{"action":"created","issue":{"url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1056","repository_url":"https://api.github.com/repos/BD2KGenomics/toil","labels_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1056/labels{/name}","comments_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1056/comments","events_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1056/events","html_url":"https://github.com/BD2KGenomics/toil/pull/1056","id":165154148,"number":1056,"title":"CWL: test update and fixes for v1.0 support","user":{"login":"chapmanb","id":39391,"avatar_url":"https://avatars.githubusercontent.com/u/39391?v=3","gravatar_id":"","url":"https://api.github.com/users/chapmanb","html_url":"https://github.com/chapmanb","followers_url":"https://api.github.com/users/chapmanb/followers","following_url":"https://api.github.com/users/chapmanb/following{/other_user}","gists_url":"https://api.github.com/users/chapmanb/gists{/gist_id}","starred_url":"https://api.github.com/users/chapmanb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chapmanb/subscriptions","organizations_url":"https://api.github.com/users/chapmanb/orgs","repos_url":"https://api.github.com/users/chapmanb/repos","events_url":"https://api.github.com/users/chapmanb/events{/privacy}","received_events_url":"https://api.github.com/users/chapmanb/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/BD2KGenomics/toil/labels/cwl","name":"cwl","color":"bfe5bf"},{"url":"https://api.github.com/repos/BD2KGenomics/toil/labels/documentation","name":"documentation","color":"bfe5bf"},{"url":"https://api.github.com/repos/BD2KGenomics/toil/labels/needs%20work","name":"needs work","color":"eb6420"}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":14,"created_at":"2016-07-12T18:58:50Z","updated_at":"2016-07-16T00:45:04Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/BD2KGenomics/toil/pulls/1056","html_url":"https://github.com/BD2KGenomics/toil/pull/1056","diff_url":"https://github.com/BD2KGenomics/toil/pull/1056.diff","patch_url":"https://github.com/BD2KGenomics/toil/pull/1056.patch"},"body":"Update of #1050 which I messed up trying to rebase.\r\n\r\nIn progress work towards v1.0 support. Current status, failing 19 out of\r\n72 unit tests.\r\n\r\n- Apply path/location fixes globally, required for v1.0 support\r\n  (which uses location) and back compatibility with CWL (which uses path).\r\n- Adjusts imports to match cwltool reorganization changes\r\n- Some functions use kwargs instead of default arguments\r\n  (single_job_executor, _init_job).\r\n- Changes from output to outputSource in job outputs.\r\n- Start of work to improve scatter support for valueFrom by applying\r\n  after scatter process. Still in progress.\r\n- Update internal CWL revsort test to v1.0 syntax\r\n- Update conformance test to v1.0"},"comment":{"url":"https://api.github.com/repos/BD2KGenomics/toil/issues/comments/233098639","html_url":"https://github.com/BD2KGenomics/toil/pull/1056#issuecomment-233098639","issue_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1056","id":233098639,"user":{"login":"hannes-ucsc","id":5143256,"avatar_url":"https://avatars.githubusercontent.com/u/5143256?v=3","gravatar_id":"","url":"https://api.github.com/users/hannes-ucsc","html_url":"https://github.com/hannes-ucsc","followers_url":"https://api.github.com/users/hannes-ucsc/followers","following_url":"https://api.github.com/users/hannes-ucsc/following{/other_user}","gists_url":"https://api.github.com/users/hannes-ucsc/gists{/gist_id}","starred_url":"https://api.github.com/users/hannes-ucsc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hannes-ucsc/subscriptions","organizations_url":"https://api.github.com/users/hannes-ucsc/orgs","repos_url":"https://api.github.com/users/hannes-ucsc/repos","events_url":"https://api.github.com/users/hannes-ucsc/events{/privacy}","received_events_url":"https://api.github.com/users/hannes-ucsc/received_events","type":"User","site_admin":false},"created_at":"2016-07-16T00:45:04Z","updated_at":"2016-07-16T00:45:04Z","body":"Jenkins, ok to test."}}
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