{"action":"created","issue":{"url":"https://api.github.com/repos/RTCGA/RTCGA/issues/97","repository_url":"https://api.github.com/repos/RTCGA/RTCGA","labels_url":"https://api.github.com/repos/RTCGA/RTCGA/issues/97/labels{/name}","comments_url":"https://api.github.com/repos/RTCGA/RTCGA/issues/97/comments","events_url":"https://api.github.com/repos/RTCGA/RTCGA/issues/97/events","html_url":"https://github.com/RTCGA/RTCGA/issues/97","id":190500902,"number":97,"title":"Survival plots against genes expression in RTCGA","user":{"login":"MarcinKosinski","id":6773454,"avatar_url":"https://avatars.githubusercontent.com/u/6773454?v=3","gravatar_id":"","url":"https://api.github.com/users/MarcinKosinski","html_url":"https://github.com/MarcinKosinski","followers_url":"https://api.github.com/users/MarcinKosinski/followers","following_url":"https://api.github.com/users/MarcinKosinski/following{/other_user}","gists_url":"https://api.github.com/users/MarcinKosinski/gists{/gist_id}","starred_url":"https://api.github.com/users/MarcinKosinski/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MarcinKosinski/subscriptions","organizations_url":"https://api.github.com/users/MarcinKosinski/orgs","repos_url":"https://api.github.com/users/MarcinKosinski/repos","events_url":"https://api.github.com/users/MarcinKosinski/events{/privacy}","received_events_url":"https://api.github.com/users/MarcinKosinski/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-11-19T15:04:06Z","updated_at":"2016-11-20T01:45:50Z","closed_at":null,"body":"> Hi Marcin and RTCGA team,\r\n\r\n> Thanks a lot for the wonderful RTCGA package. \r\n\r\n> I wanted to know if its possible to use merged clinical data from multiple cancer type to look at survival data for a gene set, I am trying to make KM plots by using dataset for many cancer types at the same time using a set of genes. I am aware that RTCGA package facilitates making Cox hazard model that integrates mutation data with clinical data but that doesn't allow using data from multiple cancer types but allows use of one cancer type at a time. \r\nI will greatly appreciate any help. Thanks in advance."},"comment":{"url":"https://api.github.com/repos/RTCGA/RTCGA/issues/comments/261752504","html_url":"https://github.com/RTCGA/RTCGA/issues/97#issuecomment-261752504","issue_url":"https://api.github.com/repos/RTCGA/RTCGA/issues/97","id":261752504,"user":{"login":"rg-code","id":6352142,"avatar_url":"https://avatars.githubusercontent.com/u/6352142?v=3","gravatar_id":"","url":"https://api.github.com/users/rg-code","html_url":"https://github.com/rg-code","followers_url":"https://api.github.com/users/rg-code/followers","following_url":"https://api.github.com/users/rg-code/following{/other_user}","gists_url":"https://api.github.com/users/rg-code/gists{/gist_id}","starred_url":"https://api.github.com/users/rg-code/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rg-code/subscriptions","organizations_url":"https://api.github.com/users/rg-code/orgs","repos_url":"https://api.github.com/users/rg-code/repos","events_url":"https://api.github.com/users/rg-code/events{/privacy}","received_events_url":"https://api.github.com/users/rg-code/received_events","type":"User","site_admin":false},"created_at":"2016-11-20T01:45:50Z","updated_at":"2016-11-20T01:45:50Z","body":"@MarcinKosinski \r\n\r\nThanks a lot for prompt response, while this is extremely helpful I was trying to integrate mutation data (TCGA MAF files) with survival. I am trying to make KM plots across all TCGA cancer type at the same time by looking at a set of genes, so for example if 1000 patients from pan TCGA cohort have mutations for all the genes in my gene set, survival of those patient will be compared with the remaining patients in pan TCGA cohort to produce KM plots."}}
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