{"action":"created","issue":{"url":"https://api.github.com/repos/mzmine/mzmine2/issues/165","labels_url":"https://api.github.com/repos/mzmine/mzmine2/issues/165/labels{/name}","comments_url":"https://api.github.com/repos/mzmine/mzmine2/issues/165/comments","events_url":"https://api.github.com/repos/mzmine/mzmine2/issues/165/events","html_url":"https://github.com/mzmine/mzmine2/issues/165","id":127473999,"number":165,"title":"mzTab import - raw data import","user":{"login":"photocyte","id":12517705,"avatar_url":"https://avatars.githubusercontent.com/u/12517705?v=3","gravatar_id":"","url":"https://api.github.com/users/photocyte","html_url":"https://github.com/photocyte","followers_url":"https://api.github.com/users/photocyte/followers","following_url":"https://api.github.com/users/photocyte/following{/other_user}","gists_url":"https://api.github.com/users/photocyte/gists{/gist_id}","starred_url":"https://api.github.com/users/photocyte/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/photocyte/subscriptions","organizations_url":"https://api.github.com/users/photocyte/orgs","repos_url":"https://api.github.com/users/photocyte/repos","events_url":"https://api.github.com/users/photocyte/events{/privacy}","received_events_url":"https://api.github.com/users/photocyte/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-01-19T15:43:06Z","updated_at":"2016-01-20T14:25:51Z","closed_at":null,"body":"When importing mzTab there is a checkbox to also import the raw data.  In my case, on windows, when the .raw and .mzTab are in the same directory, MZmine seems to not find the appropriate .raw file & uses produces a placeholder raw data file in the GUI instead of the appropriate raw data.  In the mzTab the .raw file path is specified relatively, perhaps this could be the cause? "},"comment":{"url":"https://api.github.com/repos/mzmine/mzmine2/issues/comments/173219650","html_url":"https://github.com/mzmine/mzmine2/issues/165#issuecomment-173219650","issue_url":"https://api.github.com/repos/mzmine/mzmine2/issues/165","id":173219650,"user":{"login":"tomas-pluskal","id":1796692,"avatar_url":"https://avatars.githubusercontent.com/u/1796692?v=3","gravatar_id":"","url":"https://api.github.com/users/tomas-pluskal","html_url":"https://github.com/tomas-pluskal","followers_url":"https://api.github.com/users/tomas-pluskal/followers","following_url":"https://api.github.com/users/tomas-pluskal/following{/other_user}","gists_url":"https://api.github.com/users/tomas-pluskal/gists{/gist_id}","starred_url":"https://api.github.com/users/tomas-pluskal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tomas-pluskal/subscriptions","organizations_url":"https://api.github.com/users/tomas-pluskal/orgs","repos_url":"https://api.github.com/users/tomas-pluskal/repos","events_url":"https://api.github.com/users/tomas-pluskal/events{/privacy}","received_events_url":"https://api.github.com/users/tomas-pluskal/received_events","type":"User","site_admin":false},"created_at":"2016-01-20T14:25:51Z","updated_at":"2016-01-20T14:25:51Z","body":"Thomas, I think @photocyte is talking about .mzTab files that were exported from MZmine, and then imported again back to MZmine. It seems the full path to the raw data file is not added to the .mzTab file when it is exported, and that is why it fails."}}