{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/444","repository_url":"https://api.github.com/repos/broadinstitute/gatk-protected","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/444/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/444/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/444/events","html_url":"https://github.com/broadinstitute/gatk-protected/pull/444","id":148415143,"number":444,"title":"\"Bayesian\" Het pulldown","user":{"login":"mbabadi","id":15305869,"avatar_url":"https://avatars.githubusercontent.com/u/15305869?v=3","gravatar_id":"","url":"https://api.github.com/users/mbabadi","html_url":"https://github.com/mbabadi","followers_url":"https://api.github.com/users/mbabadi/followers","following_url":"https://api.github.com/users/mbabadi/following{/other_user}","gists_url":"https://api.github.com/users/mbabadi/gists{/gist_id}","starred_url":"https://api.github.com/users/mbabadi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mbabadi/subscriptions","organizations_url":"https://api.github.com/users/mbabadi/orgs","repos_url":"https://api.github.com/users/mbabadi/repos","events_url":"https://api.github.com/users/mbabadi/events{/privacy}","received_events_url":"https://api.github.com/users/mbabadi/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/labels/Copy%20Number%20tools","name":"Copy Number tools","color":"207de5"},{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/labels/documentation","name":"documentation","color":"0052cc"},{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"vruano","id":791104,"avatar_url":"https://avatars.githubusercontent.com/u/791104?v=3","gravatar_id":"","url":"https://api.github.com/users/vruano","html_url":"https://github.com/vruano","followers_url":"https://api.github.com/users/vruano/followers","following_url":"https://api.github.com/users/vruano/following{/other_user}","gists_url":"https://api.github.com/users/vruano/gists{/gist_id}","starred_url":"https://api.github.com/users/vruano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vruano/subscriptions","organizations_url":"https://api.github.com/users/vruano/orgs","repos_url":"https://api.github.com/users/vruano/repos","events_url":"https://api.github.com/users/vruano/events{/privacy}","received_events_url":"https://api.github.com/users/vruano/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/7","html_url":"https://github.com/broadinstitute/gatk-protected/milestones/CNV%20Tools%20alpha-2%20release","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/7/labels","id":1392082,"number":7,"title":"CNV Tools alpha-2 release","description":"#### ACNV\r\n\r\n- ACNV improvements, incl. Allelic PoN, CN LOH caller, more plotting, and (if time permits) improving calling balanced segments\r\n- ACNV additional evaluations, incl. \"Amaro's evaluation\"\r\n- case-only ACNV (if time permits)\r\n\r\n#### Germline\r\n- Germline improvements to algorithm\r\n- Germline exome evaluation\r\n- Germline gene panel evaluation\r\n- Tagging germline events in GATK CNV results\r\n\r\n#### WGS\r\n- WGS workflow, including performance (RAM/CPU time) improvements with spark\r\n\r\n#### Other\r\n- GC correction and eval on exome\r\n- Refactoring of copious Target/ReadCount classes (see issues)\r\n\r\n\r\n\r\n\r\n","creator":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"open_issues":24,"closed_issues":27,"state":"open","created_at":"2015-11-03T19:42:51Z","updated_at":"2016-05-04T02:05:38Z","due_on":"2016-05-21T04:00:00Z","closed_at":null},"comments":14,"created_at":"2016-04-14T16:25:10Z","updated_at":"2016-05-04T16:57:22Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/pulls/444","html_url":"https://github.com/broadinstitute/gatk-protected/pull/444","diff_url":"https://github.com/broadinstitute/gatk-protected/pull/444.diff","patch_url":"https://github.com/broadinstitute/gatk-protected/pull/444.patch"},"body":"New Het pulldown tool. At the moment, this CLI tool is separate from the original one (GetHetCoverage). We will eventually either drop the old tool or merge it with this.\r\n\r\nCloses issue #56."},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/comments/216931191","html_url":"https://github.com/broadinstitute/gatk-protected/pull/444#issuecomment-216931191","issue_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/444","id":216931191,"user":{"login":"vruano","id":791104,"avatar_url":"https://avatars.githubusercontent.com/u/791104?v=3","gravatar_id":"","url":"https://api.github.com/users/vruano","html_url":"https://github.com/vruano","followers_url":"https://api.github.com/users/vruano/followers","following_url":"https://api.github.com/users/vruano/following{/other_user}","gists_url":"https://api.github.com/users/vruano/gists{/gist_id}","starred_url":"https://api.github.com/users/vruano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vruano/subscriptions","organizations_url":"https://api.github.com/users/vruano/orgs","repos_url":"https://api.github.com/users/vruano/repos","events_url":"https://api.github.com/users/vruano/events{/privacy}","received_events_url":"https://api.github.com/users/vruano/received_events","type":"User","site_admin":false},"created_at":"2016-05-04T16:57:22Z","updated_at":"2016-05-04T16:57:22Z","body":"Just a few changes required. No need to re-review, once you implement those and test pass just squash and merge. \r\n\r\nThank you, great work! \r\n\r\nBack to @mbabadi "}}