{"action":"created","issue":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/2226","repository_url":"https://api.github.com/repos/openmicroscopy/bioformats","labels_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/2226/labels{/name}","comments_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/2226/comments","events_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/2226/events","html_url":"https://github.com/openmicroscopy/bioformats/pull/2226","id":131078122,"number":2226,"title":"Micromanager: *_metadata.txt and 51123 tag parsing","user":{"login":"melissalinkert","id":109998,"avatar_url":"https://avatars.githubusercontent.com/u/109998?v=3","gravatar_id":"","url":"https://api.github.com/users/melissalinkert","html_url":"https://github.com/melissalinkert","followers_url":"https://api.github.com/users/melissalinkert/followers","following_url":"https://api.github.com/users/melissalinkert/following{/other_user}","gists_url":"https://api.github.com/users/melissalinkert/gists{/gist_id}","starred_url":"https://api.github.com/users/melissalinkert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/melissalinkert/subscriptions","organizations_url":"https://api.github.com/users/melissalinkert/orgs","repos_url":"https://api.github.com/users/melissalinkert/repos","events_url":"https://api.github.com/users/melissalinkert/events{/privacy}","received_events_url":"https://api.github.com/users/melissalinkert/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/openmicroscopy/bioformats/labels/develop","name":"develop","color":"02e10c"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-02-03T16:33:44Z","updated_at":"2016-02-05T15:34:16Z","closed_at":"2016-02-05T13:00:45Z","pull_request":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/pulls/2226","html_url":"https://github.com/openmicroscopy/bioformats/pull/2226","diff_url":"https://github.com/openmicroscopy/bioformats/pull/2226.diff","patch_url":"https://github.com/openmicroscopy/bioformats/pull/2226.patch"},"body":"This fixes several issues with the new datasets from Thomas Julou - see https://github.com/openmicroscopy/data_repo_config/pull/76 for configuration and gh-2213 for discussion.\r\n\r\nFor each of the four new datasets, check that ```showinf``` on the ```*metadata.txt``` file shows images without an error (with this change).  Without this change, ```showinf``` on ```test_sep/Pos0/metadata.txt``` should work, but all others will throw an exception.\r\n\r\nFor ```test2_sep```, ```test_stack```, and ```test2_stack```, check each image (this may be easier in ImageJ) and verify that each image is unique and not blank.\r\n\r\nFor ```test_stack``` and ```test2_stack```, the 51123 tag should be parsed for each plane.  Compare the original metadata tables with and without this change; there should be several new ```Plane #...``` keys with this change."},"comment":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/comments/180403685","html_url":"https://github.com/openmicroscopy/bioformats/pull/2226#issuecomment-180403685","issue_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/2226","id":180403685,"user":{"login":"melissalinkert","id":109998,"avatar_url":"https://avatars.githubusercontent.com/u/109998?v=3","gravatar_id":"","url":"https://api.github.com/users/melissalinkert","html_url":"https://github.com/melissalinkert","followers_url":"https://api.github.com/users/melissalinkert/followers","following_url":"https://api.github.com/users/melissalinkert/following{/other_user}","gists_url":"https://api.github.com/users/melissalinkert/gists{/gist_id}","starred_url":"https://api.github.com/users/melissalinkert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/melissalinkert/subscriptions","organizations_url":"https://api.github.com/users/melissalinkert/orgs","repos_url":"https://api.github.com/users/melissalinkert/repos","events_url":"https://api.github.com/users/melissalinkert/events{/privacy}","received_events_url":"https://api.github.com/users/melissalinkert/received_events","type":"User","site_admin":false},"created_at":"2016-02-05T15:34:16Z","updated_at":"2016-02-05T15:34:16Z","body":"--rebased-to #2232"}}