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I add a check to avoid\nuneccesary warning.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/c4606970cb0f0ecf179b015f30a53a6d0357833e"},{"sha":"d472148a14c7d6a6c1dda2c5204020c19de838a9","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Removed unused input argument from initCobraToolbox","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/d472148a14c7d6a6c1dda2c5204020c19de838a9"},{"sha":"2e9370b795cc0be71e38aeff646f92fa184cd8a0","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Standardized and cleaned the \"Define\" blocks in initCobraToolbox","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/2e9370b795cc0be71e38aeff646f92fa184cd8a0"},{"sha":"3a5eb1eeda7b9dcdc0e67ebeb143644cb6218a46","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Minor changes.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/3a5eb1eeda7b9dcdc0e67ebeb143644cb6218a46"},{"sha":"c290646b8bdb4b08e3936a5b2628c4a75c98fac1","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Changed file extension to avoid mcc parse error\n\nMCC parses all included .m files to search for dependencies. The renamed file is\nhas a .m extension, but is NOT a MATLAB script. As a result, MCC fails to parse\nthe file with numerious syntax errors. The fix is to rename the file itself and\nupdate it's name in the one function that makes use of it.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/c290646b8bdb4b08e3936a5b2628c4a75c98fac1"},{"sha":"6be3a91f99f1ab31d24ebe835e7be1cd6e6a5cc6","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Added missing parenthesis to fix syntax error","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/6be3a91f99f1ab31d24ebe835e7be1cd6e6a5cc6"},{"sha":"6102bc73567a4d65e511c93db294ea6180555ce4","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Added missing newlines in try/catch control structure","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/6102bc73567a4d65e511c93db294ea6180555ce4"},{"sha":"e30d55640b36eca4838115ba768d223148297f35","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Delete nonesense characters.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/e30d55640b36eca4838115ba768d223148297f35"},{"sha":"d5b8ee83077615cd274eaa0ee7a3d923a9ca6e15","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Deleted more nonesense characters.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/d5b8ee83077615cd274eaa0ee7a3d923a9ca6e15"},{"sha":"12b510f75376bc0a9258fdf665e88ef2e184b47b","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Added comment to 0-byte files\n\nmcc fails to compile because it will not add a 0-byte file to the CTF. These\n0-byte files appear to be either placeholders for code yet-to-be written (e.g.\ninstallSBMLToolbox.m) or unused (e.g temp.m). Rather than attempting to\ntrack down exactly how each is used, I add a comment line (\"% empty\") to make\ntheir size non-zero. This should be entirely safe.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/12b510f75376bc0a9258fdf665e88ef2e184b47b"},{"sha":"c2904eeaeffe6d00a61bdc6494d48ee7f181d901","author":{"name":"keithma","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Reverted to original version of initCobraToolbox\n\nThe reason for doing this is to isolate changes to initCobraToolbox and the\nbugfixes needed to compile a standalone in separate branches. This will make the\npull request easier to negotiate.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/c2904eeaeffe6d00a61bdc6494d48ee7f181d901"},{"sha":"f69c6b61a68244d4907ba43b0991d3d04317329c","author":{"name":"Ben Cousins","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"added missing negFluxAllowedFlag to reduceModel","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/f69c6b61a68244d4907ba43b0991d3d04317329c"},{"sha":"6e412367428aeb015988f3f10885b6ff0915a204","author":{"name":"Thierry Mondeel","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"This fixes disagreement in naming of columns and sheets between xls2model and writeCbModel so that xls files created using writeCbModel can now be read back into Matlab by xls2model without difficulties.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/6e412367428aeb015988f3f10885b6ff0915a204"},{"sha":"b1244a3207eb19e99430b146a1316d8c1ecda1ae","author":{"name":"Will Bryant","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Corrected charge assignment to be based on selected metabolites (selMets) rather than selected reactions (selRxns).","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/b1244a3207eb19e99430b146a1316d8c1ecda1ae"},{"sha":"f3939e17fb12b13ea70d4779da673120ef0b023e","author":{"name":"Will Bryant","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Corrected line for adding 'c' to subnetwork, as conditional assignment was based on original model having a variable 'r', rather than a variable 'c'.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/f3939e17fb12b13ea70d4779da673120ef0b023e"},{"sha":"5f6859f7ec5f5e24eb57f88ac73ac9cb561abf26","author":{"name":"Thierry Mondeel","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Commented out some output in addReaction which slows down and clutters reading of Excel files.\nSimilarly in changeGeneAssociation.","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/5f6859f7ec5f5e24eb57f88ac73ac9cb561abf26"},{"sha":"6766e020017f080b337e3d341cfa2b01f163ae87","author":{"name":"Thierry Mondeel","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"restore","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/6766e020017f080b337e3d341cfa2b01f163ae87"},{"sha":"36f2a8dd10449e282193ad58b0a7b49d8e586893","author":{"name":"Thierry Mondeel","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"Merge branch 'master' of https://github.com/ThierryMondeel/cobratoolbox","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/36f2a8dd10449e282193ad58b0a7b49d8e586893"},{"sha":"8b1981fb9cc8b3aa3ddab4dd3956e2273c5ddb88","author":{"name":"Andras Hartmann","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"message":"OptKnock fix - runs well without external constraint","distinct":true,"url":"https://api.github.com/repos/bertonoronha/cobratoolbox/commits/8b1981fb9cc8b3aa3ddab4dd3956e2273c5ddb88"}]}
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