{"action":"created","issue":{"url":"https://api.github.com/repos/bgruening/galaxytools/issues/388","repository_url":"https://api.github.com/repos/bgruening/galaxytools","labels_url":"https://api.github.com/repos/bgruening/galaxytools/issues/388/labels{/name}","comments_url":"https://api.github.com/repos/bgruening/galaxytools/issues/388/comments","events_url":"https://api.github.com/repos/bgruening/galaxytools/issues/388/events","html_url":"https://github.com/bgruening/galaxytools/issues/388","id":170848529,"number":388,"title":"rnacommender Fatal error: Exit code 1 ()","user":{"login":"scholtalbers","id":102411,"avatar_url":"https://avatars.githubusercontent.com/u/102411?v=3","gravatar_id":"","url":"https://api.github.com/users/scholtalbers","html_url":"https://github.com/scholtalbers","followers_url":"https://api.github.com/users/scholtalbers/followers","following_url":"https://api.github.com/users/scholtalbers/following{/other_user}","gists_url":"https://api.github.com/users/scholtalbers/gists{/gist_id}","starred_url":"https://api.github.com/users/scholtalbers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scholtalbers/subscriptions","organizations_url":"https://api.github.com/users/scholtalbers/orgs","repos_url":"https://api.github.com/users/scholtalbers/repos","events_url":"https://api.github.com/users/scholtalbers/events{/privacy}","received_events_url":"https://api.github.com/users/scholtalbers/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-08-12T11:04:28Z","updated_at":"2016-08-12T11:39:03Z","closed_at":null,"body":"I just tried to install and run rnacommender from the main toolshed. Installation went fine (without any dependencies?). \r\nBut upon running the tool it exits with a \"Fatal error: Exit code 1 ()\". This is caused, by the somewhat odd init.sh script that looks for a directory in the **job working directory** and than downloads the required data - which on our server fails.\r\n\r\nShouldn't the init script just be run once after installing, instead of on every tool run?"},"comment":{"url":"https://api.github.com/repos/bgruening/galaxytools/issues/comments/239425062","html_url":"https://github.com/bgruening/galaxytools/issues/388#issuecomment-239425062","issue_url":"https://api.github.com/repos/bgruening/galaxytools/issues/388","id":239425062,"user":{"login":"scholtalbers","id":102411,"avatar_url":"https://avatars.githubusercontent.com/u/102411?v=3","gravatar_id":"","url":"https://api.github.com/users/scholtalbers","html_url":"https://github.com/scholtalbers","followers_url":"https://api.github.com/users/scholtalbers/followers","following_url":"https://api.github.com/users/scholtalbers/following{/other_user}","gists_url":"https://api.github.com/users/scholtalbers/gists{/gist_id}","starred_url":"https://api.github.com/users/scholtalbers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scholtalbers/subscriptions","organizations_url":"https://api.github.com/users/scholtalbers/orgs","repos_url":"https://api.github.com/users/scholtalbers/repos","events_url":"https://api.github.com/users/scholtalbers/events{/privacy}","received_events_url":"https://api.github.com/users/scholtalbers/received_events","type":"User","site_admin":false},"created_at":"2016-08-12T11:39:03Z","updated_at":"2016-08-12T11:39:03Z","body":"Error is below (from the hide.txt). The script downloads a tar of ~350mb..(or at least tries)\r\nThe thing is that is should probably not check for the availability of the data in the working directory, but rather in the tool or tool-data directory.\r\n\r\n```\r\n>cat hide.txt \r\n--2016-08-12 12:56:39--  http://www.googledrive.com/host/0B9v5_ppcfmgWNTJzVjlkc0pCMVU\r\nResolving www.googledrive.com... 216.58.208.33, 2a00:1450:4001:815::2001\r\nConnecting to www.googledrive.com|216.58.208.33|:80... connected.\r\nHTTP request sent, awaiting response... 301 Moved Permanently\r\nLocation: https://www.googledrive.com/host/0B9v5_ppcfmgWNTJzVjlkc0pCMVU [following]\r\n--2016-08-12 12:56:40--  https://www.googledrive.com/host/0B9v5_ppcfmgWNTJzVjlkc0pCMVU\r\nConnecting to www.googledrive.com|216.58.208.33|:443... connected.\r\nERROR: certificate common name `*.googleusercontent.com' doesn't match requested host name `www.googledrive.com'.\r\nTo connect to www.googledrive.com insecurely, use `--no-check-certificate'.\r\ntar: 0B9v5_ppcfmgWNTJzVjlkc0pCMVU: Cannot open: No such file or directory\r\ntar: Error is not recoverable: exiting now\r\nrm: cannot remove `0B9v5_ppcfmgWNTJzVjlkc0pCMVU': No such file or directory\r\n```"}}
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