelp."},"comment":{"url":"https://api.github.com/repos/neufeld/pandaseq/issues/comments/261949897","html_url":"https://github.com/neufeld/pandaseq/issues/58#issuecomment-261949897","issue_url":"https://api.github.com/repos/neufeld/pandaseq/issues/58","id":261949897,"user":{"login":"SilentGene","id":15141939,"avatar_url":"https://avatars.githubusercontent.com/u/15141939?v=3","gravatar_id":"","url":"https://api.github.com/users/SilentGene","html_url":"https://github.com/SilentGene","followers_url":"https://api.github.com/users/SilentGene/followers","following_url":"https://api.github.com/users/SilentGene/following{/other_user}","gists_url":"https://api.github.com/users/SilentGene/gists{/gist_id}","starred_url":"https://api.github.com/users/SilentGene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SilentGene/subscriptions","organizations_url":"https://api.github.com/users/SilentGene/orgs","repos_url":"https://api.github.com/users/SilentGene/repos","events_url":"https://api.github.com/users/SilentGene/events{/privacy}","received_events_url":"https://api.github.com/users/SilentGene/received_events","type":"User","site_admin":false},"created_at":"2016-11-21T14:18:45Z","updated_at":"2016-11-21T14:18:45Z","body":"pandaseq 2.10\r\nMay because the version I used is too old? I think maybe I should update the software."}}
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