{"action":"opened","issue":{"url":"https://api.github.com/repos/benedictpaten/sonLib/issues/28","labels_url":"https://api.github.com/repos/benedictpaten/sonLib/issues/28/labels{/name}","comments_url":"https://api.github.com/repos/benedictpaten/sonLib/issues/28/comments","events_url":"https://api.github.com/repos/benedictpaten/sonLib/issues/28/events","html_url":"https://github.com/benedictpaten/sonLib/issues/28","id":127827085,"number":28,"title":"make test error","user":{"login":"tallnuttcsiro","id":13056930,"avatar_url":"https://avatars.githubusercontent.com/u/13056930?v=3","gravatar_id":"","url":"https://api.github.com/users/tallnuttcsiro","html_url":"https://github.com/tallnuttcsiro","followers_url":"https://api.github.com/users/tallnuttcsiro/followers","following_url":"https://api.github.com/users/tallnuttcsiro/following{/other_user}","gists_url":"https://api.github.com/users/tallnuttcsiro/gists{/gist_id}","starred_url":"https://api.github.com/users/tallnuttcsiro/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tallnuttcsiro/subscriptions","organizations_url":"https://api.github.com/users/tallnuttcsiro/orgs","repos_url":"https://api.github.com/users/tallnuttcsiro/repos","events_url":"https://api.github.com/users/tallnuttcsiro/events{/privacy}","received_events_url":"https://api.github.com/users/tallnuttcsiro/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-01-21T01:50:30Z","updated_at":"2016-01-21T01:50:30Z","closed_at":null,"body":"Get this error with make test. Also python can't find the modules.\r\n.../bin/sh: 1: sonLib_kvDatabaseTest: not found\r\nE/bin/sh: 1: sonLibTests: not found\r\nE\r\n======================================================================\r\nERROR: testFastaReadWriteC (bioioTest.TestCase)\r\nTests consistency with C version of this function.\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/bioioTest.py\", line 185, in testFastaReadWriteC\r\n    system(command)\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/bioio.py\", line 185, in system\r\n    raise RuntimeError(\"Command: %s exited with non-zero status %i\" % (command, sts))\r\nRuntimeError: Command: sonLib_fastaCTest /tmp/tmp8537yf /tmp/tmpG6V7Df exited with non-zero status 127\r\n\r\n======================================================================\r\nERROR: testCigarReadWrite (cigarsTest.TestCase)\r\nTests the C code for reading and writing cigars against the python parser for cigars.\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/cigarsTest.py\", line 57, in testCigarReadWrite\r\n    system(command)\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/bioio.py\", line 185, in system\r\n    raise RuntimeError(\"Command: %s exited with non-zero status %i\" % (command, sts))\r\nRuntimeError: Command: sonLib_cigarTest /tmp/tmpBZs1ok True exited with non-zero status 127\r\n\r\n======================================================================\r\nERROR: testSonLibKVTokyoCabinet (kvdbTest.TestCase)\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/kvdbTest.py\", line 18, in testSonLibKVTokyoCabinet\r\n    system(\"sonLib_kvDatabaseTest --type=tokyocabinet\")\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/bioio.py\", line 185, in system\r\n    raise RuntimeError(\"Command: %s exited with non-zero status %i\" % (command, sts))\r\nRuntimeError: Command: sonLib_kvDatabaseTest --type=tokyocabinet exited with non-zero status 127\r\n\r\n======================================================================\r\nERROR: testSonLibCTests (__main__.TestCase)\r\nRun m,ost the sonLib CuTests, fail if any of them fail.\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"allTests.py\", line 30, in testSonLibCTests\r\n    system(\"sonLibTests %s\" % getLogLevelString())\r\n  File \"/OSM/HOME-MEL/all29c/bin/sonLib/bioio.py\", line 185, in system\r\n    raise RuntimeError(\"Command: %s exited with non-zero status %i\" % (command, sts))\r\nRuntimeError: Command: sonLibTests CRITICAL exited with non-zero status 127\r\n\r\n----------------------------------------------------------------------\r\nRan 19 tests in 20.710s\r\n\r\nFAILED (errors=4)\r\nmake: *** [test] Error 4\r\n\r\n"}}