{"action":"created","issue":{"url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/issues/19","repository_url":"https://api.github.com/repos/simonsfoundation/inferelator_ng","labels_url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/issues/19/labels{/name}","comments_url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/issues/19/comments","events_url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/issues/19/events","html_url":"https://github.com/simonsfoundation/inferelator_ng/pull/19","id":171274593,"number":19,"title":"New workflows","user":{"login":"nickdeveaux","id":105398,"avatar_url":"https://avatars.githubusercontent.com/u/105398?v=3","gravatar_id":"","url":"https://api.github.com/users/nickdeveaux","html_url":"https://github.com/nickdeveaux","followers_url":"https://api.github.com/users/nickdeveaux/followers","following_url":"https://api.github.com/users/nickdeveaux/following{/other_user}","gists_url":"https://api.github.com/users/nickdeveaux/gists{/gist_id}","starred_url":"https://api.github.com/users/nickdeveaux/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nickdeveaux/subscriptions","organizations_url":"https://api.github.com/users/nickdeveaux/orgs","repos_url":"https://api.github.com/users/nickdeveaux/repos","events_url":"https://api.github.com/users/nickdeveaux/events{/privacy}","received_events_url":"https://api.github.com/users/nickdeveaux/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":25,"created_at":"2016-08-15T22:15:01Z","updated_at":"2016-08-24T17:31:17Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/pulls/19","html_url":"https://github.com/simonsfoundation/inferelator_ng/pull/19","diff_url":"https://github.com/simonsfoundation/inferelator_ng/pull/19.diff","patch_url":"https://github.com/simonsfoundation/inferelator_ng/pull/19.patch"},"body":"@AaronWatters @marioluisao @kostyat \r\nA demonstration workflow for B. Subtilis using TFA (in python), MI-CLR & BBSR (in R).\r\n\r\nWhile working on this, I discovered a problem in how we were creating design and response matrices in python: we weren't converting null values to NA properly. I added a test for that in test_design_response_R. \r\n\r\nThis highlights some of the pros and cons of our refactoring scheme. **Pros**: more modularity leads to simplicity in the bootstrap loop. The .run() functionality of the workflow is simple and concise. \r\n**Cons**: Having to maintain dependencies for the R code; limited transparency into the legacy R code. \r\n\r\nToDos: Right now, the output of the regression gets dumped into a timestamped output folder in the data/bsubtilis directory. It would be great to expand the emit_results function (@kostyat and I were talking about this today). Feel free to fork this branch \r\n"},"comment":{"url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/issues/comments/242146169","html_url":"https://github.com/simonsfoundation/inferelator_ng/pull/19#issuecomment-242146169","issue_url":"https://api.github.com/repos/simonsfoundation/inferelator_ng/issues/19","id":242146169,"user":{"login":"kostyat","id":9030159,"avatar_url":"https://avatars.githubusercontent.com/u/9030159?v=3","gravatar_id":"","url":"https://api.github.com/users/kostyat","html_url":"https://github.com/kostyat","followers_url":"https://api.github.com/users/kostyat/followers","following_url":"https://api.github.com/users/kostyat/following{/other_user}","gists_url":"https://api.github.com/users/kostyat/gists{/gist_id}","starred_url":"https://api.github.com/users/kostyat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kostyat/subscriptions","organizations_url":"https://api.github.com/users/kostyat/orgs","repos_url":"https://api.github.com/users/kostyat/repos","events_url":"https://api.github.com/users/kostyat/events{/privacy}","received_events_url":"https://api.github.com/users/kostyat/received_events","type":"User","site_admin":false},"created_at":"2016-08-24T17:31:17Z","updated_at":"2016-08-24T17:31:17Z","body":"Everything looks good to me (and runs without problems on my computer), and I like the network.tsv file output."}}
{"actor":{"display_login":"kostyat"}}