{"action":"opened","issue":{"url":"https://api.github.com/repos/genome/genome/issues/1551","repository_url":"https://api.github.com/repos/genome/genome","labels_url":"https://api.github.com/repos/genome/genome/issues/1551/labels{/name}","comments_url":"https://api.github.com/repos/genome/genome/issues/1551/comments","events_url":"https://api.github.com/repos/genome/genome/issues/1551/events","html_url":"https://github.com/genome/genome/issues/1551","id":174615130,"number":1551,"title":"Refactor SummarizeTier1SnvSummary to use SnvIndelReport result","user":{"login":"jasonwalker80","id":884229,"avatar_url":"https://avatars.githubusercontent.com/u/884229?v=3","gravatar_id":"","url":"https://api.github.com/users/jasonwalker80","html_url":"https://github.com/jasonwalker80","followers_url":"https://api.github.com/users/jasonwalker80/followers","following_url":"https://api.github.com/users/jasonwalker80/following{/other_user}","gists_url":"https://api.github.com/users/jasonwalker80/gists{/gist_id}","starred_url":"https://api.github.com/users/jasonwalker80/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jasonwalker80/subscriptions","organizations_url":"https://api.github.com/users/jasonwalker80/orgs","repos_url":"https://api.github.com/users/jasonwalker80/repos","events_url":"https://api.github.com/users/jasonwalker80/events{/privacy}","received_events_url":"https://api.github.com/users/jasonwalker80/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-09-01T20:14:26Z","updated_at":"2016-09-01T20:14:26Z","closed_at":null,"body":"This step originally ran bam-readcount redundantly with the SnvIndelReport.  The original reworking of the ClinSeq workflow did NOT add this step back to the process.  If needed, the R script could be rewritten to use the existing read counts and VAFs in th SnvIndelReport.  Here is an example file:\r\n`/gscmnt/gc13001/info/model_data/9960e32e7f344f17b476b728ac487bb3/build24cd53cfd5ab449abb2e3991f846c2cd/BRC251/snv_indel_report/b1_q1/BRC251_final_filtered_coding.tsv`"}}
{"actor":{"display_login":"jasonwalker80"}}