{"action":"opened","issue":{"url":"https://api.github.com/repos/nservant/HiC-Pro/issues/68","repository_url":"https://api.github.com/repos/nservant/HiC-Pro","labels_url":"https://api.github.com/repos/nservant/HiC-Pro/issues/68/labels{/name}","comments_url":"https://api.github.com/repos/nservant/HiC-Pro/issues/68/comments","events_url":"https://api.github.com/repos/nservant/HiC-Pro/issues/68/events","html_url":"https://github.com/nservant/HiC-Pro/issues/68","id":191196955,"number":68,"title":"Error in Bowtie alignment","user":{"login":"Rhine86","id":3023363,"avatar_url":"https://avatars.githubusercontent.com/u/3023363?v=3","gravatar_id":"","url":"https://api.github.com/users/Rhine86","html_url":"https://github.com/Rhine86","followers_url":"https://api.github.com/users/Rhine86/followers","following_url":"https://api.github.com/users/Rhine86/following{/other_user}","gists_url":"https://api.github.com/users/Rhine86/gists{/gist_id}","starred_url":"https://api.github.com/users/Rhine86/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Rhine86/subscriptions","organizations_url":"https://api.github.com/users/Rhine86/orgs","repos_url":"https://api.github.com/users/Rhine86/repos","events_url":"https://api.github.com/users/Rhine86/events{/privacy}","received_events_url":"https://api.github.com/users/Rhine86/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-11-23T06:27:58Z","updated_at":"2016-11-23T06:27:58Z","closed_at":null,"body":"Hi,\r\n\r\nWhen running HiC-Pro with the test data, I encounter an error like this:\r\n\r\nRun HiC-Pro 2.7.9\r\n--------------------------------------------\r\nBowtie2 alignment step1 ...\r\n/home/yzhang/Software/HiC-Pro_2.7.9/scripts/bowtie_wrap.sh -c /home/yzhang/projects/HiC/config_test_latest_edit.txt -u >> hicpro.log\r\n--------------------------------------------\r\nBowtie2 alignment step2 ...\r\n/home/yzhang/Software/HiC-Pro_2.7.9/scripts/bowtie_wrap.sh -c /home/yzhang/projects/HiC/config_test_latest_edit.txt -l >> hicpro.log\r\nExit: Error in Bowtie alignment\r\nmake: *** [bowtie_local] Error 1\r\n\r\nreal\t0m51.381s\r\nuser\t2m24.650s\r\nsys\t0m39.616s\r\n\r\nThe only changes I have done were:\r\nBOWTIE2_IDX_PATH = /pub/iGenomes/Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index\r\nREFERENCE_GENOME = genome\r\n\r\nAny help will be highly appreciated, Thank you.\r\n\r\nYan"}}
{"actor":{"display_login":"Rhine86"}}