{"action":"created","issue":{"url":"https://api.github.com/repos/igvteam/igv/issues/251","repository_url":"https://api.github.com/repos/igvteam/igv","labels_url":"https://api.github.com/repos/igvteam/igv/issues/251/labels{/name}","comments_url":"https://api.github.com/repos/igvteam/igv/issues/251/comments","events_url":"https://api.github.com/repos/igvteam/igv/issues/251/events","html_url":"https://github.com/igvteam/igv/issues/251","id":158198737,"number":251,"title":"Can't get to mRNA feature information through \"Copy Details to Clipboard\"","user":{"login":"rmzelle","id":77951,"avatar_url":"https://avatars.githubusercontent.com/u/77951?v=3","gravatar_id":"","url":"https://api.github.com/users/rmzelle","html_url":"https://github.com/rmzelle","followers_url":"https://api.github.com/users/rmzelle/followers","following_url":"https://api.github.com/users/rmzelle/following{/other_user}","gists_url":"https://api.github.com/users/rmzelle/gists{/gist_id}","starred_url":"https://api.github.com/users/rmzelle/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rmzelle/subscriptions","organizations_url":"https://api.github.com/users/rmzelle/orgs","repos_url":"https://api.github.com/users/rmzelle/repos","events_url":"https://api.github.com/users/rmzelle/events{/privacy}","received_events_url":"https://api.github.com/users/rmzelle/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/igvteam/igv/milestones/3","html_url":"https://github.com/igvteam/igv/milestones/2.3.76","labels_url":"https://api.github.com/repos/igvteam/igv/milestones/3/labels","id":1808022,"number":3,"title":"2.3.76","description":"","creator":{"login":"jrobinso","id":933148,"avatar_url":"https://avatars.githubusercontent.com/u/933148?v=3","gravatar_id":"","url":"https://api.github.com/users/jrobinso","html_url":"https://github.com/jrobinso","followers_url":"https://api.github.com/users/jrobinso/followers","following_url":"https://api.github.com/users/jrobinso/following{/other_user}","gists_url":"https://api.github.com/users/jrobinso/gists{/gist_id}","starred_url":"https://api.github.com/users/jrobinso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jrobinso/subscriptions","organizations_url":"https://api.github.com/users/jrobinso/orgs","repos_url":"https://api.github.com/users/jrobinso/repos","events_url":"https://api.github.com/users/jrobinso/events{/privacy}","received_events_url":"https://api.github.com/users/jrobinso/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":1,"state":"open","created_at":"2016-06-03T21:43:43Z","updated_at":"2016-06-09T19:04:16Z","due_on":"2016-06-30T07:00:00Z","closed_at":null},"comments":3,"created_at":"2016-06-02T17:42:10Z","updated_at":"2016-06-12T03:09:10Z","closed_at":"2016-06-08T03:38:29Z","body":"With either Collapsed or Expanded view, I'm not able to access the \"mRNA\" feature information of genes through \"Copy Details to Clipboard\". My GFF3 file looks like:\r\n\r\n```\r\nscaffold12_size430423\tAUGUSTUS\tgene\t269342\t271066\t.\t+\t0\tID=x_g374;Name=GAL2\r\nscaffold12_size430423\tAUGUSTUS\tmRNA\t269342\t271066\t.\t+\t0\tID=x_g374.t1;Parent=x_g374;product=Galactose transporter;accession=P13181;translation=...\r\nscaffold12_size430423\tAUGUSTUS\texon\t269342\t271063\t0.92\t+\t0\tID=x_g374.t1.269342-exon;Parent=x_g374.t1\r\nscaffold12_size430423\tAUGUSTUS\tCDS\t269342\t271063\t0.92\t+\t0\tID=x_g374.t1.269342-CDS;Name=GAL2;Parent=x_g374.t1\r\n```\r\n\r\nThe popup text of the GAL2 gene above looks like this in Collapsed view:\r\n\r\n![image](https://cloud.githubusercontent.com/assets/77951/15754329/b9e1e292-28c5-11e6-89fe-381f1d85f6ca.png)\r\n\r\nBut when I use \"Copy Details to Clipboard\", I only get the popup text for the parent \"gene\" feature:\r\n\r\n> <b>GAL2</b>\r\nscaffold12_size430423:269342-271066\r\nType = gene\r\nid = x_g374\r\n\r\n> <b>ID</b>:&nbsp;x_g374<br/><b>Name</b>:&nbsp;GAL2<br/>\r\nscaffold12_size430423:269342-271066\r\n\r\nIn Expanded view, I can get the \"gene\" and \"exon\"/\"CDS\" feature information, but not the \"mRNA\" one.\r\n\r\nWouldn't it make more sense if IGV copied all the pop-up text in Collapsed view to the clipboard, and not just the pop-up text of a single feature."},"comment":{"url":"https://api.github.com/repos/igvteam/igv/issues/comments/225407216","html_url":"https://github.com/igvteam/igv/issues/251#issuecomment-225407216","issue_url":"https://api.github.com/repos/igvteam/igv/issues/251","id":225407216,"user":{"login":"jrobinso","id":933148,"avatar_url":"https://avatars.githubusercontent.com/u/933148?v=3","gravatar_id":"","url":"https://api.github.com/users/jrobinso","html_url":"https://github.com/jrobinso","followers_url":"https://api.github.com/users/jrobinso/followers","following_url":"https://api.github.com/users/jrobinso/following{/other_user}","gists_url":"https://api.github.com/users/jrobinso/gists{/gist_id}","starred_url":"https://api.github.com/users/jrobinso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jrobinso/subscriptions","organizations_url":"https://api.github.com/users/jrobinso/orgs","repos_url":"https://api.github.com/users/jrobinso/repos","events_url":"https://api.github.com/users/jrobinso/events{/privacy}","received_events_url":"https://api.github.com/users/jrobinso/received_events","type":"User","site_admin":false},"created_at":"2016-06-12T03:09:10Z","updated_at":"2016-06-12T03:09:10Z","body":"Could you file a separate issue for that.  Sometimes things like this \nget missed when multiple issues are combined in 1 ticket.\n\nAs a workaround you should be able to use the \"Show on click\" popup text \noption, then use ctrl-a / ctrl-c  (command-a / command-c) to copy the \ncontents to the clipboard.\n\n\n\nOn 6/11/16 8:23 PM, Rintze M. Zelle wrote:\n>\n> I just tried IGV 2.3.76, and I still don't get all the text from the \n> popup in the clipboard when I use \"Copy Details to Clipboard\".\n>\n> —\n> You are receiving this because you modified the open/close state.\n> Reply to this email directly, view it on GitHub \n> <https://github.com/igvteam/igv/issues/251#issuecomment-225401953>, or \n> mute the thread \n> <https://github.com/notifications/unsubscribe/AA49HAIykaFrnwbzGERVzcFmsbpnTYqcks5qK1F8gaJpZM4Iszbp>.\n>\n\n"}}
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