{"action":"closed","issue":{"url":"https://api.github.com/repos/ghutchis/avogadro/issues/531","repository_url":"https://api.github.com/repos/ghutchis/avogadro","labels_url":"https://api.github.com/repos/ghutchis/avogadro/issues/531/labels{/name}","comments_url":"https://api.github.com/repos/ghutchis/avogadro/issues/531/comments","events_url":"https://api.github.com/repos/ghutchis/avogadro/issues/531/events","html_url":"https://github.com/ghutchis/avogadro/issues/531","id":150703613,"number":531,"title":"Adding Hydrogen makes avogadro crash","user":{"login":"ghutchis","id":41128,"avatar_url":"https://avatars.githubusercontent.com/u/41128?v=3","gravatar_id":"","url":"https://api.github.com/users/ghutchis","html_url":"https://github.com/ghutchis","followers_url":"https://api.github.com/users/ghutchis/followers","following_url":"https://api.github.com/users/ghutchis/following{/other_user}","gists_url":"https://api.github.com/users/ghutchis/gists{/gist_id}","starred_url":"https://api.github.com/users/ghutchis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ghutchis/subscriptions","organizations_url":"https://api.github.com/users/ghutchis/orgs","repos_url":"https://api.github.com/users/ghutchis/repos","events_url":"https://api.github.com/users/ghutchis/events{/privacy}","received_events_url":"https://api.github.com/users/ghutchis/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/ghutchis/avogadro/labels/auto-migrated","name":"auto-migrated","color":"ededed"},{"url":"https://api.github.com/repos/ghutchis/avogadro/labels/high%20priority","name":"high priority","color":"ededed"},{"url":"https://api.github.com/repos/ghutchis/avogadro/labels/Mouse%20Tools","name":"Mouse Tools","color":"ededed"},{"url":"https://api.github.com/repos/ghutchis/avogadro/labels/v_1.0.3","name":"v_1.0.3","color":"ededed"}],"state":"closed","locked":false,"assignee":{"login":"ghutchis","id":41128,"avatar_url":"https://avatars.githubusercontent.com/u/41128?v=3","gravatar_id":"","url":"https://api.github.com/users/ghutchis","html_url":"https://github.com/ghutchis","followers_url":"https://api.github.com/users/ghutchis/followers","following_url":"https://api.github.com/users/ghutchis/following{/other_user}","gists_url":"https://api.github.com/users/ghutchis/gists{/gist_id}","starred_url":"https://api.github.com/users/ghutchis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ghutchis/subscriptions","organizations_url":"https://api.github.com/users/ghutchis/orgs","repos_url":"https://api.github.com/users/ghutchis/repos","events_url":"https://api.github.com/users/ghutchis/events{/privacy}","received_events_url":"https://api.github.com/users/ghutchis/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2011-05-20T13:33:11Z","updated_at":"2016-04-25T19:33:54Z","closed_at":"2016-04-25T19:33:54Z","body":"I have seen bug#3176302 related with this but i wasnt able to comment under it, so i had to issue a new one.\r\n\r\nToday built avogadro-1.0.3 with following options:\r\n\r\n-DENABLE_THREADGL=FALSE\r\n-DENABLE_RPATH=OFF\r\n-DENABLE_UPDATE_CHECKER=OFF\r\n\r\nUsing KDE-SC-4.6.2, Qt-4.7.2 and kernel-2.6.37.6. When i try to connect any atom to any Hydrogen with \"Adjust Hydrogens\" enabled, avogadro crashes with a segfault.  Here is the exact console output:\r\n\r\n\r\n[metin@ofis-2011 ~/repos/2011/devel/science/chemistry/avogadro]> avogadro \r\n\"Avogadro version:      1.0.3   Git:\r\nLibAvogadro version:    1.0.3   Git:    \" \r\nLocale:  \"tr_TR\" \r\nTranslation successfully loaded. \r\n\"Sistem OpenGl'ye sahip.\" \r\n\"OpenGL kabiliyetleri test edilecek.\" \r\n\"OpenGL yetenekleri bulundu: \" \r\n         \"Çift Tamponlama.\" \r\n         \"Direct Render.\" \r\n         \"Antialias.\" \r\nLoading plugins: \"/usr/bin/../lib/avogadro/1_0\" \r\nSearching for plugins in \"/usr/lib/avogadro/1_0/colors\" \r\nSearching for plugins in \"/usr/lib/avogadro/1_0/engines\" \r\nSearching for plugins in \"/usr/lib/avogadro/1_0/extensions\" \r\nSearching for plugins in \"/usr/lib/avogadro/1_0/tools\" \r\nSearching for plugins in \"\" \r\nLoading plugins: \"/home/metin/.avogadro/1_0/plugins\" \r\nSearching for plugins in \"\" \r\nSearching for plugins in \"\" \r\nSearching for plugins in \"\" \r\nSearching for plugins in \"\" \r\nSearching for plugins in \"\" \r\nQStackedLayout::setCurrentWidget: Widget 0x23a2db0 not contained in stack\r\nGLWidget initialisation... \r\nGLWidget initialised... \r\ncreateObjects() \r\nlibpng warning: Ignoring attempt to set cHRM RGB triangle with zero area\r\nQt has caught an exception thrown from an event handler. Throwing\r\nexceptions from an event handler is not supported in Qt. You must\r\nreimplement QApplication::notify() and catch all exceptions there.\r\n\r\nterminate called after throwing an instance of 'std::bad_alloc'\r\n  what():  std::bad_alloc\r\n\r\n\r\nRegards.\n\nReported by: makdere"}}