{"action":"opened","issue":{"url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/127","repository_url":"https://api.github.com/repos/arq5x/lumpy-sv","labels_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/127/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/127/comments","events_url":"https://api.github.com/repos/arq5x/lumpy-sv/issues/127/events","html_url":"https://github.com/arq5x/lumpy-sv/issues/127","id":166872321,"number":127,"title":"Error with l_merge.py","user":{"login":"bharatij","id":16610492,"avatar_url":"https://avatars.githubusercontent.com/u/16610492?v=3","gravatar_id":"","url":"https://api.github.com/users/bharatij","html_url":"https://github.com/bharatij","followers_url":"https://api.github.com/users/bharatij/followers","following_url":"https://api.github.com/users/bharatij/following{/other_user}","gists_url":"https://api.github.com/users/bharatij/gists{/gist_id}","starred_url":"https://api.github.com/users/bharatij/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bharatij/subscriptions","organizations_url":"https://api.github.com/users/bharatij/orgs","repos_url":"https://api.github.com/users/bharatij/repos","events_url":"https://api.github.com/users/bharatij/events{/privacy}","received_events_url":"https://api.github.com/users/bharatij/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-07-21T17:17:40Z","updated_at":"2016-07-21T17:17:40Z","closed_at":null,"body":"Hi Ryan and Aaron,\r\nI have call SVs using lumpyexpress on each samples separately. I want to merged the lumpy calls , therefore, first I sorted all the vcfs into single vcf  usingl_sort.py. Then I used that vcf with l_merge.py with all default parameters as well as setting values for p, f and product. But I get the following error in any case. \r\nWould it be possible for you to point out what is causing this error?\r\n\r\nTraceback (most recent call last):\r\n  File \"./lumpy-sv/scripts/l_merge.py\", line 701, in <module>\r\n    sys.exit(main())\r\n  File \"./lumpy-sv/scripts/l_merge.py\", line 695, in main\r\n    use_product=opts.use_product)\r\n  File \"./l_merge.py\", line 611, in l_cluster\r\n    fixed_slop=fixed_slop)\r\n  File \"./lumpy-sv/scripts/l_bp.py\", line 188, in __init__\r\n    self.p_l = [float(x) for x in m['PRPOS'].split(',')]\r\nKeyError: 'PRPOS'\r\n\r\n\r\nThanks.\r\n"}}
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