{"action":"created","comment":{"url":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments/68794111","id":68794111,"diff_hunk":"@@ -9,7 +9,7 @@\n ### Backward-incompatible changes [experimental]\n \n ### Bug fixes\n-\n+* Improving useability for `ilr` and `ilr_inv` for 2D compositions.  ([#1393](https://github.com/biocore/scikit-bio/issues/1393))","path":"CHANGELOG.md","position":5,"original_position":5,"commit_id":"e1e1d294e5ee7bd500ab4ea3f2bb63d6828984a2","original_commit_id":"e1e1d294e5ee7bd500ab4ea3f2bb63d6828984a2","user":{"login":"jairideout","id":1847232,"avatar_url":"https://avatars.githubusercontent.com/u/1847232?v=3","gravatar_id":"","url":"https://api.github.com/users/jairideout","html_url":"https://github.com/jairideout","followers_url":"https://api.github.com/users/jairideout/followers","following_url":"https://api.github.com/users/jairideout/following{/other_user}","gists_url":"https://api.github.com/users/jairideout/gists{/gist_id}","starred_url":"https://api.github.com/users/jairideout/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jairideout/subscriptions","organizations_url":"https://api.github.com/users/jairideout/orgs","repos_url":"https://api.github.com/users/jairideout/repos","events_url":"https://api.github.com/users/jairideout/events{/privacy}","received_events_url":"https://api.github.com/users/jairideout/received_events","type":"User","site_admin":false},"body":"Can you expand the description of the bug? From this description, I can't tell what input(s) caused the bug and what the buggy behavior was (was it a silent bug producing incorrect results, or did it error noisily?). It appears the `basis` parameter didn't work with 1-D arrays for `ilr` and `ilr_inv`, but I'm unsure about the `clr_inv` transformation to `basis` that you added to `ilr_inv`. If there's more than one issue with `basis`, please describe that here.\r\n\r\nThe markdown heading below this section doesn't render correctly, please add a blank line after this bullet point.\r\n\r\nPlease also indicate the full public import path for these functions, i.e. `skbio.stats.composition.ilr` and `skbio.stats.composition.ilr_inv`.","created_at":"2016-06-28T16:39:13Z","updated_at":"2016-06-28T16:39:13Z","html_url":"https://github.com/biocore/scikit-bio/pull/1396#discussion_r68794111","pull_request_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396","_links":{"self":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments/68794111"},"html":{"href":"https://github.com/biocore/scikit-bio/pull/1396#discussion_r68794111"},"pull_request":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396"}}},"pull_request":{"url":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396","id":75185388,"html_url":"https://github.com/biocore/scikit-bio/pull/1396","diff_url":"https://github.com/biocore/scikit-bio/pull/1396.diff","patch_url":"https://github.com/biocore/scikit-bio/pull/1396.patch","issue_url":"https://api.github.com/repos/biocore/scikit-bio/issues/1396","number":1396,"state":"open","locked":false,"title":"ENH: Addressing #1393","user":{"login":"mortonjt","id":4184797,"avatar_url":"https://avatars.githubusercontent.com/u/4184797?v=3","gravatar_id":"","url":"https://api.github.com/users/mortonjt","html_url":"https://github.com/mortonjt","followers_url":"https://api.github.com/users/mortonjt/followers","following_url":"https://api.github.com/users/mortonjt/following{/other_user}","gists_url":"https://api.github.com/users/mortonjt/gists{/gist_id}","starred_url":"https://api.github.com/users/mortonjt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mortonjt/subscriptions","organizations_url":"https://api.github.com/users/mortonjt/orgs","repos_url":"https://api.github.com/users/mortonjt/repos","events_url":"https://api.github.com/users/mortonjt/events{/privacy}","received_events_url":"https://api.github.com/users/mortonjt/received_events","type":"User","site_admin":false},"body":"Fixing _check_orthogonality\r\nAddressing #1393","created_at":"2016-06-24T23:09:16Z","updated_at":"2016-06-28T16:39:13Z","closed_at":null,"merged_at":null,"merge_commit_sha":"d7fd662b83228b1089cb8ab2cf289b88be618942","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396/commits","review_comments_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396/comments","review_comment_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments{/number}","comments_url":"https://api.github.com/repos/biocore/scikit-bio/issues/1396/comments","statuses_url":"https://api.github.com/repos/biocore/scikit-bio/statuses/e1e1d294e5ee7bd500ab4ea3f2bb63d6828984a2","head":{"label":"mortonjt:composition","ref":"composition","sha":"e1e1d294e5ee7bd500ab4ea3f2bb63d6828984a2","user":{"login":"mortonjt","id":4184797,"avatar_url":"https://avatars.githubusercontent.com/u/4184797?v=3","gravatar_id":"","url":"https://api.github.com/users/mortonjt","html_url":"https://github.com/mortonjt","followers_url":"https://api.github.com/users/mortonjt/followers","following_url":"https://api.github.com/users/mortonjt/following{/other_user}","gists_url":"https://api.github.com/users/mortonjt/gists{/gist_id}","starred_url":"https://api.github.com/users/mortonjt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mortonjt/subscriptions","organizations_url":"https://api.github.com/users/mortonjt/orgs","repos_url":"https://api.github.com/users/mortonjt/repos","events_url":"https://api.github.com/users/mortonjt/events{/privacy}","received_events_url":"https://api.github.com/users/mortonjt/received_events","type":"User","site_admin":false},"repo":{"id":23898042,"name":"scikit-bio","full_name":"mortonjt/scikit-bio","owner":{"login":"mortonjt","id":4184797,"avatar_url":"https://avatars.githubusercontent.com/u/4184797?v=3","gravatar_id":"","url":"https://api.github.com/users/mortonjt","html_url":"https://github.com/mortonjt","followers_url":"https://api.github.com/users/mortonjt/followers","following_url":"https://api.github.com/users/mortonjt/following{/other_user}","gists_url":"https://api.github.com/users/mortonjt/gists{/gist_id}","starred_url":"https://api.github.com/users/mortonjt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mortonjt/subscriptions","organizations_url":"https://api.github.com/users/mortonjt/orgs","repos_url":"https://api.github.com/users/mortonjt/repos","events_url":"https://api.github.com/users/mortonjt/events{/privacy}","received_events_url":"https://api.github.com/users/mortonjt/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/mortonjt/scikit-bio","description":"Core objects, functions and statistics for working with biological data in Python.","fork":true,"url":"https://api.github.com/repos/mortonjt/scikit-bio","forks_url":"https://api.github.com/repos/mortonjt/scikit-bio/forks","keys_url":"https://api.github.com/repos/mortonjt/scikit-bio/keys{/key_id}","collaborators_url":"https://api.github.com/repos/mortonjt/scikit-bio/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/mortonjt/scikit-bio/teams","hooks_url":"https://api.github.com/repos/mortonjt/scikit-bio/hooks","issue_events_url":"https://api.github.com/repos/mortonjt/scikit-bio/issues/events{/number}","events_url":"https://api.github.com/repos/mortonjt/scikit-bio/events","assignees_url":"https://api.github.com/repos/mortonjt/scikit-bio/assignees{/user}","branches_url":"https://api.github.com/repos/mortonjt/scikit-bio/branches{/branch}","tags_url":"https://api.github.com/repos/mortonjt/scikit-bio/tags","blobs_url":"https://api.github.com/repos/mortonjt/scikit-bio/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/mortonjt/scikit-bio/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/mortonjt/scikit-bio/git/refs{/sha}","trees_url":"https://api.github.com/repos/mortonjt/scikit-bio/git/trees{/sha}","statuses_url":"https://api.github.com/repos/mortonjt/scikit-bio/statuses/{sha}","languages_url":"https://api.github.com/repos/mortonjt/scikit-bio/languages","stargazers_url":"https://api.github.com/repos/mortonjt/scikit-bio/stargazers","contributors_url":"https://api.github.com/repos/mortonjt/scikit-bio/contributors","subscribers_url":"https://api.github.com/repos/mortonjt/scikit-bio/subscribers","subscription_url":"https://api.github.com/repos/mortonjt/scikit-bio/subscription","commits_url":"https://api.github.com/repos/mortonjt/scikit-bio/commits{/sha}","git_commits_url":"https://api.github.com/repos/mortonjt/scikit-bio/git/commits{/sha}","comments_url":"https://api.github.com/repos/mortonjt/scikit-bio/comments{/number}","issue_comment_url":"https://api.github.com/repos/mortonjt/scikit-bio/issues/comments{/number}","contents_url":"https://api.github.com/repos/mortonjt/scikit-bio/contents/{+path}","compare_url":"https://api.github.com/repos/mortonjt/scikit-bio/compare/{base}...{head}","merges_url":"https://api.github.com/repos/mortonjt/scikit-bio/merges","archive_url":"https://api.github.com/repos/mortonjt/scikit-bio/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/mortonjt/scikit-bio/downloads","issues_url":"https://api.github.com/repos/mortonjt/scikit-bio/issues{/number}","pulls_url":"https://api.github.com/repos/mortonjt/scikit-bio/pulls{/number}","milestones_url":"https://api.github.com/repos/mortonjt/scikit-bio/milestones{/number}","notifications_url":"https://api.github.com/repos/mortonjt/scikit-bio/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/mortonjt/scikit-bio/labels{/name}","releases_url":"https://api.github.com/repos/mortonjt/scikit-bio/releases{/id}","deployments_url":"https://api.github.com/repos/mortonjt/scikit-bio/deployments","created_at":"2014-09-11T00:39:57Z","updated_at":"2016-02-11T20:54:32Z","pushed_at":"2016-06-24T23:08:41Z","git_url":"git://github.com/mortonjt/scikit-bio.git","ssh_url":"git@github.com:mortonjt/scikit-bio.git","clone_url":"https://github.com/mortonjt/scikit-bio.git","svn_url":"https://github.com/mortonjt/scikit-bio","homepage":"http://scikit-bio.org","size":36298,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"biocore:master","ref":"master","sha":"5f72809d04d89a7a9fa5fc613c284d9088aa1623","user":{"login":"biocore","id":6241857,"avatar_url":"https://avatars.githubusercontent.com/u/6241857?v=3","gravatar_id":"","url":"https://api.github.com/users/biocore","html_url":"https://github.com/biocore","followers_url":"https://api.github.com/users/biocore/followers","following_url":"https://api.github.com/users/biocore/following{/other_user}","gists_url":"https://api.github.com/users/biocore/gists{/gist_id}","starred_url":"https://api.github.com/users/biocore/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biocore/subscriptions","organizations_url":"https://api.github.com/users/biocore/orgs","repos_url":"https://api.github.com/users/biocore/repos","events_url":"https://api.github.com/users/biocore/events{/privacy}","received_events_url":"https://api.github.com/users/biocore/received_events","type":"Organization","site_admin":false},"repo":{"id":15168264,"name":"scikit-bio","full_name":"biocore/scikit-bio","owner":{"login":"biocore","id":6241857,"avatar_url":"https://avatars.githubusercontent.com/u/6241857?v=3","gravatar_id":"","url":"https://api.github.com/users/biocore","html_url":"https://github.com/biocore","followers_url":"https://api.github.com/users/biocore/followers","following_url":"https://api.github.com/users/biocore/following{/other_user}","gists_url":"https://api.github.com/users/biocore/gists{/gist_id}","starred_url":"https://api.github.com/users/biocore/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biocore/subscriptions","organizations_url":"https://api.github.com/users/biocore/orgs","repos_url":"https://api.github.com/users/biocore/repos","events_url":"https://api.github.com/users/biocore/events{/privacy}","received_events_url":"https://api.github.com/users/biocore/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/biocore/scikit-bio","description":"scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.","fork":false,"url":"https://api.github.com/repos/biocore/scikit-bio","forks_url":"https://api.github.com/repos/biocore/scikit-bio/forks","keys_url":"https://api.github.com/repos/biocore/scikit-bio/keys{/key_id}","collaborators_url":"https://api.github.com/repos/biocore/scikit-bio/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/biocore/scikit-bio/teams","hooks_url":"https://api.github.com/repos/biocore/scikit-bio/hooks","issue_events_url":"https://api.github.com/repos/biocore/scikit-bio/issues/events{/number}","events_url":"https://api.github.com/repos/biocore/scikit-bio/events","assignees_url":"https://api.github.com/repos/biocore/scikit-bio/assignees{/user}","branches_url":"https://api.github.com/repos/biocore/scikit-bio/branches{/branch}","tags_url":"https://api.github.com/repos/biocore/scikit-bio/tags","blobs_url":"https://api.github.com/repos/biocore/scikit-bio/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/biocore/scikit-bio/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/biocore/scikit-bio/git/refs{/sha}","trees_url":"https://api.github.com/repos/biocore/scikit-bio/git/trees{/sha}","statuses_url":"https://api.github.com/repos/biocore/scikit-bio/statuses/{sha}","languages_url":"https://api.github.com/repos/biocore/scikit-bio/languages","stargazers_url":"https://api.github.com/repos/biocore/scikit-bio/stargazers","contributors_url":"https://api.github.com/repos/biocore/scikit-bio/contributors","subscribers_url":"https://api.github.com/repos/biocore/scikit-bio/subscribers","subscription_url":"https://api.github.com/repos/biocore/scikit-bio/subscription","commits_url":"https://api.github.com/repos/biocore/scikit-bio/commits{/sha}","git_commits_url":"https://api.github.com/repos/biocore/scikit-bio/git/commits{/sha}","comments_url":"https://api.github.com/repos/biocore/scikit-bio/comments{/number}","issue_comment_url":"https://api.github.com/repos/biocore/scikit-bio/issues/comments{/number}","contents_url":"https://api.github.com/repos/biocore/scikit-bio/contents/{+path}","compare_url":"https://api.github.com/repos/biocore/scikit-bio/compare/{base}...{head}","merges_url":"https://api.github.com/repos/biocore/scikit-bio/merges","archive_url":"https://api.github.com/repos/biocore/scikit-bio/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/biocore/scikit-bio/downloads","issues_url":"https://api.github.com/repos/biocore/scikit-bio/issues{/number}","pulls_url":"https://api.github.com/repos/biocore/scikit-bio/pulls{/number}","milestones_url":"https://api.github.com/repos/biocore/scikit-bio/milestones{/number}","notifications_url":"https://api.github.com/repos/biocore/scikit-bio/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/biocore/scikit-bio/labels{/name}","releases_url":"https://api.github.com/repos/biocore/scikit-bio/releases{/id}","deployments_url":"https://api.github.com/repos/biocore/scikit-bio/deployments","created_at":"2013-12-13T16:24:41Z","updated_at":"2016-06-25T11:49:17Z","pushed_at":"2016-06-27T22:34:02Z","git_url":"git://github.com/biocore/scikit-bio.git","ssh_url":"git@github.com:biocore/scikit-bio.git","clone_url":"https://github.com/biocore/scikit-bio.git","svn_url":"https://github.com/biocore/scikit-bio","homepage":"http://scikit-bio.org","size":42888,"stargazers_count":215,"watchers_count":215,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":true,"forks_count":98,"mirror_url":null,"open_issues_count":160,"forks":98,"open_issues":160,"watchers":215,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396"},"html":{"href":"https://github.com/biocore/scikit-bio/pull/1396"},"issue":{"href":"https://api.github.com/repos/biocore/scikit-bio/issues/1396"},"comments":{"href":"https://api.github.com/repos/biocore/scikit-bio/issues/1396/comments"},"review_comments":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396/comments"},"review_comment":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/1396/commits"},"statuses":{"href":"https://api.github.com/repos/biocore/scikit-bio/statuses/e1e1d294e5ee7bd500ab4ea3f2bb63d6828984a2"}}}}
{"actor":{"display_login":"jairideout"}}