{"action":"closed","issue":{"url":"https://api.github.com/repos/jltsiren/gcsa2/issues/20","repository_url":"https://api.github.com/repos/jltsiren/gcsa2","labels_url":"https://api.github.com/repos/jltsiren/gcsa2/issues/20/labels{/name}","comments_url":"https://api.github.com/repos/jltsiren/gcsa2/issues/20/comments","events_url":"https://api.github.com/repos/jltsiren/gcsa2/issues/20/events","html_url":"https://github.com/jltsiren/gcsa2/issues/20","id":145683829,"number":20,"title":"build results for k=11, 3 doubling steps","user":{"login":"ekg","id":145425,"avatar_url":"https://avatars.githubusercontent.com/u/145425?v=3","gravatar_id":"","url":"https://api.github.com/users/ekg","html_url":"https://github.com/ekg","followers_url":"https://api.github.com/users/ekg/followers","following_url":"https://api.github.com/users/ekg/following{/other_user}","gists_url":"https://api.github.com/users/ekg/gists{/gist_id}","starred_url":"https://api.github.com/users/ekg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ekg/subscriptions","organizations_url":"https://api.github.com/users/ekg/orgs","repos_url":"https://api.github.com/users/ekg/repos","events_url":"https://api.github.com/users/ekg/events{/privacy}","received_events_url":"https://api.github.com/users/ekg/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-04-04T13:28:48Z","updated_at":"2016-08-25T13:05:07Z","closed_at":"2016-08-25T13:05:07Z","body":"```\r\neg10@vr-4-1-14:~/graphs/1kgp+h37$ time build_gcsa-b433cc28 -D k11e3l32.work -l 750 -o wg.k88 $(for i in $(seq 1 22; echo X; echo Y); do echo -n \" k11e3l32/$i\"; done)                                             \r\nGCSA builder                                                                                             \r\n                                                                                                         \r\nInput:              k11e3l32/1.graph (binary format)                                                     \r\nInput:              k11e3l32/2.graph (binary format)                                                     \r\nInput:              k11e3l32/3.graph (binary format)                                                     \r\nInput:              k11e3l32/4.graph (binary format)                                                     \r\nInput:              k11e3l32/5.graph (binary format)                                                     \r\nInput:              k11e3l32/6.graph (binary format)                                                     \r\nInput:              k11e3l32/7.graph (binary format)                                                     \r\nInput:              k11e3l32/8.graph (binary format)                                                     \r\nInput:              k11e3l32/9.graph (binary format)                                                     \r\nInput:              k11e3l32/10.graph (binary format)                                                    \r\nInput:              k11e3l32/11.graph (binary format)                                                    \r\nInput:              k11e3l32/12.graph (binary format)                                                    \r\nInput:              k11e3l32/13.graph (binary format)                                                    \r\nInput:              k11e3l32/14.graph (binary format)                                                    \r\nInput:              k11e3l32/15.graph (binary format)                                                    \r\nInput:              k11e3l32/16.graph (binary format)                                                    \r\nInput:              k11e3l32/17.graph (binary format)                                                    \r\nInput:              k11e3l32/18.graph (binary format)                                                    \r\nInput:              k11e3l32/19.graph (binary format)                                                    \r\nInput:              k11e3l32/20.graph (binary format)                                                    \r\nInput:              k11e3l32/21.graph (binary format)                                                    \r\nInput:              k11e3l32/22.graph (binary format)                                                    \r\nInput:              k11e3l32/X.graph (binary format)                                                     \r\nInput:              k11e3l32/Y.graph (binary format)                                                     \r\nOutput:             wg.k88.gcsa, wg.k88.lcp                                                              \r\nDoubling steps:     3                                                                                    \r\nSize limit:         750 GB                                                                               \r\nBranching factor:   64                                                                                   \r\nThreads:            32                                                                                   \r\nTemp directory:     k11e3l32.work                                                                        \r\n                                                                                                         \r\nIndex built in 123545 seconds                                                                            \r\nMemory usage: 129.722 GB                                                                                 \r\nI/O volume: 6495.02 GB read, 5396.42 GB write                                                            \r\n                                                                                                         \r\nPaths:            12277185468                                                                            \r\nEdges:            12724670284                                                                            \r\nSamples:          2170004049 (at 1389202089 positions, 41 bits each)                                     \r\nMax query:        88                                                                                     \r\nIndex size:       25282.4 MB                                                                             \r\nWithout samples:  14676.4 MB                                                                             \r\nLCP size:         10407.5 MB                                                                             \r\n                                                                                                         \r\nFinal memory usage: 129.722 GB                                                                           \r\n                                                                                                         \r\n                                                                                                         \r\nreal    2078m0.570s                                                                                      \r\nuser    6524m29.209s                                                                                     \r\nsys     648m32.652s                                                                                      \r\n```\r\n\r\nThis seems to have worked, but I cannot load the indexes it generated. There is no clear error message from the vg side, so I'm curious how I should debug them using the tools in gcsa2.\r\n\r\nProbably I should have verified them in the build."}}
{"actor":{"display_login":"ekg"}}