{"action":"created","issue":{"url":"https://api.github.com/repos/WormBase/website/issues/4958","repository_url":"https://api.github.com/repos/WormBase/website","labels_url":"https://api.github.com/repos/WormBase/website/issues/4958/labels{/name}","comments_url":"https://api.github.com/repos/WormBase/website/issues/4958/comments","events_url":"https://api.github.com/repos/WormBase/website/issues/4958/events","html_url":"https://github.com/WormBase/website/issues/4958","id":165876661,"number":4958,"title":"Hi,\nI wonder how to download all the alleles that ...","user":{"login":"wormbasehelp","id":3810208,"avatar_url":"https://avatars.githubusercontent.com/u/3810208?v=3","gravatar_id":"","url":"https://api.github.com/users/wormbasehelp","html_url":"https://github.com/wormbasehelp","followers_url":"https://api.github.com/users/wormbasehelp/followers","following_url":"https://api.github.com/users/wormbasehelp/following{/other_user}","gists_url":"https://api.github.com/users/wormbasehelp/gists{/gist_id}","starred_url":"https://api.github.com/users/wormbasehelp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wormbasehelp/subscriptions","organizations_url":"https://api.github.com/users/wormbasehelp/orgs","repos_url":"https://api.github.com/users/wormbasehelp/repos","events_url":"https://api.github.com/users/wormbasehelp/events{/privacy}","received_events_url":"https://api.github.com/users/wormbasehelp/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/WormBase/website/labels/HelpDesk","name":"HelpDesk","color":"DF7401"},{"url":"https://api.github.com/repos/WormBase/website/labels/source:%20offline%20chat","name":"source: offline chat","color":"ededed"}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-07-15T21:00:27Z","updated_at":"2016-07-15T23:18:02Z","closed_at":null,"body":"\n*Help Desk query collected when no chat operators were online. Follow up required.*\n\nHi,\nI wonder how to download all the alleles that are associated with phenotype for all genes in C. elegans?\n\n**Reported by:** Zhao**** (qzha***************)\n**Submitted from:** <a target=\"_blank\" href=\"http://www.wormbase.org/https://www.wormbase.org/species/c_elegans/gene/WBGene00006599#036g-c149-3\">https://www.wormbase.org/species/c_elegans/gene/WBGene00006599#036g-c149-3</a>\n**Browser:** Chrome 51.0.2704.103\n\n"},"comment":{"url":"https://api.github.com/repos/WormBase/website/issues/comments/233090808","html_url":"https://github.com/WormBase/website/issues/4958#issuecomment-233090808","issue_url":"https://api.github.com/repos/WormBase/website/issues/4958","id":233090808,"user":{"login":"raymond91125","id":619520,"avatar_url":"https://avatars.githubusercontent.com/u/619520?v=3","gravatar_id":"","url":"https://api.github.com/users/raymond91125","html_url":"https://github.com/raymond91125","followers_url":"https://api.github.com/users/raymond91125/followers","following_url":"https://api.github.com/users/raymond91125/following{/other_user}","gists_url":"https://api.github.com/users/raymond91125/gists{/gist_id}","starred_url":"https://api.github.com/users/raymond91125/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/raymond91125/subscriptions","organizations_url":"https://api.github.com/users/raymond91125/orgs","repos_url":"https://api.github.com/users/raymond91125/repos","events_url":"https://api.github.com/users/raymond91125/events{/privacy}","received_events_url":"https://api.github.com/users/raymond91125/received_events","type":"User","site_admin":false},"created_at":"2016-07-15T23:18:02Z","updated_at":"2016-07-15T23:18:02Z","body":"Hi Zhaozhao,\n\nI do not know of an easy way to get at the mutation types. But our \nvariation curator should get back to you with a more expert opinion.\n\nSorry.\n\nRaymond\n\n\n-- \n__\nRaymond Lee\nraymond@caltech.edu\nhttp://www.WormBase.org/\nCalifornia Institute of Technology\nDivision of Biology and Biological Engineering\nMail Code 156-29\nPasadena, CA 91125\nUSA\ntel: 626.395.2687\n\n\nOn 07/15/2016 03:17 PM, Qin Zhaozhao wrote:\n>\n> Hi Raymond,\n>\n> Thanks for the information. It is very helpful. But I still could not \n> find the mutation type, such as missense or nonsense mutations, from \n> the query? Could you help me with that?\n>\n> Best,\n>\n> Zhaozhao\n>\n> *From:*Raymond Lee [mailto:raymond@caltech.edu]\n> *Sent:* July 15, 2016 3:07 PM\n> *To:* Qin Zhaozhao <qzhaozhao@gmail.com>\n> *Cc:* WormBase/website \n> <reply@reply.github.com>; \n> help@wormbase.org\n> *Subject:* Re: [WormBase/website] Hi, I wonder how to download all the \n> alleles that ... (#4958)\n>\n> You can obtain a variation->phenotype list using Wormmine. Here's a \n> sample query in XML\n>\n>\n> <querymodel=\"genomic\"view=\"Allele.symbol \n> Allele.phenotypesObserved.identifier \n> Allele.phenotypesObserved.name\"sortOrder=\"Allele.symbol ASC\">\n> </query>\n>\n>\n> Thanks.\n>\n> Raymond\n>\n> On 07/15/2016 02:00 PM, WormBase Helpdesk wrote:\n>\n>     /Help Desk query collected when no chat operators were online.\n>     Follow up required./\n>\n>     Hi,\n>     I wonder how to download all the alleles that are associated with\n>     phenotype for all genes in C. elegans?\n>\n>     *Reported by:* Zhao**** (qzha************/*)*/*/\n>     /*//*Submitted from:**\n>     https://www.wormbase.org/species/c_elegans/gene/WBGene00006599#036g-c149-3\n>     *Browser:* Chrome 51.0.2704.103\n>\n>     —\n>     You are receiving this because you are subscribed to this thread.\n>     Reply to this email directly, view it on GitHub\n>     <https://github.com/WormBase/website/issues/4958>, or mute the\n>     thread\n>     <https://github.com/notifications/unsubscribe-auth/AAl0ALqWacQFMCiguWv7HMWdlzXGhcf2ks5qV_TsgaJpZM4JNx_K>.Image\n>     removed by sender.\n>\n> -- \n> -- \n> You received this message because you are subscribed to the \"WormBase: \n> help\" group.\n> To post to this group, send email to help@wormbase.org\n> To unsubscribe from this group, send email to\n> help+unsubscribe@wormbase.org\n> For more options, visit this group at\n> http://groups.google.com/a/wormbase.org/group/help?hl=en\n>\n> ---\n> You received this message because you are subscribed to the Google \n> Groups \"WormBase: help\" group.\n> To unsubscribe from this group and stop receiving emails from it, send \n> an email to help+unsubscribe@wormbase.org \n> <mailto:help+unsubscribe@wormbase.org>.\n\n"}}
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