{"action":"created","issue":{"url":"https://api.github.com/repos/gmarcais/Jellyfish/issues/55","repository_url":"https://api.github.com/repos/gmarcais/Jellyfish","labels_url":"https://api.github.com/repos/gmarcais/Jellyfish/issues/55/labels{/name}","comments_url":"https://api.github.com/repos/gmarcais/Jellyfish/issues/55/comments","events_url":"https://api.github.com/repos/gmarcais/Jellyfish/issues/55/events","html_url":"https://github.com/gmarcais/Jellyfish/issues/55","id":139988575,"number":55,"title":"Parser interprets empty read as end-of-file","user":{"login":"rob-p","id":361470,"avatar_url":"https://avatars.githubusercontent.com/u/361470?v=3","gravatar_id":"","url":"https://api.github.com/users/rob-p","html_url":"https://github.com/rob-p","followers_url":"https://api.github.com/users/rob-p/followers","following_url":"https://api.github.com/users/rob-p/following{/other_user}","gists_url":"https://api.github.com/users/rob-p/gists{/gist_id}","starred_url":"https://api.github.com/users/rob-p/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rob-p/subscriptions","organizations_url":"https://api.github.com/users/rob-p/orgs","repos_url":"https://api.github.com/users/rob-p/repos","events_url":"https://api.github.com/users/rob-p/events{/privacy}","received_events_url":"https://api.github.com/users/rob-p/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-03-10T19:40:46Z","updated_at":"2016-03-11T15:50:34Z","closed_at":null,"body":"Hi Guillaume,\r\n\r\n  @roryk noticed this issue in RapMap (https://github.com/COMBINE-lab/RapMap/issues/19), and has a nice sample dataset to reproduce it.  Basically, when a read is empty, but not the actual end of the file, the parser thinks it's done.  Is there an easy way to change the parser logic to account for this situation?\r\n\r\n--Rob"},"comment":{"url":"https://api.github.com/repos/gmarcais/Jellyfish/issues/comments/195423479","html_url":"https://github.com/gmarcais/Jellyfish/issues/55#issuecomment-195423479","issue_url":"https://api.github.com/repos/gmarcais/Jellyfish/issues/55","id":195423479,"user":{"login":"rob-p","id":361470,"avatar_url":"https://avatars.githubusercontent.com/u/361470?v=3","gravatar_id":"","url":"https://api.github.com/users/rob-p","html_url":"https://github.com/rob-p","followers_url":"https://api.github.com/users/rob-p/followers","following_url":"https://api.github.com/users/rob-p/following{/other_user}","gists_url":"https://api.github.com/users/rob-p/gists{/gist_id}","starred_url":"https://api.github.com/users/rob-p/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rob-p/subscriptions","organizations_url":"https://api.github.com/users/rob-p/orgs","repos_url":"https://api.github.com/users/rob-p/repos","events_url":"https://api.github.com/users/rob-p/events{/privacy}","received_events_url":"https://api.github.com/users/rob-p/received_events","type":"User","site_admin":false},"created_at":"2016-03-11T15:50:34Z","updated_at":"2016-03-11T15:50:34Z","body":"Here I betray my strong CMake bias — what magical invocations must I make to generate a proper `configure` script?  I tried `aclocal && autoconf && automake --add-missing`."}}