{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate/issues/60","repository_url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate","labels_url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate/issues/60/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate/issues/60/comments","events_url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate/issues/60/events","html_url":"https://github.com/PacificBiosciences/FALCON-integrate/issues/60","id":158857155,"number":60,"title":"FALCON-integrate 0.6.3 - No module named pwatcher.mains","user":{"login":"fbemm","id":8361254,"avatar_url":"https://avatars.githubusercontent.com/u/8361254?v=3","gravatar_id":"","url":"https://api.github.com/users/fbemm","html_url":"https://github.com/fbemm","followers_url":"https://api.github.com/users/fbemm/followers","following_url":"https://api.github.com/users/fbemm/following{/other_user}","gists_url":"https://api.github.com/users/fbemm/gists{/gist_id}","starred_url":"https://api.github.com/users/fbemm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fbemm/subscriptions","organizations_url":"https://api.github.com/users/fbemm/orgs","repos_url":"https://api.github.com/users/fbemm/repos","events_url":"https://api.github.com/users/fbemm/events{/privacy}","received_events_url":"https://api.github.com/users/fbemm/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":14,"created_at":"2016-06-07T07:30:02Z","updated_at":"2016-06-07T15:49:50Z","closed_at":null,"body":"Pulled, compiled and started an assembly with 0.6.3 gives me:\r\n```\r\n[ERROR]Task Fred{'URL': 'task:///ebio/abt6_projects9/abt6_software/bin/FALCON-integrate/FALCON/falcon_kit/mains/run1.py/task_build_rdb'} failed with exit-code=99\r\n[INFO]Failure ('fail'). Joining 'task:///ebio/abt6_projects9/abt6_software/bin/FALCON-integrate/FALCON/falcon_kit/mains/run1.py/task_build_rdb'...\r\n...\r\nException: Caused by:\r\nTraceback (most recent call last):\r\n  File \"/ebio/abt6_projects9/abt6_software/bin/FALCON-integrate/pypeFLOW/pypeflow/controller.py\", line 523, in refreshTargets\r\n    rtn = self._refreshTargets(task2thread, objs = objs, callback = callback, updateFreq = updateFreq, exitOnFailure = exitOnFailure)\r\n  File \"/ebio/abt6_projects9/abt6_software/bin/FALCON-integrate/pypeFLOW/pypeflow/controller.py\", line 740, in _refreshTargets\r\n    raise TaskFailureError(\"Counted %d failure(s) with 0 successes so far.\" %failedJobCount)\r\nTaskFailureError: 'Counted 1 failure(s) with 0 successes so far.'\r\n```\r\npwatcher issues:\r\n```\r\n+ python -m pwatcher.mains.fs_heartbeat --directory=0-rawreads --heartbeat-file=mypwatcher/heartbeats/heartbeat-Jc1f0bbbd29bd8878cfbd16bdd68d84947a44db84c165f248749d241ee5bdb2bd --exit-file=mypwatcher/exits/exit-Jc1f0bbbd29bd8878cfbd16bdd68d84947a44db84c165f248749d241ee5bdb2bd --rate=1 /bin/bash prepare_rdb.sh\r\n#/usr/bin/python: No module named pwatcher.mains\r\n+ echo 99\r\n```\r\nAny idea?"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate/issues/comments/224324310","html_url":"https://github.com/PacificBiosciences/FALCON-integrate/issues/60#issuecomment-224324310","issue_url":"https://api.github.com/repos/PacificBiosciences/FALCON-integrate/issues/60","id":224324310,"user":{"login":"pb-cdunn","id":12086299,"avatar_url":"https://avatars.githubusercontent.com/u/12086299?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-cdunn","html_url":"https://github.com/pb-cdunn","followers_url":"https://api.github.com/users/pb-cdunn/followers","following_url":"https://api.github.com/users/pb-cdunn/following{/other_user}","gists_url":"https://api.github.com/users/pb-cdunn/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-cdunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-cdunn/subscriptions","organizations_url":"https://api.github.com/users/pb-cdunn/orgs","repos_url":"https://api.github.com/users/pb-cdunn/repos","events_url":"https://api.github.com/users/pb-cdunn/events{/privacy}","received_events_url":"https://api.github.com/users/pb-cdunn/received_events","type":"User","site_admin":false},"created_at":"2016-06-07T15:49:50Z","updated_at":"2016-06-07T15:49:50Z","body":"> Still the question is which sge_option_XX is it that needs modifications?\r\n\r\nI don't know. Ask a sysadmin maybe? If you can't find a solution, then we'll change pypeflow to dump the ENV into the run script."}}
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