{"push_id":1154456830,"size":3,"distinct_size":3,"ref":"refs/heads/master","head":"4e420c2948dd80847256d3f821f24e2f37525405","before":"6a650dd0a86c265bd7a3d642d40d253e934fc575","commits":[{"sha":"13a6d0741f082675d212392fb7e1692c196306ad","author":{"name":"borisz264","email":"c0f3aeef2200e35268e871e298a5a197441d537d@gmail.com"},"message":"Switched to storing summary of read lengths, instead of storing the actual list of read lengths.\nThis results in  a MASSIVE speedup due to reduction in pickle filesize of ~500x.","distinct":true,"url":"https://api.github.com/repos/borisz264/mono_seq/commits/13a6d0741f082675d212392fb7e1692c196306ad"},{"sha":"548f78c2332fb6b82d8187c232a8fa807120ff6e","author":{"name":"borisz264","email":"c0f3aeef2200e35268e871e298a5a197441d537d@gmail.com"},"message":"Now keeping sorted lists of initialized libraries by type (monosome, mRNP, total, etc)\nrealized that these lists were not even being read from the settings file yet, so i added that.\n\nadded function to return library object given the sample name\n\nadded functionality to return table of raw read counts or reads per million (RPM)\n\nadded method to ms_lib to return RPMs, as well as the list of counts or RPMs for all pool sequences\n\nadded functions to plot all library RPMs agains each other, as well as to plot 80S/mRNP, 80S/total, 80S/(mRNP+total) metrics of replicates against each other\n\nadded utility function to filter paired lists of reads for illegal values (Nan, +-inf)","distinct":true,"url":"https://api.github.com/repos/borisz264/mono_seq/commits/548f78c2332fb6b82d8187c232a8fa807120ff6e"},{"sha":"4e420c2948dd80847256d3f821f24e2f37525405","author":{"name":"borisz264","email":"c0f3aeef2200e35268e871e298a5a197441d537d@gmail.com"},"message":"added method to write table of monosome recruitment scores, with default read cutoff of 128nt between the 2 compared libraries\n\nadded QC plot to aid in choice of read cutoff to use based on binomial sampling expectations as in Ingolia et al, Science, 2009. I'm not sure it works well for these experiments due to low numbers of sequences in the pool.","distinct":true,"url":"https://api.github.com/repos/borisz264/mono_seq/commits/4e420c2948dd80847256d3f821f24e2f37525405"}]}
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