{"action":"created","issue":{"url":"https://api.github.com/repos/Sage-Bionetworks/Genie/issues/20","repository_url":"https://api.github.com/repos/Sage-Bionetworks/Genie","labels_url":"https://api.github.com/repos/Sage-Bionetworks/Genie/issues/20/labels{/name}","comments_url":"https://api.github.com/repos/Sage-Bionetworks/Genie/issues/20/comments","events_url":"https://api.github.com/repos/Sage-Bionetworks/Genie/issues/20/events","html_url":"https://github.com/Sage-Bionetworks/Genie/issues/20","id":187414425,"number":20,"title":"Missing t_alt_count and t_ref_count in mutation file","user":{"login":"thomasyu888","id":10556275,"avatar_url":"https://avatars.githubusercontent.com/u/10556275?v=3","gravatar_id":"","url":"https://api.github.com/users/thomasyu888","html_url":"https://github.com/thomasyu888","followers_url":"https://api.github.com/users/thomasyu888/followers","following_url":"https://api.github.com/users/thomasyu888/following{/other_user}","gists_url":"https://api.github.com/users/thomasyu888/gists{/gist_id}","starred_url":"https://api.github.com/users/thomasyu888/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thomasyu888/subscriptions","organizations_url":"https://api.github.com/users/thomasyu888/orgs","repos_url":"https://api.github.com/users/thomasyu888/repos","events_url":"https://api.github.com/users/thomasyu888/events{/privacy}","received_events_url":"https://api.github.com/users/thomasyu888/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-11-04T19:05:41Z","updated_at":"2016-11-08T00:58:32Z","closed_at":null,"body":"there are \"\" or \".\"  for around 1000 records in the MAF still\r\n\r\nwhich((genieMutData$t_alt_count==\".\")|(genieMutData$t_alt_count==\"\"))\r\nwhich((genieMutData$t_ref_count==\".\")|(genieMutData$t_ref_count==\"\"))\r\n\r\ncenters are GRCC MDA DFCI"},"comment":{"url":"https://api.github.com/repos/Sage-Bionetworks/Genie/issues/comments/259013241","html_url":"https://github.com/Sage-Bionetworks/Genie/issues/20#issuecomment-259013241","issue_url":"https://api.github.com/repos/Sage-Bionetworks/Genie/issues/20","id":259013241,"user":{"login":"kkdang","id":5033854,"avatar_url":"https://avatars.githubusercontent.com/u/5033854?v=3","gravatar_id":"","url":"https://api.github.com/users/kkdang","html_url":"https://github.com/kkdang","followers_url":"https://api.github.com/users/kkdang/followers","following_url":"https://api.github.com/users/kkdang/following{/other_user}","gists_url":"https://api.github.com/users/kkdang/gists{/gist_id}","starred_url":"https://api.github.com/users/kkdang/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kkdang/subscriptions","organizations_url":"https://api.github.com/users/kkdang/orgs","repos_url":"https://api.github.com/users/kkdang/repos","events_url":"https://api.github.com/users/kkdang/events{/privacy}","received_events_url":"https://api.github.com/users/kkdang/received_events","type":"User","site_admin":false},"created_at":"2016-11-08T00:58:32Z","updated_at":"2016-11-08T00:58:32Z","body":"@ckandoth: For VICC vcfs, these counts were not propagated by vcf2maf into the maf file, but the samples were excluded from the current release dataset due to lack of matching clinical information."}}
{"actor":{"display_login":"kkdang"}}