{"push_id":1018089327,"size":10,"distinct_size":10,"ref":"refs/heads/master","head":"a7fccc8bb03e92b822e407de363394de28543e7e","before":"1687c188a1286318c6e4ecae24d5c53d67390bff","commits":[{"sha":"72c07ab9f4662e54f4d4dae327c30b37b37be5fe","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"took out database conflicts option.\nhaving the database conflicts lines didn't help interpretation of the plots,\nand actually I thought it was misleading.\nI want to make database comparison optional and not part of the default workflow, so I took it out.\nyou could still add the path manually from within RStudio and un-hash the plotting calls that made this if you want.\nthis is sad because it took me SO LONG to add that in to the plots.  so long branch panda :(","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/72c07ab9f4662e54f4d4dae327c30b37b37be5fe"},{"sha":"e177ae7997c67c70db3dca5e346d56437c6c7f61","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"took out all database curation steps b/c they're going in a separate workflow now.\nchanged all the step numbers too b/c removed the entire step 11,\nand parts of former step 12/new step 11 where you format files.","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/e177ae7997c67c70db3dca5e346d56437c6c7f61"},{"sha":"0c326dcc79aedf407ff54c18cf5977e5e4a948f5","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"I am moving the arb repo to be part of this one b/c it is so related.\nMany of the scripts in the workflow are used for improving the arb database, just with different flags in the call.  It makes sense to have them togehter.\nDifferent folder so you can still just copy-paste all the workflow scripts into your working directory easily.","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/0c326dcc79aedf407ff54c18cf5977e5e4a948f5"},{"sha":"8878341d8296e3240c6413bdf6e9d97cf8902a75","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"I added these from the ARBscripts repo.  It was too complicated to do it with git tracking.\nit's not like there's much history to lose, the only person who could possibly care would be me and I don't.\nanyway, go back and delete that other repo, I'm using it here now!","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/8878341d8296e3240c6413bdf6e9d97cf8902a75"},{"sha":"8bcce47598671f0b8d6deb251c294e3083ec603a","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"adjusted to refelct new numbesr and not doing database checks in workflow anymore","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/8bcce47598671f0b8d6deb251c294e3083ec603a"},{"sha":"704d74455720445dcb512ab909ac1ef69557cbca","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"updated workflow. split step 4 into 2 steps, so now calc pidents and filter\npidents are in different steps.  Also fixed descriptions up to step6, so all the blast descriptions.\nI simplified it, so all the descriptions are \"what the arguments are\" and they don't list flags and file names separately.","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/704d74455720445dcb512ab909ac1ef69557cbca"},{"sha":"7b581568753d9f6f6eaba61e1694c4ab390d534d","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"edits to step descriptions to simplify them.\nno actual changes to what happens.","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/7b581568753d9f6f6eaba61e1694c4ab390d534d"},{"sha":"55daaecaf41cbc41f64c93472cd6e129ffafc9c0","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"updated step numbers in LazyRun.\nminor formatting in clean workflow.","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/55daaecaf41cbc41f64c93472cd6e129ffafc9c0"},{"sha":"213f60270bf075875435b0e90be194275cbb2cdd","author":{"email":"2e17a64030494507ec44710525fdd346cd395247@gmail.com","name":"Robin Rohwer"},"message":"edited step 0, still need to add input file formatting from mothur/qiime","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/213f60270bf075875435b0e90be194275cbb2cdd"},{"sha":"a7fccc8bb03e92b822e407de363394de28543e7e","author":{"email":"6b44467c88d5fd36e6b0c37f6948e368229c2096@users.noreply.github.com","name":"Joshua J Hamilton"},"message":"Merge pull request #88 from rrohwer/grylls\n\nEdits to Directions, Split out the database curation steps","distinct":true,"url":"https://api.github.com/repos/joshamilton/16STaxAss/commits/a7fccc8bb03e92b822e407de363394de28543e7e"}]}