{"action":"created","issue":{"url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/101","labels_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/101/labels{/name}","comments_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/101/comments","events_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/101/events","html_url":"https://github.com/BgeeDB/expression-annotations/issues/101","id":125910701,"number":101,"title":"From GTEx IDs to SRX IDs","user":{"login":"mimiblis","id":13200045,"avatar_url":"https://avatars.githubusercontent.com/u/13200045?v=3","gravatar_id":"","url":"https://api.github.com/users/mimiblis","html_url":"https://github.com/mimiblis","followers_url":"https://api.github.com/users/mimiblis/followers","following_url":"https://api.github.com/users/mimiblis/following{/other_user}","gists_url":"https://api.github.com/users/mimiblis/gists{/gist_id}","starred_url":"https://api.github.com/users/mimiblis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mimiblis/subscriptions","organizations_url":"https://api.github.com/users/mimiblis/orgs","repos_url":"https://api.github.com/users/mimiblis/repos","events_url":"https://api.github.com/users/mimiblis/events{/privacy}","received_events_url":"https://api.github.com/users/mimiblis/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/BgeeDB/expression-annotations/labels/GTEx","name":"GTEx","color":"fad8c7"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-01-11T10:05:00Z","updated_at":"2016-01-11T10:06:50Z","closed_at":null,"body":"To make the pipeline run correctly we need SRX IDs for each samples. \r\nTo make this possible, I implemented Python scripts to:\r\n1. Retrieve the GTEx ID's for the samples we annotated\r\n2. On the rxtx (file : SraRunTable_SRA_data_10-07-2015), I could match the GTEx ID's for the sample of interest with their corresponding SRR ID's\r\n3. On these page (http://www.ebi.ac.uk/ena/data/view/SRP012682) I could match the SRR ID's to SRX ID's\r\n--> this is were I saw that only RNAseq samples have SRX ID's, thus that I discovered that in the GTEx sample file, there are mix of RNAseq, affy, illuminaOmni samples\r\n"},"comment":{"url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/comments/170496815","html_url":"https://github.com/BgeeDB/expression-annotations/issues/101#issuecomment-170496815","issue_url":"https://api.github.com/repos/BgeeDB/expression-annotations/issues/101","id":170496815,"user":{"login":"mimiblis","id":13200045,"avatar_url":"https://avatars.githubusercontent.com/u/13200045?v=3","gravatar_id":"","url":"https://api.github.com/users/mimiblis","html_url":"https://github.com/mimiblis","followers_url":"https://api.github.com/users/mimiblis/followers","following_url":"https://api.github.com/users/mimiblis/following{/other_user}","gists_url":"https://api.github.com/users/mimiblis/gists{/gist_id}","starred_url":"https://api.github.com/users/mimiblis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mimiblis/subscriptions","organizations_url":"https://api.github.com/users/mimiblis/orgs","repos_url":"https://api.github.com/users/mimiblis/repos","events_url":"https://api.github.com/users/mimiblis/events{/privacy}","received_events_url":"https://api.github.com/users/mimiblis/received_events","type":"User","site_admin":false},"created_at":"2016-01-11T10:06:50Z","updated_at":"2016-01-11T10:06:50Z","body":"@ANiknejad : is it well enough explained? or do you need more details ? :-)"}}