{"action":"created","issue":{"url":"https://api.github.com/repos/msmbuilder/msmbuilder/issues/931","repository_url":"https://api.github.com/repos/msmbuilder/msmbuilder","labels_url":"https://api.github.com/repos/msmbuilder/msmbuilder/issues/931/labels{/name}","comments_url":"https://api.github.com/repos/msmbuilder/msmbuilder/issues/931/comments","events_url":"https://api.github.com/repos/msmbuilder/msmbuilder/issues/931/events","html_url":"https://github.com/msmbuilder/msmbuilder/pull/931","id":184984545,"number":931,"title":"Added error bars to MFPT","user":{"login":"jadeshi","id":3607034,"avatar_url":"https://avatars.githubusercontent.com/u/3607034?v=3","gravatar_id":"","url":"https://api.github.com/users/jadeshi","html_url":"https://github.com/jadeshi","followers_url":"https://api.github.com/users/jadeshi/followers","following_url":"https://api.github.com/users/jadeshi/following{/other_user}","gists_url":"https://api.github.com/users/jadeshi/gists{/gist_id}","starred_url":"https://api.github.com/users/jadeshi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jadeshi/subscriptions","organizations_url":"https://api.github.com/users/jadeshi/orgs","repos_url":"https://api.github.com/users/jadeshi/repos","events_url":"https://api.github.com/users/jadeshi/events{/privacy}","received_events_url":"https://api.github.com/users/jadeshi/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-10-24T23:53:07Z","updated_at":"2016-10-26T00:00:51Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/msmbuilder/msmbuilder/pulls/931","html_url":"https://github.com/msmbuilder/msmbuilder/pull/931","diff_url":"https://github.com/msmbuilder/msmbuilder/pull/931.diff","patch_url":"https://github.com/msmbuilder/msmbuilder/pull/931.patch"},"body":" - [x] Implement feature / fix bug\r\n - [ ] Add tests\r\n - [ ] Update changelog\r\n\r\nAdded a function, generate_mfpt_dist, that allows you to generate a distribution of MFPTs accounting for errors in the transition matrix. It works by generating a Gaussian random variable for each nonzero transition probability, with standard deviation equal to the standard error (tprob - tprob ^ 2) / (total row counts) ^ 0.5. You then sample from each random variable once to get a perturbed transition matrix, compute the MFPTs for the perturbed matrix, and repeat for however many samples you want. Returns a (n_samples x n_states) 2d numpy array of MFPTs for a given set of sinks."},"comment":{"url":"https://api.github.com/repos/msmbuilder/msmbuilder/issues/comments/256213510","html_url":"https://github.com/msmbuilder/msmbuilder/pull/931#issuecomment-256213510","issue_url":"https://api.github.com/repos/msmbuilder/msmbuilder/issues/931","id":256213510,"user":{"login":"cxhernandez","id":5142365,"avatar_url":"https://avatars.githubusercontent.com/u/5142365?v=3","gravatar_id":"","url":"https://api.github.com/users/cxhernandez","html_url":"https://github.com/cxhernandez","followers_url":"https://api.github.com/users/cxhernandez/followers","following_url":"https://api.github.com/users/cxhernandez/following{/other_user}","gists_url":"https://api.github.com/users/cxhernandez/gists{/gist_id}","starred_url":"https://api.github.com/users/cxhernandez/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cxhernandez/subscriptions","organizations_url":"https://api.github.com/users/cxhernandez/orgs","repos_url":"https://api.github.com/users/cxhernandez/repos","events_url":"https://api.github.com/users/cxhernandez/events{/privacy}","received_events_url":"https://api.github.com/users/cxhernandez/received_events","type":"User","site_admin":false},"created_at":"2016-10-26T00:00:51Z","updated_at":"2016-10-26T00:00:51Z","body":"Maybe just call the kwarg `error`?"}}
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