{"action":"created","comment":{"url":"https://api.github.com/repos/cognoma/cancer-data/pulls/comments/74159773","id":74159773,"diff_hunk":"@@ -0,0 +1,515 @@\n+{\n+ \"cells\": [\n+  {\n+   \"cell_type\": \"markdown\",\n+   \"metadata\": {},\n+   \"source\": [\n+    \"### Convert mutation gene symbol labels to Entrez IDs  \\n\",\n+    \"Goal: Relabel the mutation data frame with Entrez IDs instead of gene names, by mapping a combination of chromosome and gene symbol to Entrez ID. The NCBI file downloaded and read in the next cell contains the Entrez ID - gene symbol pairs we will use to do so.\"","path":"mapping/PANCAN-mutation/map-mutations.ipynb","position":8,"original_position":8,"commit_id":"ac1da8cd3b857bb9f5abb96cd4f1326562e84f05","original_commit_id":"ac1da8cd3b857bb9f5abb96cd4f1326562e84f05","user":{"login":"gwaygenomics","id":7340421,"avatar_url":"https://avatars.githubusercontent.com/u/7340421?v=3","gravatar_id":"","url":"https://api.github.com/users/gwaygenomics","html_url":"https://github.com/gwaygenomics","followers_url":"https://api.github.com/users/gwaygenomics/followers","following_url":"https://api.github.com/users/gwaygenomics/following{/other_user}","gists_url":"https://api.github.com/users/gwaygenomics/gists{/gist_id}","starred_url":"https://api.github.com/users/gwaygenomics/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gwaygenomics/subscriptions","organizations_url":"https://api.github.com/users/gwaygenomics/orgs","repos_url":"https://api.github.com/users/gwaygenomics/repos","events_url":"https://api.github.com/users/gwaygenomics/events{/privacy}","received_events_url":"https://api.github.com/users/gwaygenomics/received_events","type":"User","site_admin":false},"body":"Can you clarify what you mean in the last sentence?","created_at":"2016-08-09T22:57:07Z","updated_at":"2016-08-09T22:57:07Z","html_url":"https://github.com/cognoma/cancer-data/pull/12#discussion_r74159773","pull_request_url":"https://api.github.com/repos/cognoma/cancer-data/pulls/12","_links":{"self":{"href":"https://api.github.com/repos/cognoma/cancer-data/pulls/comments/74159773"},"html":{"href":"https://github.com/cognoma/cancer-data/pull/12#discussion_r74159773"},"pull_request":{"href":"https://api.github.com/repos/cognoma/cancer-data/pulls/12"}}},"pull_request":{"url":"https://api.github.com/repos/cognoma/cancer-data/pulls/12","id":79046051,"html_url":"https://github.com/cognoma/cancer-data/pull/12","diff_url":"https://github.com/cognoma/cancer-data/pull/12.diff","patch_url":"https://github.com/cognoma/cancer-data/pull/12.patch","issue_url":"https://api.github.com/repos/cognoma/cancer-data/issues/12","number":12,"state":"open","locked":false,"title":"Map mutation gene symbols to Entrez IDs","user":{"login":"clairemcleod","id":7386742,"avatar_url":"https://avatars.githubusercontent.com/u/7386742?v=3","gravatar_id":"","url":"https://api.github.com/users/clairemcleod","html_url":"https://github.com/clairemcleod","followers_url":"https://api.github.com/users/clairemcleod/followers","following_url":"https://api.github.com/users/clairemcleod/following{/other_user}","gists_url":"https://api.github.com/users/clairemcleod/gists{/gist_id}","starred_url":"https://api.github.com/users/clairemcleod/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/clairemcleod/subscriptions","organizations_url":"https://api.github.com/users/clairemcleod/orgs","repos_url":"https://api.github.com/users/clairemcleod/repos","events_url":"https://api.github.com/users/clairemcleod/events{/privacy}","received_events_url":"https://api.github.com/users/clairemcleod/received_events","type":"User","site_admin":false},"body":"This pull requests addresses Issues #4 and #6. 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