{"action":"created","issue":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/896","repository_url":"https://api.github.com/repos/bigdatagenomics/adam","labels_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/896/labels{/name}","comments_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/896/comments","events_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/896/events","html_url":"https://github.com/bigdatagenomics/adam/issues/896","id":120852353,"number":896,"title":"error:  no reads in first split: bad BAM file or tiny split size?","user":{"login":"astewart-twist","id":14282772,"avatar_url":"https://avatars.githubusercontent.com/u/14282772?v=3","gravatar_id":"","url":"https://api.github.com/users/astewart-twist","html_url":"https://github.com/astewart-twist","followers_url":"https://api.github.com/users/astewart-twist/followers","following_url":"https://api.github.com/users/astewart-twist/following{/other_user}","gists_url":"https://api.github.com/users/astewart-twist/gists{/gist_id}","starred_url":"https://api.github.com/users/astewart-twist/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/astewart-twist/subscriptions","organizations_url":"https://api.github.com/users/astewart-twist/orgs","repos_url":"https://api.github.com/users/astewart-twist/repos","events_url":"https://api.github.com/users/astewart-twist/events{/privacy}","received_events_url":"https://api.github.com/users/astewart-twist/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-12-07T19:48:24Z","updated_at":"2016-02-25T22:36:31Z","closed_at":null,"body":"I keep receiving the following error while trying to convert a bam file into adam format.  \r\n\r\n```\r\njava.io.IOException: 'file:/my.bam': no reads in first split: bad BAM file or tiny split size?\r\n```\r\n\r\nAdditional info:\r\n\r\n * I'm able to run the small.sam test set\r\n * I've regenerated my bam file multiple times and checked for any kind of corruption, etc\r\n * I've repeated this experiment on both a local environment (spark in single machine mode), and in EMR.\r\n * spark-1.5.2-bin-hadoop2.6\r\n * adam-distribution_2.10-0.18.2\r\n * scala version 2.10.6\r\n\r\nFull stack trace: https://gist.github.com/astewart-twist/ceb36e492f96fe2a2500\r\n"},"comment":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/comments/189015037","html_url":"https://github.com/bigdatagenomics/adam/issues/896#issuecomment-189015037","issue_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/896","id":189015037,"user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"created_at":"2016-02-25T22:36:31Z","updated_at":"2016-02-25T22:36:31Z","body":"Nah, #962 would be output only, not input."}}