{"action":"closed","issue":{"url":"https://api.github.com/repos/marbl/canu/issues/118","repository_url":"https://api.github.com/repos/marbl/canu","labels_url":"https://api.github.com/repos/marbl/canu/issues/118/labels{/name}","comments_url":"https://api.github.com/repos/marbl/canu/issues/118/comments","events_url":"https://api.github.com/repos/marbl/canu/issues/118/events","html_url":"https://github.com/marbl/canu/issues/118","id":150945388,"number":118,"title":"unitigging 3-overlapErrorAdjustment very slow and sluggish","user":{"login":"ghannum","id":9534138,"avatar_url":"https://avatars.githubusercontent.com/u/9534138?v=3","gravatar_id":"","url":"https://api.github.com/users/ghannum","html_url":"https://github.com/ghannum","followers_url":"https://api.github.com/users/ghannum/followers","following_url":"https://api.github.com/users/ghannum/following{/other_user}","gists_url":"https://api.github.com/users/ghannum/gists{/gist_id}","starred_url":"https://api.github.com/users/ghannum/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ghannum/subscriptions","organizations_url":"https://api.github.com/users/ghannum/orgs","repos_url":"https://api.github.com/users/ghannum/repos","events_url":"https://api.github.com/users/ghannum/events{/privacy}","received_events_url":"https://api.github.com/users/ghannum/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/marbl/canu/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":{"login":"brianwalenz","id":8249720,"avatar_url":"https://avatars.githubusercontent.com/u/8249720?v=3","gravatar_id":"","url":"https://api.github.com/users/brianwalenz","html_url":"https://github.com/brianwalenz","followers_url":"https://api.github.com/users/brianwalenz/followers","following_url":"https://api.github.com/users/brianwalenz/following{/other_user}","gists_url":"https://api.github.com/users/brianwalenz/gists{/gist_id}","starred_url":"https://api.github.com/users/brianwalenz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brianwalenz/subscriptions","organizations_url":"https://api.github.com/users/brianwalenz/orgs","repos_url":"https://api.github.com/users/brianwalenz/repos","events_url":"https://api.github.com/users/brianwalenz/events{/privacy}","received_events_url":"https://api.github.com/users/brianwalenz/received_events","type":"User","site_admin":false},"milestone":null,"comments":6,"created_at":"2016-04-25T18:29:39Z","updated_at":"2016-05-21T01:23:41Z","closed_at":"2016-05-21T01:23:41Z","body":"The findErrors processes appear to be exceptionally slow and make the machine very slow to respond.\r\n\r\nIn Canu1.0 w. 2.1mil reads (13.1GB) the step took 15hrs.\r\nUsing Canu1.2 w. 2.5mil reads (18.6 GB) the ETA is ~2wks.\r\n\r\nRun on single server w. 120 cores and 2TB ram. \r\nCPU usage is 75%, ram usage is <5%. All data stored on local SSD array.\r\n\r\n\r\n"}}
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