{"push_id":1001906272,"size":2,"distinct_size":2,"ref":"refs/heads/master","head":"2153800e6c2bb6b9a186f8e54fb3373a20b1986c","before":"07cf8eda20a8e8e8aa058d3d285ee302ec54fd3e","commits":[{"sha":"ca44f61338d49f4780b42140ab538348e2b177d1","author":{"email":"7b93ff48b1f852124f30ba21a7716d41b78ae9e1@mcgill.ca","name":"mbourgey"},"message":"make VcfEntry.java supports vcf format 4.2\n\nfrom vcf fromat pdf:\r\nALT - alternate base(s): Comma separated list of alternate non-reference alleles called on at least one of the\r\nsamples. Options are base Strings made up of the bases A,C,G,T,N,*, (case insensitive) or an angle-bracketed\r\nID String (“<ID>”) or a breakend replacement string as described in the section on breakends. The ‘*’ allele\r\nis reserved to indicate that the allele is missing due to a upstream deletion. If there are no alternative alleles,\r\nthen the missing value should be used. Tools processing VCF files are not required to preserve case in the\r\nallele String, except for IDs, which are case sensitive. (String; no whitespace, commas, or angle-brackets are\r\npermitted in the ID String itself)\r\n\r\nthe code was accepting \".\" which is not defined REF allele but not the official \"*\" allele for deletion","distinct":true,"url":"https://api.github.com/repos/pcingola/SnpEff/commits/ca44f61338d49f4780b42140ab538348e2b177d1"},{"sha":"2153800e6c2bb6b9a186f8e54fb3373a20b1986c","author":{"email":"96049d18eb0719c7bbbad3658c85ce015425f869@gmail.com","name":"Pablo Cingolani"},"message":"Merge pull request #127 from mbourgey/master\n\nmake VcfEntry.java supports vcf format 4.2","distinct":true,"url":"https://api.github.com/repos/pcingola/SnpEff/commits/2153800e6c2bb6b9a186f8e54fb3373a20b1986c"}]}