{"push_id":937063797,"size":2,"distinct_size":1,"ref":"refs/heads/sv_master","head":"ba76c1390d9301b7fa3904cb4141ba7202d27f9e","before":"ba65e4086734505c0307e5c20ea10da85b6da1b1","commits":[{"sha":"aed4dcdbaffbd02a9e231a68317953bc1e236359","author":{"email":"8aba7399c55750dd9a4a44e2e04227b113bce2bc@broadinstitute.org","name":"tsharpe"},"message":"GatherSplitReadsSpark now\n 1) reads a kmer kill list (prepared by FindBadGenomicKmers),\n 2) finds reads that support a notion of a breakpoint (split or discordant),\n 3) kmerizes them for each breakpoint ignoring those kmers that are on the kill list, and then\n 4) passes over all the reads again, pulling out those reads containing the breakpoint-supporting kmers.\n 5) Finally, the reads to be assembled for each breakpoint are dumped into a FASTQ file.\nFindBadGenomicKmers cleanup.  More comments.  Fewer magic values.\nAdded unit tests for Kmer class.","distinct":false,"url":"https://api.github.com/repos/broadinstitute/gatk/commits/aed4dcdbaffbd02a9e231a68317953bc1e236359"},{"sha":"ba76c1390d9301b7fa3904cb4141ba7202d27f9e","author":{"email":"a569053dedce2b4b589b850f95e05895f28158ac@users.noreply.github.com","name":"tedsharpe"},"message":"Merge pull request #1434 from broadinstitute/cww_gather_split_reads\n\nGatherSplitReadsSpark","distinct":true,"url":"https://api.github.com/repos/broadinstitute/gatk/commits/ba76c1390d9301b7fa3904cb4141ba7202d27f9e"}]}