{"action":"created","issue":{"url":"https://api.github.com/repos/nishihatapalmer/byteseek/issues/11","repository_url":"https://api.github.com/repos/nishihatapalmer/byteseek","labels_url":"https://api.github.com/repos/nishihatapalmer/byteseek/issues/11/labels{/name}","comments_url":"https://api.github.com/repos/nishihatapalmer/byteseek/issues/11/comments","events_url":"https://api.github.com/repos/nishihatapalmer/byteseek/issues/11/events","html_url":"https://github.com/nishihatapalmer/byteseek/issues/11","id":170090117,"number":11,"title":"Performance Issue with small alphabets and long texts","user":{"login":"almondtools","id":2934333,"avatar_url":"https://avatars.githubusercontent.com/u/2934333?v=3","gravatar_id":"","url":"https://api.github.com/users/almondtools","html_url":"https://github.com/almondtools","followers_url":"https://api.github.com/users/almondtools/followers","following_url":"https://api.github.com/users/almondtools/following{/other_user}","gists_url":"https://api.github.com/users/almondtools/gists{/gist_id}","starred_url":"https://api.github.com/users/almondtools/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/almondtools/subscriptions","organizations_url":"https://api.github.com/users/almondtools/orgs","repos_url":"https://api.github.com/users/almondtools/repos","events_url":"https://api.github.com/users/almondtools/events{/privacy}","received_events_url":"https://api.github.com/users/almondtools/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":46,"created_at":"2016-08-09T06:16:28Z","updated_at":"2016-09-12T12:42:08Z","closed_at":null,"body":"I tried to benchmark your library with [StringBench](https://github.com/almondtools/stringbench).\r\n\r\nYet there seems to be a performance issue with all of your implementations of `AbstractSequenceSearcher`.\r\n\r\nYou can reproduce this by \r\n- checking out StringBench\r\n- selecting BSBoyerMooreHorspoolIncubationTest.java\r\n- removing the `@Ignore`\r\n- starting the test\r\n\r\nI yet did not test it with any other parameters, so perhaps this performance issue is related to other scenarios, too.\r\n\r\nMaybe this issue is related to an incorrect test setup. If so please show me how to correct it."},"comment":{"url":"https://api.github.com/repos/nishihatapalmer/byteseek/issues/comments/246335043","html_url":"https://github.com/nishihatapalmer/byteseek/issues/11#issuecomment-246335043","issue_url":"https://api.github.com/repos/nishihatapalmer/byteseek/issues/11","id":246335043,"user":{"login":"nishihatapalmer","id":4427300,"avatar_url":"https://avatars.githubusercontent.com/u/4427300?v=3","gravatar_id":"","url":"https://api.github.com/users/nishihatapalmer","html_url":"https://github.com/nishihatapalmer","followers_url":"https://api.github.com/users/nishihatapalmer/followers","following_url":"https://api.github.com/users/nishihatapalmer/following{/other_user}","gists_url":"https://api.github.com/users/nishihatapalmer/gists{/gist_id}","starred_url":"https://api.github.com/users/nishihatapalmer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nishihatapalmer/subscriptions","organizations_url":"https://api.github.com/users/nishihatapalmer/orgs","repos_url":"https://api.github.com/users/nishihatapalmer/repos","events_url":"https://api.github.com/users/nishihatapalmer/events{/privacy}","received_events_url":"https://api.github.com/users/nishihatapalmer/received_events","type":"User","site_admin":false},"created_at":"2016-09-12T12:42:07Z","updated_at":"2016-09-12T12:42:07Z","body":"Great,  I'll check it out!\n\nCheers\n\nMatt\n\nOn 11 Sep 2016 19:17, \"Stefan Mandel\" <notifications@github.com> wrote:\n\n> Hello Matt,\n>\n> Now a working benchmark is online, here an excerpt of the performance for\n> an alphabet size of 32 and a pattern size of 32:\n>\n> name,family,number,alphabet,pattern,time\n> BSBoyerMooreHorspool,SUFFIX,1,32,32,499.868265\n> BSHorspoolFinalFlag,SUFFIX,1,32,32,514.874054\n> BSSunday,SUFFIX,1,32,32,523.536243\n> JavaIndexOf,NAIVE,1,32,32,1044.936366\n> JavaRegex,SUFFIX,1,32,32,896.213711\n> SCBNDM,FACTOR,1,32,32,808.651137\n> SCBOM,FACTOR,1,32,32,886.547606\n> SCHorspool,SUFFIX,1,32,32,739.143626\n> SCKnuthMorrisPratt,PREFIX,1,32,32,3716.777362\n> SCShiftAnd,PREFIX,1,32,32,3612.73296\n> SCSunday,SUFFIX,1,32,32,841.144946\n>\n> If you want to generate such csvs for other params, use the ProcessResults\n> class:\n> java ProcessResults 1 .\n>\n> Regards,\n>\n> Stefan\n>\n> —\n> You are receiving this because you commented.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/nishihatapalmer/byteseek/issues/11#issuecomment-246195004>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AEOOJC9GaNQhfD0QG1a-WHOh-0U8EB8fks5qpEWggaJpZM4JfwD4>\n> .\n>\n"}}
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