{"push_id":1263579074,"size":20,"distinct_size":2,"ref":"refs/heads/tp_partitioning_2","head":"94908c9d01e00d25860e6932608daa1a5bea5461","before":"6bf003e7cd2dcde40baea903522460a944f43e30","commits":[{"sha":"fe236c451d55e14ebba7646626eeb473911822ce","author":{"name":"Cotton Seed","email":"c7c55042da89d13b46b9fcda20dbbbdb07a79e85@broadinstitute.org"},"message":"Minor doc cleanups.\n\nRenamed pandocSampleTemplate.css style.css.\nSet title/h1 to Hail Documentation in index.html.\nMade Building Hail first item in TOC.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/fe236c451d55e14ebba7646626eeb473911822ce"},{"sha":"c19d34dc19e50eff14114adfd25e35a0456104e9","author":{"name":"Cotton Seed","email":"c7c55042da89d13b46b9fcda20dbbbdb07a79e85@broadinstitute.org"},"message":"Don't load MathJax until all content is loaded.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/c19d34dc19e50eff14114adfd25e35a0456104e9"},{"sha":"d63b23850156c95b811d60722f51b86d2d189021","author":{"name":"Daniel King","email":"18ab9a8636d4345b9adc69d26b38edb40df5f89c@broadinstitute.org"},"message":"delete trailing whitespace","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/d63b23850156c95b811d60722f51b86d2d189021"},{"sha":"f84d1bd55bf7feb454847dc08b8594473dd21c22","author":{"name":"Daniel King","email":"18ab9a8636d4345b9adc69d26b38edb40df5f89c@broadinstitute.org"},"message":"remove leading whitespace from code blocks","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/f84d1bd55bf7feb454847dc08b8594473dd21c22"},{"sha":"0c8e7451ce55506b74d918a48c6fa72c1cb71c6f","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #646 from danking/remove-leading-whitespace\n\nRemove leading whitespace","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/0c8e7451ce55506b74d918a48c6fa72c1cb71c6f"},{"sha":"70b7fdedc47623f0e876caa0f53e282789f2a449","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #637 from cseed/master\n\nMinor doc cleanups.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/70b7fdedc47623f0e876caa0f53e282789f2a449"},{"sha":"30eb6abed0e89b6162a597e4b5d16091014f0034","author":{"name":"Cotton Seed","email":"c7c55042da89d13b46b9fcda20dbbbdb07a79e85@broadinstitute.org"},"message":"Turn logging back off in SparkSuite.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/30eb6abed0e89b6162a597e4b5d16091014f0034"},{"sha":"9fd8ecbcbcf0c92cf4bb18924f8e8f25e8794b61","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #650 from cseed/master\n\nTurn logging back off in SparkSuite.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/9fd8ecbcbcf0c92cf4bb18924f8e8f25e8794b61"},{"sha":"f594af25b6856fa0ba83132080189ad4c3f2514e","author":{"name":"Cotton Seed","email":"c7c55042da89d13b46b9fcda20dbbbdb07a79e85@broadinstitute.org"},"message":"Simplified, increased contrast of link styling.\n\nFixed broken link.\nStyle code in links as code.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/f594af25b6856fa0ba83132080189ad4c3f2514e"},{"sha":"e3e2b032cf5e67e132992ee09d10ef34bc692ceb","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #651 from cseed/master\n\nSimplified, increased contrast of link styling.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/e3e2b032cf5e67e132992ee09d10ef34bc692ceb"},{"sha":"7e4e1398273ee505d20008902b865b0c84baeef9","author":{"name":"Cotton Seed","email":"c7c55042da89d13b46b9fcda20dbbbdb07a79e85@broadinstitute.org"},"message":"More css tweaks.\n\nStyle pre > code as block, line height 1.1.\nTreat pre.synopsys similarly.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/7e4e1398273ee505d20008902b865b0c84baeef9"},{"sha":"c93c4bec8c1d309e34bcb9afcf692192e3d6aa80","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #652 from cseed/master\n\nMore css tweaks.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/c93c4bec8c1d309e34bcb9afcf692192e3d6aa80"},{"sha":"c6323f2f9b1d1edc75bc096b463d94543e980378","author":{"name":"Alex Zamoshchin","email":"23c3da6710034c5bd29c9090bfc2661091be2921@gmail.com"},"message":"fixes #563: Don't emit trailing missing fields in FORMAT field","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/c6323f2f9b1d1edc75bc096b463d94543e980378"},{"sha":"8287ebf7552f081e9ba2385950b9efe21c4f014f","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #617 from zamoshchin/exportvcf_no_trailing\n\nfixes #563: Don't emit trailing missing fields in FORMAT field","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/8287ebf7552f081e9ba2385950b9efe21c4f014f"},{"sha":"276f16439258681cd805b507291a33925570f30d","author":{"name":"jbloom22","email":"d35a4f6add1e1a842639fc60190dd3c75969f7cc@broadinstitute.org"},"message":"removed nMissing from linreg annotations, updated docs\n- removed nMissing from linreg annotations\n- removed nMissing from linreg tests\n- spelled out LinearRegression instead of LinReg in several variables\n- added metaVars to LinearRegressionCommand\n- updated linreg.md, including latex\n- added pandoc requirement to DocsStyleGuide.md","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/276f16439258681cd805b507291a33925570f30d"},{"sha":"e3a6761acfd3f196e7e4981d7cac065333cfc629","author":{"name":"Cotton Seed","email":"c7c55042da89d13b46b9fcda20dbbbdb07a79e85@broadinstitute.org"},"message":"Don't override spark.master with local.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/e3a6761acfd3f196e7e4981d7cac065333cfc629"},{"sha":"82bac90135ec2374e1fce69efc00de05ee1398e5","author":{"name":"cseed","email":"72892f65b9242cbd0aa5dcaeec3467fa0fac4109@alum.mit.edu"},"message":"Merge pull request #645 from jbloom22/jb_linreg_annot_and_doc_update\n\nremoved nMissing from linreg annotations, updated doc","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/82bac90135ec2374e1fce69efc00de05ee1398e5"},{"sha":"db48dac6ed6b95bc148a5a87e426b5fa56fc0abb","author":{"name":"Tim Poterba","email":"6e553fd1a4f3799c1e1c306d2ec64bdce2535d24@broadinstitute.org"},"message":"Merge pull request #659 from cseed/master\n\nDon't override spark.master with local.","distinct":false,"url":"https://api.github.com/repos/tpoterba/hail/commits/db48dac6ed6b95bc148a5a87e426b5fa56fc0abb"},{"sha":"d9ab718f2591f389e563df504f3e320f70df05a9","author":{"name":"tpoterba","email":"6e553fd1a4f3799c1e1c306d2ec64bdce2535d24@broadinstitute.org"},"message":"Preserve partitioning after write/read.\n\nImplement and override certain Spark DataFrame functions\nneeded to load parquet files.  We are able to load in the\nsame partitioning by looking at file name -- Spark writes\nparquet files as /.../.../.../part-[XXXXX}-r-<hash>.  This\ncommit looks at that part number and reloads a HadoopRDD\nwhere partitioning matches this file metadata.","distinct":true,"url":"https://api.github.com/repos/tpoterba/hail/commits/d9ab718f2591f389e563df504f3e320f70df05a9"},{"sha":"94908c9d01e00d25860e6932608daa1a5bea5461","author":{"name":"tpoterba","email":"6e553fd1a4f3799c1e1c306d2ec64bdce2535d24@broadinstitute.org"},"message":"ordered RDDs\n\nAdded OrderedRDD, OrderedLeftJoinRDD, OrderedLeftJoinTransformedRDD.\n\n- all join / variant annotation steps are hugely faster\n- Created new OrderedPartitioner parameterized by T, K\n- eliminated many shuffles throughout codebase that are now unnecessary\n- causes ImportVCF, ImportBGEN, ImportPLINK, and back-compatible read\n  to be moderately expensive action operations now","distinct":true,"url":"https://api.github.com/repos/tpoterba/hail/commits/94908c9d01e00d25860e6932608daa1a5bea5461"}]}
{"actor":{"display_login":"tpoterba"}}