{"action":"closed","issue":{"url":"https://api.github.com/repos/FelixKrueger/Bismark/issues/25","repository_url":"https://api.github.com/repos/FelixKrueger/Bismark","labels_url":"https://api.github.com/repos/FelixKrueger/Bismark/issues/25/labels{/name}","comments_url":"https://api.github.com/repos/FelixKrueger/Bismark/issues/25/comments","events_url":"https://api.github.com/repos/FelixKrueger/Bismark/issues/25/events","html_url":"https://github.com/FelixKrueger/Bismark/issues/25","id":132862734,"number":25,"title":"Bam file suitable for bismark_methylation_extractor","user":{"login":"Shicheng-Guo","id":6641283,"avatar_url":"https://avatars.githubusercontent.com/u/6641283?v=3","gravatar_id":"","url":"https://api.github.com/users/Shicheng-Guo","html_url":"https://github.com/Shicheng-Guo","followers_url":"https://api.github.com/users/Shicheng-Guo/followers","following_url":"https://api.github.com/users/Shicheng-Guo/following{/other_user}","gists_url":"https://api.github.com/users/Shicheng-Guo/gists{/gist_id}","starred_url":"https://api.github.com/users/Shicheng-Guo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Shicheng-Guo/subscriptions","organizations_url":"https://api.github.com/users/Shicheng-Guo/orgs","repos_url":"https://api.github.com/users/Shicheng-Guo/repos","events_url":"https://api.github.com/users/Shicheng-Guo/events{/privacy}","received_events_url":"https://api.github.com/users/Shicheng-Guo/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-02-11T00:52:42Z","updated_at":"2016-02-11T10:59:36Z","closed_at":"2016-02-11T10:59:36Z","body":"Do you think bismark_methylation_extractor will be working for all kind of bam files not only created by bismaker? Do you think the bam files created by BWA can also be used for methylation calling by bismark_methylation_extractor? "}}