{"action":"created","issue":{"url":"https://api.github.com/repos/PATRIC3/patric3_website/issues/1226","repository_url":"https://api.github.com/repos/PATRIC3/patric3_website","labels_url":"https://api.github.com/repos/PATRIC3/patric3_website/issues/1226/labels{/name}","comments_url":"https://api.github.com/repos/PATRIC3/patric3_website/issues/1226/comments","events_url":"https://api.github.com/repos/PATRIC3/patric3_website/issues/1226/events","html_url":"https://github.com/PATRIC3/patric3_website/issues/1226","id":187391531,"number":1226,"title":"Request to add gene name to gmx file downloaded from RNASeq","user":{"login":"ARWattam","id":11475316,"avatar_url":"https://avatars.githubusercontent.com/u/11475316?v=3","gravatar_id":"","url":"https://api.github.com/users/ARWattam","html_url":"https://github.com/ARWattam","followers_url":"https://api.github.com/users/ARWattam/followers","following_url":"https://api.github.com/users/ARWattam/following{/other_user}","gists_url":"https://api.github.com/users/ARWattam/gists{/gist_id}","starred_url":"https://api.github.com/users/ARWattam/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ARWattam/subscriptions","organizations_url":"https://api.github.com/users/ARWattam/orgs","repos_url":"https://api.github.com/users/ARWattam/repos","events_url":"https://api.github.com/users/ARWattam/events{/privacy}","received_events_url":"https://api.github.com/users/ARWattam/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-11-04T17:22:05Z","updated_at":"2016-11-07T14:48:16Z","closed_at":null,"body":"User request from UF workshop:\r\nThe gmx file of the RNAseq result contains the log2 ratios, which is \r\ngreat. But it contains only the PATRIC IDs for each gene. In the DE results \r\nwe see the PATRIC ID and the name of the gene (examples: rcnA, yggS... of \r\nE. coli). Is it possible to have a gmx file including the gene name?"},"comment":{"url":"https://api.github.com/repos/PATRIC3/patric3_website/issues/comments/258854879","html_url":"https://github.com/PATRIC3/patric3_website/issues/1226#issuecomment-258854879","issue_url":"https://api.github.com/repos/PATRIC3/patric3_website/issues/1226","id":258854879,"user":{"login":"mshukla1","id":1236463,"avatar_url":"https://avatars.githubusercontent.com/u/1236463?v=3","gravatar_id":"","url":"https://api.github.com/users/mshukla1","html_url":"https://github.com/mshukla1","followers_url":"https://api.github.com/users/mshukla1/followers","following_url":"https://api.github.com/users/mshukla1/following{/other_user}","gists_url":"https://api.github.com/users/mshukla1/gists{/gist_id}","starred_url":"https://api.github.com/users/mshukla1/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mshukla1/subscriptions","organizations_url":"https://api.github.com/users/mshukla1/orgs","repos_url":"https://api.github.com/users/mshukla1/repos","events_url":"https://api.github.com/users/mshukla1/events{/privacy}","received_events_url":"https://api.github.com/users/mshukla1/received_events","type":"User","site_admin":false},"created_at":"2016-11-07T14:48:16Z","updated_at":"2016-11-07T14:48:16Z","body":"The gmx file is meant to be used as an input for the differential expression analysis service, hence, has a very specific format that doesn't support additional columns. I wouldn't recommend modifying that file. \r\n\r\nHowever, we can have another slightly expanded excel file available for download, which is more user friendly and contain additional attributes for genes, i.e. refseq locus tags, gene name, product, accession, coordinate etc. \r\n\r\n-Maulik"}}
{"actor":{"display_login":"mshukla1"}}