{"action":"created","issue":{"url":"https://api.github.com/repos/hyginn/Ontoscope/issues/4","repository_url":"https://api.github.com/repos/hyginn/Ontoscope","labels_url":"https://api.github.com/repos/hyginn/Ontoscope/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/hyginn/Ontoscope/issues/4/comments","events_url":"https://api.github.com/repos/hyginn/Ontoscope/issues/4/events","html_url":"https://github.com/hyginn/Ontoscope/issues/4","id":141123533,"number":4,"title":"PHYLIFY","user":{"login":"thejmazz","id":1270998,"avatar_url":"https://avatars.githubusercontent.com/u/1270998?v=3","gravatar_id":"","url":"https://api.github.com/users/thejmazz","html_url":"https://github.com/thejmazz","followers_url":"https://api.github.com/users/thejmazz/followers","following_url":"https://api.github.com/users/thejmazz/following{/other_user}","gists_url":"https://api.github.com/users/thejmazz/gists{/gist_id}","starred_url":"https://api.github.com/users/thejmazz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thejmazz/subscriptions","organizations_url":"https://api.github.com/users/thejmazz/orgs","repos_url":"https://api.github.com/users/thejmazz/repos","events_url":"https://api.github.com/users/thejmazz/events{/privacy}","received_events_url":"https://api.github.com/users/thejmazz/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"thejmazz","id":1270998,"avatar_url":"https://avatars.githubusercontent.com/u/1270998?v=3","gravatar_id":"","url":"https://api.github.com/users/thejmazz","html_url":"https://github.com/thejmazz","followers_url":"https://api.github.com/users/thejmazz/followers","following_url":"https://api.github.com/users/thejmazz/following{/other_user}","gists_url":"https://api.github.com/users/thejmazz/gists{/gist_id}","starred_url":"https://api.github.com/users/thejmazz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thejmazz/subscriptions","organizations_url":"https://api.github.com/users/thejmazz/orgs","repos_url":"https://api.github.com/users/thejmazz/repos","events_url":"https://api.github.com/users/thejmazz/events{/privacy}","received_events_url":"https://api.github.com/users/thejmazz/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/hyginn/Ontoscope/milestones/1","html_url":"https://github.com/hyginn/Ontoscope/milestones/March%2022","labels_url":"https://api.github.com/repos/hyginn/Ontoscope/milestones/1/labels","id":1646764,"number":1,"title":"March 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[x] parse OBO\r\n- [x] construct DAG\r\n- [ ] filter out edges/nodes\r\n- [ ] Builds COdat"},"comment":{"url":"https://api.github.com/repos/hyginn/Ontoscope/issues/comments/200556773","html_url":"https://github.com/hyginn/Ontoscope/issues/4#issuecomment-200556773","issue_url":"https://api.github.com/repos/hyginn/Ontoscope/issues/4","id":200556773,"user":{"login":"hyginn","id":6756226,"avatar_url":"https://avatars.githubusercontent.com/u/6756226?v=3","gravatar_id":"","url":"https://api.github.com/users/hyginn","html_url":"https://github.com/hyginn","followers_url":"https://api.github.com/users/hyginn/followers","following_url":"https://api.github.com/users/hyginn/following{/other_user}","gists_url":"https://api.github.com/users/hyginn/gists{/gist_id}","starred_url":"https://api.github.com/users/hyginn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hyginn/subscriptions","organizations_url":"https://api.github.com/users/hyginn/orgs","repos_url":"https://api.github.com/users/hyginn/repos","events_url":"https://api.github.com/users/hyginn/events{/privacy}","received_events_url":"https://api.github.com/users/hyginn/received_events","type":"User","site_admin":false},"created_at":"2016-03-23T21:50:17Z","updated_at":"2016-03-23T21:50:17Z","body":"Could you post these on your Student Wiki page?\nThanks!\n\nBoris\n\n\n\nOn Mar 23, 2016, at 5:48 PM, burtonlm <notifications@github.com> wrote:\n\n> Hey, here are some guidelines (heuristics) that I would follow to clean up the OBO file before converting to a cell lineage graph. Not sure if this helps you... Let me know if you were wanting something else.\n> -Keep terms that have 'CL' in their ID\n> -If you don't want to include cell samples, remove any terms with 'FF' in the ID. But maybe you want to include cell samples so that GATHER can use the tree to obtain expression profiles for cells and their backgrounds? I'm not sure about this...\n> -Remove anatomical parts (terms which contain 'UBERON' in the ID)\n> -Remove NCBI Taxons, which have 'NCBITaxon' in the ID\n> -Remove 'mouse' terms (if any part of the term (ID, is_a, etc.) contains 'mouse')\n> -Remove diseases ('DOID' in the ID)\n> -Remove molecules ('CHEBI' in the ID)\n> \n> �\n> You are receiving this because you are subscribed to this thread.\n> Reply to this email directly or view it on GitHub\n> \n\n"}}