{"action":"created","issue":{"url":"https://api.github.com/repos/joey711/shiny-phyloseq/issues/66","repository_url":"https://api.github.com/repos/joey711/shiny-phyloseq","labels_url":"https://api.github.com/repos/joey711/shiny-phyloseq/issues/66/labels{/name}","comments_url":"https://api.github.com/repos/joey711/shiny-phyloseq/issues/66/comments","events_url":"https://api.github.com/repos/joey711/shiny-phyloseq/issues/66/events","html_url":"https://github.com/joey711/shiny-phyloseq/issues/66","id":154340673,"number":66,"title":"shiny-phyloseq issues","user":{"login":"jaycodyk","id":19312823,"avatar_url":"https://avatars.githubusercontent.com/u/19312823?v=3","gravatar_id":"","url":"https://api.github.com/users/jaycodyk","html_url":"https://github.com/jaycodyk","followers_url":"https://api.github.com/users/jaycodyk/followers","following_url":"https://api.github.com/users/jaycodyk/following{/other_user}","gists_url":"https://api.github.com/users/jaycodyk/gists{/gist_id}","starred_url":"https://api.github.com/users/jaycodyk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jaycodyk/subscriptions","organizations_url":"https://api.github.com/users/jaycodyk/orgs","repos_url":"https://api.github.com/users/jaycodyk/repos","events_url":"https://api.github.com/users/jaycodyk/events{/privacy}","received_events_url":"https://api.github.com/users/jaycodyk/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":8,"created_at":"2016-05-11T20:54:23Z","updated_at":"2016-07-20T17:39:27Z","closed_at":"2016-05-16T16:32:42Z","body":"Hello,\r\nI have been able to use phyloseq-shiny with no issues until today. Earlier I tried to launch the package and got a message indicating that I needed to update R to the latest version. I updated to R version 3.3.0 and tried to launch shiny-phyloseq:\r\nshiny::runGitHub(\"shiny-phyloseq\",\"joey711\")\r\nAnd got the following:\r\nDownloading https://github.com/joey711/shiny-phyloseq/archive/master.tar.gz\r\nBioconductor version 3.3 (BiocInstaller 1.22.1), ?biocLite for help\r\nBioconductor version 3.3 (BiocInstaller 1.22.1), ?biocLite for help\r\nBioconductor version 3.3 (BiocInstaller 1.22.1), ?biocLite for help\r\nBioconductor version 3.3 (BiocInstaller 1.22.1), ?biocLite for help\r\nError in message(\"The following package is missing.\\n\", missingPackages,  : \r\n  object 'missingPackages' not found\r\n\r\nI tried to reinstall all required packages but I still get the message. \r\nAny help is much appreciated.\r\nThanks"},"comment":{"url":"https://api.github.com/repos/joey711/shiny-phyloseq/issues/comments/234023804","html_url":"https://github.com/joey711/shiny-phyloseq/issues/66#issuecomment-234023804","issue_url":"https://api.github.com/repos/joey711/shiny-phyloseq/issues/66","id":234023804,"user":{"login":"HSapers","id":20563445,"avatar_url":"https://avatars.githubusercontent.com/u/20563445?v=3","gravatar_id":"","url":"https://api.github.com/users/HSapers","html_url":"https://github.com/HSapers","followers_url":"https://api.github.com/users/HSapers/followers","following_url":"https://api.github.com/users/HSapers/following{/other_user}","gists_url":"https://api.github.com/users/HSapers/gists{/gist_id}","starred_url":"https://api.github.com/users/HSapers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/HSapers/subscriptions","organizations_url":"https://api.github.com/users/HSapers/orgs","repos_url":"https://api.github.com/users/HSapers/repos","events_url":"https://api.github.com/users/HSapers/events{/privacy}","received_events_url":"https://api.github.com/users/HSapers/received_events","type":"User","site_admin":false},"created_at":"2016-07-20T17:39:27Z","updated_at":"2016-07-20T17:39:27Z","body":"Hi,\r\nI'm rather new to using R, I had used shiny without issues, upon updating to the new version of R I seem to be having the same problem with being unable to install phyloseq. Any help would be appreciated - thanks!\r\n\r\n```\r\n> devtools::source_url(\"https://raw.githubusercontent.com/joey711/shiny-phyloseq/master/install.R\")\r\nSHA-1 hash of file is 5299b7e2db2851420210b5b1baf58a6ef8525e48\r\nBioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help\r\nThe following package is missing.\r\nphyloseq\r\nInstallation will be attempted...\r\nError in match(x, table, nomatch = 0L) : object 'i' not found\r\n> \r\n```"}}
{"actor":{"display_login":"HSapers"}}