{"action":"closed","issue":{"url":"https://api.github.com/repos/WormBase/website/issues/5143","repository_url":"https://api.github.com/repos/WormBase/website","labels_url":"https://api.github.com/repos/WormBase/website/issues/5143/labels{/name}","comments_url":"https://api.github.com/repos/WormBase/website/issues/5143/comments","events_url":"https://api.github.com/repos/WormBase/website/issues/5143/events","html_url":"https://github.com/WormBase/website/issues/5143","id":180275698,"number":5143,"title":"Finding Helitron regions","user":{"login":"gw3","id":893224,"avatar_url":"https://avatars.githubusercontent.com/u/893224?v=3","gravatar_id":"","url":"https://api.github.com/users/gw3","html_url":"https://github.com/gw3","followers_url":"https://api.github.com/users/gw3/followers","following_url":"https://api.github.com/users/gw3/following{/other_user}","gists_url":"https://api.github.com/users/gw3/gists{/gist_id}","starred_url":"https://api.github.com/users/gw3/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gw3/subscriptions","organizations_url":"https://api.github.com/users/gw3/orgs","repos_url":"https://api.github.com/users/gw3/repos","events_url":"https://api.github.com/users/gw3/events{/privacy}","received_events_url":"https://api.github.com/users/gw3/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-09-30T10:52:50Z","updated_at":"2016-09-30T10:53:01Z","closed_at":"2016-09-30T10:53:01Z","body":"A user asked for a list of the well-formed HELITRON repeat regions in C. elegans.\r\n\r\nThese and other repeat motifs have recently been marked up as Transposon class objects with an ID name starting 'Predicted_' followed by the repeat subtype and then a unique number.\r\n\r\nThe HELITRON repeat subtypes in WormBase currently have the names: \r\nHELICOP1\r\nHELICOP2\r\nHELICOPY1\r\nHELICOPY2\r\nHELICOPY3\r\nNDNAX1_CE\r\nNDNAX2_CE\r\nNDNAX3_CE\r\n\r\nThis data was extracted by doing a search in the GFF file for Transposons with the name 'Predicted_HELICOP*' and for 'Predicted_NDNAX*'.\r\n\r\nThe GFF lines were converted to a CSV file containing the size of the region, the chromosomal location, the sense and the sub-type of Helitron repeat, for the convenience of the user."}}
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