{"action":"created","issue":{"url":"https://api.github.com/repos/SofieVG/FlowSOM/issues/1","repository_url":"https://api.github.com/repos/SofieVG/FlowSOM","labels_url":"https://api.github.com/repos/SofieVG/FlowSOM/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/SofieVG/FlowSOM/issues/1/comments","events_url":"https://api.github.com/repos/SofieVG/FlowSOM/issues/1/events","html_url":"https://github.com/SofieVG/FlowSOM/issues/1","id":155962893,"number":1,"title":"importing the gating workspace from flowJo as .xml file in order to work in flowSOM ","user":{"login":"anaraserikbek","id":19268148,"avatar_url":"https://avatars.githubusercontent.com/u/19268148?v=3","gravatar_id":"","url":"https://api.github.com/users/anaraserikbek","html_url":"https://github.com/anaraserikbek","followers_url":"https://api.github.com/users/anaraserikbek/followers","following_url":"https://api.github.com/users/anaraserikbek/following{/other_user}","gists_url":"https://api.github.com/users/anaraserikbek/gists{/gist_id}","starred_url":"https://api.github.com/users/anaraserikbek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/anaraserikbek/subscriptions","organizations_url":"https://api.github.com/users/anaraserikbek/orgs","repos_url":"https://api.github.com/users/anaraserikbek/repos","events_url":"https://api.github.com/users/anaraserikbek/events{/privacy}","received_events_url":"https://api.github.com/users/anaraserikbek/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2016-05-20T13:26:56Z","updated_at":"2016-06-12T05:16:45Z","closed_at":null,"body":"Hi, \r\nI've been exploring FlowSOM and had a problem when exporting .xml. I've tried several ways:\r\n- get the XML code from flowJo & saving it through a text document as .xml file \r\n- importing it as .wsp file and opening it through R \r\nHowever, each time I get the following error: \r\n**Error in parseGatingML(xmlRoot(smartTreeParse(file, ...)), flowEnv) : \r\n  Not a supported Gating-ML XML format**\r\nI would appreciate any help. \r\nThank you "},"comment":{"url":"https://api.github.com/repos/SofieVG/FlowSOM/issues/comments/225410742","html_url":"https://github.com/SofieVG/FlowSOM/issues/1#issuecomment-225410742","issue_url":"https://api.github.com/repos/SofieVG/FlowSOM/issues/1","id":225410742,"user":{"login":"SofieVG","id":1912811,"avatar_url":"https://avatars.githubusercontent.com/u/1912811?v=3","gravatar_id":"","url":"https://api.github.com/users/SofieVG","html_url":"https://github.com/SofieVG","followers_url":"https://api.github.com/users/SofieVG/followers","following_url":"https://api.github.com/users/SofieVG/following{/other_user}","gists_url":"https://api.github.com/users/SofieVG/gists{/gist_id}","starred_url":"https://api.github.com/users/SofieVG/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SofieVG/subscriptions","organizations_url":"https://api.github.com/users/SofieVG/orgs","repos_url":"https://api.github.com/users/SofieVG/repos","events_url":"https://api.github.com/users/SofieVG/events{/privacy}","received_events_url":"https://api.github.com/users/SofieVG/received_events","type":"User","site_admin":false},"created_at":"2016-06-12T05:16:45Z","updated_at":"2016-06-12T05:16:45Z","body":"You probably want to define the gatingfile as\r\ngatingFile = \"FlowSOMgate.xml_AV 10-1974 P1_gates.xml\"\r\nif it is saved in your current working directory, or otherwise with the path to the file added.\r\nThe code from the documentation is specifically to load a file which is attached to the package.\r\nI'm not sure this is causing the problem though.\r\n\r\nPlease don't forget to remove the \"removethis.\" from the email address I provided if you try to contact me, I guess this is the reason your previous emails would not send."}}
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