{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/amigo/issues/412","repository_url":"https://api.github.com/repos/geneontology/amigo","labels_url":"https://api.github.com/repos/geneontology/amigo/issues/412/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/amigo/issues/412/comments","events_url":"https://api.github.com/repos/geneontology/amigo/issues/412/events","html_url":"https://github.com/geneontology/amigo/issues/412","id":193983418,"number":412,"title":"extension filter","user":{"login":"ValWood","id":7359272,"avatar_url":"https://avatars.githubusercontent.com/u/7359272?v=3","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"labels":[{"id":27023961,"url":"https://api.github.com/repos/geneontology/amigo/labels/duplicate","name":"duplicate","color":"cccccc","default":true}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-12-07T08:11:01Z","updated_at":"2016-12-07T18:17:30Z","closed_at":"2016-12-07T18:17:29Z","body":"\r\nI was trying to  contruct a query to answer a PomBase user question.\r\nRetrieve all kinases (or phosphatases)  with  known target/substrate annotations\r\n\r\nI don't understand the extension filter:\r\n\r\n![extension filter](https://cloud.githubusercontent.com/assets/7359272/20959488/2922b66a-bc53-11e6-9a20-353d22ef1557.jpg)\r\n\r\nIt presents lots of GO term filter options, but:\r\n \r\ni) GO terms are not the only thing in extensions (the  majority or our extensions are probably gene products)\r\nii) extensions are only meaningful when they  include the context provided by the relation. Without this information it isn't meaningful to provide a filter on anything else.... For example even 'process\" can be part of, happens during.\r\niii) because of the way the filters are presented (by > annotation) the terms which are presented aren't particularly useful (even if you knew how to use them)\r\n\r\n\r\nFor example, I could not figure out why we had \tso many extensions \r\n\"regulation of nitrogen compound metabolic process\"\r\n\r\nIt turns out they are from  substrate/part_of process connections to transcription\r\nhas_direct_input PomBase:SPBC19F8.07\r\npart of regulation of transcription from RNA polymerase II promoter\r\n\r\nMaybe there is a better way to present this filter to be useful to the general biological user?\r\n\r\n\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/geneontology/amigo/issues/comments/265527048","html_url":"https://github.com/geneontology/amigo/issues/412#issuecomment-265527048","issue_url":"https://api.github.com/repos/geneontology/amigo/issues/412","id":265527048,"user":{"login":"kltm","id":2687900,"avatar_url":"https://avatars.githubusercontent.com/u/2687900?v=3","gravatar_id":"","url":"https://api.github.com/users/kltm","html_url":"https://github.com/kltm","followers_url":"https://api.github.com/users/kltm/followers","following_url":"https://api.github.com/users/kltm/following{/other_user}","gists_url":"https://api.github.com/users/kltm/gists{/gist_id}","starred_url":"https://api.github.com/users/kltm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kltm/subscriptions","organizations_url":"https://api.github.com/users/kltm/orgs","repos_url":"https://api.github.com/users/kltm/repos","events_url":"https://api.github.com/users/kltm/events{/privacy}","received_events_url":"https://api.github.com/users/kltm/received_events","type":"User","site_admin":false},"created_at":"2016-12-07T18:17:29Z","updated_at":"2016-12-07T18:17:29Z","body":"I think this is probably best added onto #200 or #201."}}
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