{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/schemas/issues/518","repository_url":"https://api.github.com/repos/ga4gh/schemas","labels_url":"https://api.github.com/repos/ga4gh/schemas/issues/518/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/schemas/issues/518/comments","events_url":"https://api.github.com/repos/ga4gh/schemas/issues/518/events","html_url":"https://github.com/ga4gh/schemas/issues/518","id":122615856,"number":518,"title":"reference and refererencesets should allow for multiple names.","user":{"login":"diekhans","id":110053,"avatar_url":"https://avatars.githubusercontent.com/u/110053?v=3","gravatar_id":"","url":"https://api.github.com/users/diekhans","html_url":"https://github.com/diekhans","followers_url":"https://api.github.com/users/diekhans/followers","following_url":"https://api.github.com/users/diekhans/following{/other_user}","gists_url":"https://api.github.com/users/diekhans/gists{/gist_id}","starred_url":"https://api.github.com/users/diekhans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/diekhans/subscriptions","organizations_url":"https://api.github.com/users/diekhans/orgs","repos_url":"https://api.github.com/users/diekhans/repos","events_url":"https://api.github.com/users/diekhans/events{/privacy}","received_events_url":"https://api.github.com/users/diekhans/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/ga4gh/schemas/labels/Documentation","name":"Documentation","color":"006b75"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":17,"created_at":"2015-12-16T22:16:30Z","updated_at":"2016-04-28T18:27:13Z","closed_at":null,"body":"Sequence data often has multiple equivalent names.  It would be very useful for GA4GH to represent and query on multiple different names.\r\n\r\nfor instance GRCh38.p2 is also GCF_000001405.28\r\nChromosome 1 has the names 1, CM000663.2, NC_000001.11, and chr1\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/ga4gh/schemas/issues/comments/215519392","html_url":"https://github.com/ga4gh/schemas/issues/518#issuecomment-215519392","issue_url":"https://api.github.com/repos/ga4gh/schemas/issues/518","id":215519392,"user":{"login":"diekhans","id":110053,"avatar_url":"https://avatars.githubusercontent.com/u/110053?v=3","gravatar_id":"","url":"https://api.github.com/users/diekhans","html_url":"https://github.com/diekhans","followers_url":"https://api.github.com/users/diekhans/followers","following_url":"https://api.github.com/users/diekhans/following{/other_user}","gists_url":"https://api.github.com/users/diekhans/gists{/gist_id}","starred_url":"https://api.github.com/users/diekhans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/diekhans/subscriptions","organizations_url":"https://api.github.com/users/diekhans/orgs","repos_url":"https://api.github.com/users/diekhans/repos","events_url":"https://api.github.com/users/diekhans/events{/privacy}","received_events_url":"https://api.github.com/users/diekhans/received_events","type":"User","site_admin":false},"created_at":"2016-04-28T18:27:13Z","updated_at":"2016-04-28T18:27:13Z","body":"there is no need for heuristic name mapping, which can be unpredictable.  The names are precisely defined as part of the assembly release:\r\n   ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.28.assembly.txt\r\n\r\nthe accession is not contained in the string:\r\n   >3 dna:chromosome chromosome:GRCh37:3:1:198022430:1\r\n  "}}