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I.e. warn a user if the PoN is not a good match to a case sample.\r\n\r\n#### ACNV\r\n- Phasing\r\n- Evaluation of phasing\r\n- Evaluation of updated list of het sites from Ignaty.\r\n\r\n#### WGS\r\n- Evaluation of GATK CNV for WGS\r\n- ACNV for WGS\r\n- Evaluation of GATK ACNV for WGS\r\n- GC correction and eval in WGS \r\n","creator":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"open_issues":44,"closed_issues":12,"state":"open","created_at":"2016-03-02T15:52:34Z","updated_at":"2016-06-16T18:54:07Z","due_on":"2016-07-30T04:00:00Z","closed_at":null},"comments":6,"created_at":"2016-06-16T18:54:07Z","updated_at":"2016-06-16T20:11:30Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/564","html_url":"https://github.com/broadinstitute/gatk-protected/pull/564","diff_url":"https://github.com/broadinstitute/gatk-protected/pull/564.diff","patch_url":"https://github.com/broadinstitute/gatk-protected/pull/564.patch"},"body":"Closes #563 "},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/comments/226599532","html_url":"https://github.com/broadinstitute/gatk-protected/pull/564#issuecomment-226599532","issue_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/564","id":226599532,"user":{"login":"samuelklee","id":11076296,"avatar_url":"https://avatars.githubusercontent.com/u/11076296?v=3","gravatar_id":"","url":"https://api.github.com/users/samuelklee","html_url":"https://github.com/samuelklee","followers_url":"https://api.github.com/users/samuelklee/followers","following_url":"https://api.github.com/users/samuelklee/following{/other_user}","gists_url":"https://api.github.com/users/samuelklee/gists{/gist_id}","starred_url":"https://api.github.com/users/samuelklee/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/samuelklee/subscriptions","organizations_url":"https://api.github.com/users/samuelklee/orgs","repos_url":"https://api.github.com/users/samuelklee/repos","events_url":"https://api.github.com/users/samuelklee/events{/privacy}","received_events_url":"https://api.github.com/users/samuelklee/received_events","type":"User","site_admin":false},"created_at":"2016-06-16T20:11:29Z","updated_at":"2016-06-16T20:11:29Z","body":"OK, good to squash and merge!"}}
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