{"action":"created","comment":{"url":"https://api.github.com/repos/fidelram/deepTools/pulls/comments/64555991","id":64555991,"diff_hunk":"@@ -370,7 +377,18 @@ def main(args=None):\n     scores_file_list = args.scoreFileName\n     hm.computeMatrix(scores_file_list, args.regionsFileName, parameters, blackListFileName=args.blackListFileName, verbose=args.verbose, allArgs=args)\n     if args.sortRegions != 'no':\n-        hm.matrix.sort_groups(sort_using=args.sortUsing, sort_method=args.sortRegions)","path":"deeptools/computeMatrix.py","position":18,"original_position":18,"commit_id":"980cb6f088b6a6423d6fe691995fb43607e3f320","original_commit_id":"980cb6f088b6a6423d6fe691995fb43607e3f320","user":{"login":"fidelram","id":4964309,"avatar_url":"https://avatars.githubusercontent.com/u/4964309?v=3","gravatar_id":"","url":"https://api.github.com/users/fidelram","html_url":"https://github.com/fidelram","followers_url":"https://api.github.com/users/fidelram/followers","following_url":"https://api.github.com/users/fidelram/following{/other_user}","gists_url":"https://api.github.com/users/fidelram/gists{/gist_id}","starred_url":"https://api.github.com/users/fidelram/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fidelram/subscriptions","organizations_url":"https://api.github.com/users/fidelram/orgs","repos_url":"https://api.github.com/users/fidelram/repos","events_url":"https://api.github.com/users/fidelram/events{/privacy}","received_events_url":"https://api.github.com/users/fidelram/received_events","type":"User","site_admin":false},"body":"I think here is args.sortUsingSamples instead of args.sortUsing","created_at":"2016-05-25T11:26:27Z","updated_at":"2016-05-25T11:26:27Z","html_url":"https://github.com/fidelram/deepTools/pull/363#discussion_r64555991","pull_request_url":"https://api.github.com/repos/fidelram/deepTools/pulls/363","_links":{"self":{"href":"https://api.github.com/repos/fidelram/deepTools/pulls/comments/64555991"},"html":{"href":"https://github.com/fidelram/deepTools/pull/363#discussion_r64555991"},"pull_request":{"href":"https://api.github.com/repos/fidelram/deepTools/pulls/363"}}},"pull_request":{"url":"https://api.github.com/repos/fidelram/deepTools/pulls/363","id":71366115,"html_url":"https://github.com/fidelram/deepTools/pull/363","diff_url":"https://github.com/fidelram/deepTools/pull/363.diff","patch_url":"https://github.com/fidelram/deepTools/pull/363.patch","issue_url":"https://api.github.com/repos/fidelram/deepTools/issues/363","number":363,"state":"open","locked":false,"title":"add feature that allows to select a subset of samples used for sorting","user":{"login":"steffenheyne","id":10652658,"avatar_url":"https://avatars.githubusercontent.com/u/10652658?v=3","gravatar_id":"","url":"https://api.github.com/users/steffenheyne","html_url":"https://github.com/steffenheyne","followers_url":"https://api.github.com/users/steffenheyne/followers","following_url":"https://api.github.com/users/steffenheyne/following{/other_user}","gists_url":"https://api.github.com/users/steffenheyne/gists{/gist_id}","starred_url":"https://api.github.com/users/steffenheyne/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/steffenheyne/subscriptions","organizations_url":"https://api.github.com/users/steffenheyne/orgs","repos_url":"https://api.github.com/users/steffenheyne/repos","events_url":"https://api.github.com/users/steffenheyne/events{/privacy}","received_events_url":"https://api.github.com/users/steffenheyne/received_events","type":"User","site_admin":false},"body":"within each group, add option --sortUsingSamples, provided samples are numbered from 1, numbers are checked if they are in range of existing samples. 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