{"action":"created","issue":{"url":"https://api.github.com/repos/igvteam/igv/issues/275","repository_url":"https://api.github.com/repos/igvteam/igv","labels_url":"https://api.github.com/repos/igvteam/igv/issues/275/labels{/name}","comments_url":"https://api.github.com/repos/igvteam/igv/issues/275/comments","events_url":"https://api.github.com/repos/igvteam/igv/issues/275/events","html_url":"https://github.com/igvteam/igv/issues/275","id":164597349,"number":275,"title":"Support for 10X linked reads","user":{"login":"jrobinso","id":933148,"avatar_url":"https://avatars.githubusercontent.com/u/933148?v=3","gravatar_id":"","url":"https://api.github.com/users/jrobinso","html_url":"https://github.com/jrobinso","followers_url":"https://api.github.com/users/jrobinso/followers","following_url":"https://api.github.com/users/jrobinso/following{/other_user}","gists_url":"https://api.github.com/users/jrobinso/gists{/gist_id}","starred_url":"https://api.github.com/users/jrobinso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jrobinso/subscriptions","organizations_url":"https://api.github.com/users/jrobinso/orgs","repos_url":"https://api.github.com/users/jrobinso/repos","events_url":"https://api.github.com/users/jrobinso/events{/privacy}","received_events_url":"https://api.github.com/users/jrobinso/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":13,"created_at":"2016-07-08T19:12:17Z","updated_at":"2016-07-13T18:42:42Z","closed_at":null,"body":"This is an open issue for discussing enhanced support for 10x barcoded BAM files.  As a starting point we'll aim to implement support for a \"Loupe\" style phased/linked read view by leveraging the existing group & color-by options with the 10X Bam tags described here:  http://software.10xgenomics.com/genome-exome/pipelines/latest/output/bam.   "},"comment":{"url":"https://api.github.com/repos/igvteam/igv/issues/comments/232448876","html_url":"https://github.com/igvteam/igv/issues/275#issuecomment-232448876","issue_url":"https://api.github.com/repos/igvteam/igv/issues/275","id":232448876,"user":{"login":"jrobinso","id":933148,"avatar_url":"https://avatars.githubusercontent.com/u/933148?v=3","gravatar_id":"","url":"https://api.github.com/users/jrobinso","html_url":"https://github.com/jrobinso","followers_url":"https://api.github.com/users/jrobinso/followers","following_url":"https://api.github.com/users/jrobinso/following{/other_user}","gists_url":"https://api.github.com/users/jrobinso/gists{/gist_id}","starred_url":"https://api.github.com/users/jrobinso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jrobinso/subscriptions","organizations_url":"https://api.github.com/users/jrobinso/orgs","repos_url":"https://api.github.com/users/jrobinso/repos","events_url":"https://api.github.com/users/jrobinso/events{/privacy}","received_events_url":"https://api.github.com/users/jrobinso/received_events","type":"User","site_admin":false},"created_at":"2016-07-13T18:42:42Z","updated_at":"2016-07-13T18:42:42Z","body":"I just pushed the change to \"link then group\".  It makes a difference for larger SVs, obviously.   Attached is before and after pngs for an inversion (before is group_then_link, after link_then_group)\r\n![group_then_link](https://cloud.githubusercontent.com/assets/933148/16815484/d72c9e52-48ee-11e6-9758-b089af4c6146.png)\r\n![link_then_group](https://cloud.githubusercontent.com/assets/933148/16815489/dd7cb986-48ee-11e6-8953-13e40facd498.png)\r\n\r\n"}}
{"actor":{"display_login":"jrobinso"}}