{"action":"opened","issue":{"url":"https://api.github.com/repos/kdahlquist/GRNmap/issues/289","repository_url":"https://api.github.com/repos/kdahlquist/GRNmap","labels_url":"https://api.github.com/repos/kdahlquist/GRNmap/issues/289/labels{/name}","comments_url":"https://api.github.com/repos/kdahlquist/GRNmap/issues/289/comments","events_url":"https://api.github.com/repos/kdahlquist/GRNmap/issues/289/events","html_url":"https://github.com/kdahlquist/GRNmap/issues/289","id":190863743,"number":289,"title":"threshold_b should be 0 if there are no inputs controlling that gene","user":{"login":"kdahlquist","id":6463867,"avatar_url":"https://avatars.githubusercontent.com/u/6463867?v=3","gravatar_id":"","url":"https://api.github.com/users/kdahlquist","html_url":"https://github.com/kdahlquist","followers_url":"https://api.github.com/users/kdahlquist/followers","following_url":"https://api.github.com/users/kdahlquist/following{/other_user}","gists_url":"https://api.github.com/users/kdahlquist/gists{/gist_id}","starred_url":"https://api.github.com/users/kdahlquist/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kdahlquist/subscriptions","organizations_url":"https://api.github.com/users/kdahlquist/orgs","repos_url":"https://api.github.com/users/kdahlquist/repos","events_url":"https://api.github.com/users/kdahlquist/events{/privacy}","received_events_url":"https://api.github.com/users/kdahlquist/received_events","type":"User","site_admin":false},"labels":[{"id":129782405,"url":"https://api.github.com/repos/kdahlquist/GRNmap/labels/bug","name":"bug","color":"fc2929","default":true},{"id":357234901,"url":"https://api.github.com/repos/kdahlquist/GRNmap/labels/coding","name":"coding","color":"fbca04","default":false},{"id":130673294,"url":"https://api.github.com/repos/kdahlquist/GRNmap/labels/priority%200.5","name":"priority 0.5","color":"fad8c7","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-11-21T23:15:51Z","updated_at":"2016-11-21T23:15:51Z","closed_at":null,"body":"@Nwilli31 found that in the output for the dCIN5 network, there is a value for threhold_b for a gene that does not have any controllers.  For a gene that has no controllers, b should not be estimated and should have a value of 0.  It looks like the production rate is being copied into that cell in the output file and then there is a zero to the immediate right to it.  Hopefully this is just a problem with writing the output and not with the computation.\r\n\r\nSample files demonstrating the bug will be forthcoming."}}
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