{"action":"created","issue":{"url":"https://api.github.com/repos/satijalab/seurat/issues/17","repository_url":"https://api.github.com/repos/satijalab/seurat","labels_url":"https://api.github.com/repos/satijalab/seurat/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/satijalab/seurat/issues/17/comments","events_url":"https://api.github.com/repos/satijalab/seurat/issues/17/events","html_url":"https://github.com/satijalab/seurat/issues/17","id":177778360,"number":17,"title":"Problem running PCA","user":{"login":"cartal","id":3297906,"avatar_url":"https://avatars.githubusercontent.com/u/3297906?v=3","gravatar_id":"","url":"https://api.github.com/users/cartal","html_url":"https://github.com/cartal","followers_url":"https://api.github.com/users/cartal/followers","following_url":"https://api.github.com/users/cartal/following{/other_user}","gists_url":"https://api.github.com/users/cartal/gists{/gist_id}","starred_url":"https://api.github.com/users/cartal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cartal/subscriptions","organizations_url":"https://api.github.com/users/cartal/orgs","repos_url":"https://api.github.com/users/cartal/repos","events_url":"https://api.github.com/users/cartal/events{/privacy}","received_events_url":"https://api.github.com/users/cartal/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-09-19T13:01:33Z","updated_at":"2016-09-19T21:46:38Z","closed_at":null,"body":"Hi\r\n\r\nI just installed the new version of Seurat via Bioconductor and I'm having some issues running the PCA function.\r\n\r\nMy command is:\r\n\r\ndeconv <- PCA(deconv, pc.genes = deconv@var.genes, do.print = TRUE, pcs.print = 5, genes.print = 5)\r\n\r\nBut after that I have an error:\r\n\r\nError in pca.obj$rotation[, 1:pcs.store] : subscript out of bounds\r\n\r\nI have tried to find what the problem may be, but I can't identify the source of the error.\r\n\r\nPrevious steps didn't show errors, until this one. I don't think there is an issue with the format of the original data since it worked at first (although it may very well be the case). \r\n\r\nLooking forward to hearing from you\r\n\r\nRegards "},"comment":{"url":"https://api.github.com/repos/satijalab/seurat/issues/comments/248137304","html_url":"https://github.com/satijalab/seurat/issues/17#issuecomment-248137304","issue_url":"https://api.github.com/repos/satijalab/seurat/issues/17","id":248137304,"user":{"login":"cartal","id":3297906,"avatar_url":"https://avatars.githubusercontent.com/u/3297906?v=3","gravatar_id":"","url":"https://api.github.com/users/cartal","html_url":"https://github.com/cartal","followers_url":"https://api.github.com/users/cartal/followers","following_url":"https://api.github.com/users/cartal/following{/other_user}","gists_url":"https://api.github.com/users/cartal/gists{/gist_id}","starred_url":"https://api.github.com/users/cartal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cartal/subscriptions","organizations_url":"https://api.github.com/users/cartal/orgs","repos_url":"https://api.github.com/users/cartal/repos","events_url":"https://api.github.com/users/cartal/events{/privacy}","received_events_url":"https://api.github.com/users/cartal/received_events","type":"User","site_admin":false},"created_at":"2016-09-19T21:46:38Z","updated_at":"2016-09-19T21:46:38Z","body":"Thanks! It works now. "}}
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