{"action":"created","issue":{"url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology/issues/8","repository_url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology","labels_url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology/issues/8/labels{/name}","comments_url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology/issues/8/comments","events_url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology/issues/8/events","html_url":"https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/8","id":175632089,"number":8,"title":"obsolete: visceral muscle (as it is a cell type)","user":{"login":"cmungall","id":50745,"avatar_url":"https://avatars.githubusercontent.com/u/50745?v=3","gravatar_id":"","url":"https://api.github.com/users/cmungall","html_url":"https://github.com/cmungall","followers_url":"https://api.github.com/users/cmungall/followers","following_url":"https://api.github.com/users/cmungall/following{/other_user}","gists_url":"https://api.github.com/users/cmungall/gists{/gist_id}","starred_url":"https://api.github.com/users/cmungall/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmungall/subscriptions","organizations_url":"https://api.github.com/users/cmungall/orgs","repos_url":"https://api.github.com/users/cmungall/repos","events_url":"https://api.github.com/users/cmungall/events{/privacy}","received_events_url":"https://api.github.com/users/cmungall/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-09-07T23:40:22Z","updated_at":"2016-09-08T12:07:38Z","closed_at":null,"body":"\r\n```\r\n[Term]\r\nid: UBERON:6005070\r\nname: visceral muscle\r\nxref: FBbt:00005070\r\ndef: \"The visceral musculature comprises circular and longitudinal fibers which surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly.\" [FlyBase:FBrf0064793, FlyBase:FBrf0089570]\r\nis_a: CL:0000187 ! muscle cell\r\nrelationship: part_of UBERON:0000383 ! muscle system\r\n```\r\n\r\nso far we haven't put any cell types in the UBERON ID space - it complicates some things to do this.\r\n\r\nI can obsolete and add a consider to:\r\n\r\n```\r\n[Term]\r\nid: CL:0008007\r\nname: visceral muscle cell\r\ndef: \"A muscle cell that is part of some visceral muscle\" [GOC:dos]\r\nis_a: CL:0000187  ! muscle cell\r\n```\r\n\r\nbut this doesn't tell us in the OWL what a visceral muscle is.\r\n\r\nwe have had this horribly underspecified class in uberon for a while:\r\n\r\n```\r\n[Term]\r\nid: UBERON:0007094\r\nname: visceral musculature\r\nxref: BILA:0000132 ! visceral muculature\r\nis_a: UBERON:0000383 ! musculature of body\r\n```\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology/issues/comments/245577069","html_url":"https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/8#issuecomment-245577069","issue_url":"https://api.github.com/repos/obophenotype/insect_neuroanatomy_ontology/issues/8","id":245577069,"user":{"login":"mmc46","id":1872083,"avatar_url":"https://avatars.githubusercontent.com/u/1872083?v=3","gravatar_id":"","url":"https://api.github.com/users/mmc46","html_url":"https://github.com/mmc46","followers_url":"https://api.github.com/users/mmc46/followers","following_url":"https://api.github.com/users/mmc46/following{/other_user}","gists_url":"https://api.github.com/users/mmc46/gists{/gist_id}","starred_url":"https://api.github.com/users/mmc46/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mmc46/subscriptions","organizations_url":"https://api.github.com/users/mmc46/orgs","repos_url":"https://api.github.com/users/mmc46/repos","events_url":"https://api.github.com/users/mmc46/events{/privacy}","received_events_url":"https://api.github.com/users/mmc46/received_events","type":"User","site_admin":false},"created_at":"2016-09-08T12:07:38Z","updated_at":"2016-09-08T12:07:38Z","body":"At least in larva, visceral muscles are arranged as two layers of striated, mononucleated fibres."}}
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