{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/1563","repository_url":"https://api.github.com/repos/galaxyproject/galaxy","labels_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/1563/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/1563/comments","events_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/1563/events","html_url":"https://github.com/galaxyproject/galaxy/issues/1563","id":128142193,"number":1563,"title":"galaxy fails to run on Centos 6: sha256sum --strict not supported","user":{"login":"einon","id":1388868,"avatar_url":"https://avatars.githubusercontent.com/u/1388868?v=3","gravatar_id":"","url":"https://api.github.com/users/einon","html_url":"https://github.com/einon","followers_url":"https://api.github.com/users/einon/followers","following_url":"https://api.github.com/users/einon/following{/other_user}","gists_url":"https://api.github.com/users/einon/gists{/gist_id}","starred_url":"https://api.github.com/users/einon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/einon/subscriptions","organizations_url":"https://api.github.com/users/einon/orgs","repos_url":"https://api.github.com/users/einon/repos","events_url":"https://api.github.com/users/einon/events{/privacy}","received_events_url":"https://api.github.com/users/einon/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/galaxyproject/galaxy/labels/area/framework","name":"area/framework","color":"006b75"},{"url":"https://api.github.com/repos/galaxyproject/galaxy/labels/kind/bug","name":"kind/bug","color":"84b6eb"}],"state":"closed","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/galaxyproject/galaxy/milestones/1","html_url":"https://github.com/galaxyproject/galaxy/milestones/16.01","labels_url":"https://api.github.com/repos/galaxyproject/galaxy/milestones/1/labels","id":1340720,"number":1,"title":"16.01","description":"Tentative freeze date for 16.01","creator":{"login":"erasche","id":458683,"avatar_url":"https://avatars.githubusercontent.com/u/458683?v=3","gravatar_id":"","url":"https://api.github.com/users/erasche","html_url":"https://github.com/erasche","followers_url":"https://api.github.com/users/erasche/followers","following_url":"https://api.github.com/users/erasche/following{/other_user}","gists_url":"https://api.github.com/users/erasche/gists{/gist_id}","starred_url":"https://api.github.com/users/erasche/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/erasche/subscriptions","organizations_url":"https://api.github.com/users/erasche/orgs","repos_url":"https://api.github.com/users/erasche/repos","events_url":"https://api.github.com/users/erasche/events{/privacy}","received_events_url":"https://api.github.com/users/erasche/received_events","type":"User","site_admin":false},"open_issues":3,"closed_issues":361,"state":"open","created_at":"2015-10-06T16:36:51Z","updated_at":"2016-02-09T17:40:20Z","due_on":"2016-01-05T06:00:00Z","closed_at":null},"comments":13,"created_at":"2016-01-22T11:57:27Z","updated_at":"2016-02-09T22:34:18Z","closed_at":"2016-02-03T18:27:43Z","body":"Reported against ce3f2b9.\r\n\r\nGalaxy fails to run on CentOS 6 as the version of sha256sum bundled with this distribution does not support the --strict flag.\r\n\r\nTo repeat, on CentOS 6:\r\n\r\n```console\r\n # git clone https://github.com/galaxyproject/galaxy.git \r\n # cd galaxy\r\n # sh run.sh\r\n```\r\n\r\n ...resulting in the error when running scripts/common_startup.sh (line 98):\r\n\r\n```\r\nsha256sum: unrecognized option '--strict'\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/comments/182109409","html_url":"https://github.com/galaxyproject/galaxy/issues/1563#issuecomment-182109409","issue_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/1563","id":182109409,"user":{"login":"methylome","id":9466414,"avatar_url":"https://avatars.githubusercontent.com/u/9466414?v=3","gravatar_id":"","url":"https://api.github.com/users/methylome","html_url":"https://github.com/methylome","followers_url":"https://api.github.com/users/methylome/followers","following_url":"https://api.github.com/users/methylome/following{/other_user}","gists_url":"https://api.github.com/users/methylome/gists{/gist_id}","starred_url":"https://api.github.com/users/methylome/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/methylome/subscriptions","organizations_url":"https://api.github.com/users/methylome/orgs","repos_url":"https://api.github.com/users/methylome/repos","events_url":"https://api.github.com/users/methylome/events{/privacy}","received_events_url":"https://api.github.com/users/methylome/received_events","type":"User","site_admin":false},"created_at":"2016-02-09T22:34:18Z","updated_at":"2016-02-09T22:34:18Z","body":"Hi @mvdbeek,\r\n\r\nThanks a lot. I've tried get_tool_yml_from_gi.py, but got the following errors:\r\nTraceback (most recent call last):\r\n  File \"./get_tool_yml_from_gi.py\", line 261, in <module>\r\n    skip_tool_panel_section_name=options.skip_tool_panel_name)\r\n  File \"./get_tool_yml_from_gi.py\", line 35, in __init__\r\n    self.tool_panel_list_filtered = self.filter_tool_panel_list()\r\n  File \"./get_tool_yml_from_gi.py\", line 59, in filter_tool_panel_list\r\n    for tool in section[\"elems\"]:\r\nKeyError: 'elems'\r\n\r\nI think this is caused by the value of section:\r\n{u'panel_section_name': u'', u'config_file': u'/home/galaxy/dev/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/973fea5b4bdf/samtools_mpileup/samtools_mpileup.xml', u'description': u'SNP and indel caller', u'labels': [], u'panel_section_id': u'', u'version': u'0.0.3', u'link': u'/devgalaxy/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fdevteam%2Fsamtools_mpileup%2Fsamtools_mpileup%2F0.0.3', u'target': u'galaxy_main', u'min_width': -1, u'model_class': u'Tool', u'id': u'toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/0.0.3', u'name': u'MPileup'}"}}