{"action":"created","issue":{"url":"https://api.github.com/repos/marbl/canu/issues/36","labels_url":"https://api.github.com/repos/marbl/canu/issues/36/labels{/name}","comments_url":"https://api.github.com/repos/marbl/canu/issues/36/comments","events_url":"https://api.github.com/repos/marbl/canu/issues/36/events","html_url":"https://github.com/marbl/canu/issues/36","id":129802866,"number":36,"title":"CorrectReads.pm error","user":{"login":"suryasaha","id":1084749,"avatar_url":"https://avatars.githubusercontent.com/u/1084749?v=3","gravatar_id":"","url":"https://api.github.com/users/suryasaha","html_url":"https://github.com/suryasaha","followers_url":"https://api.github.com/users/suryasaha/followers","following_url":"https://api.github.com/users/suryasaha/following{/other_user}","gists_url":"https://api.github.com/users/suryasaha/gists{/gist_id}","starred_url":"https://api.github.com/users/suryasaha/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/suryasaha/subscriptions","organizations_url":"https://api.github.com/users/suryasaha/orgs","repos_url":"https://api.github.com/users/suryasaha/repos","events_url":"https://api.github.com/users/suryasaha/events{/privacy}","received_events_url":"https://api.github.com/users/suryasaha/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/marbl/canu/labels/bug","name":"bug","color":"fc2929"}],"state":"open","locked":false,"assignee":{"login":"brianwalenz","id":8249720,"avatar_url":"https://avatars.githubusercontent.com/u/8249720?v=3","gravatar_id":"","url":"https://api.github.com/users/brianwalenz","html_url":"https://github.com/brianwalenz","followers_url":"https://api.github.com/users/brianwalenz/followers","following_url":"https://api.github.com/users/brianwalenz/following{/other_user}","gists_url":"https://api.github.com/users/brianwalenz/gists{/gist_id}","starred_url":"https://api.github.com/users/brianwalenz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brianwalenz/subscriptions","organizations_url":"https://api.github.com/users/brianwalenz/orgs","repos_url":"https://api.github.com/users/brianwalenz/repos","events_url":"https://api.github.com/users/brianwalenz/events{/privacy}","received_events_url":"https://api.github.com/users/brianwalenz/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2016-01-29T15:42:33Z","updated_at":"2016-01-29T16:14:50Z","closed_at":null,"body":"Hi!\r\n\r\nI am getting an error from CANU for a 1.9gb fastq pacbio bacterial dataset. It is running on a Ubuntu system\r\n`Linux thompson.sgn.cornell.edu 3.19.0-43-generic #49~14.04.1-Ubuntu SMP Thu Dec 31 15:44:49 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux`\r\n\r\nCANU command:\r\n`~/tools/canu/Linux-amd64/bin/canu -p PS_14 -d PS_14-def genomeSize=6.5m -useGrid=0 -maxThreads=30 -maxMemory=500  -pacbio-raw Pseudomonas_14_BP_P6_010516_MB_170pM/all.fastq`\r\n\r\nError:\r\n`Modification of non-creatable array value attempted, subscript -453 at /data/home/surya/tools/canu/Linux-amd64/bin/lib/canu/CorrectReads.pm line 980, <L> line 4.`\r\n\r\nI have attached the log files to help track it down. Please let me know if you need anything else from me. Thanks much!\r\n\r\n-Surya\r\n\r\n[canu-logs.zip](https://github.com/marbl/canu/files/109953/canu-logs.zip)"},"comment":{"url":"https://api.github.com/repos/marbl/canu/issues/comments/176841260","html_url":"https://github.com/marbl/canu/issues/36#issuecomment-176841260","issue_url":"https://api.github.com/repos/marbl/canu/issues/36","id":176841260,"user":{"login":"brianwalenz","id":8249720,"avatar_url":"https://avatars.githubusercontent.com/u/8249720?v=3","gravatar_id":"","url":"https://api.github.com/users/brianwalenz","html_url":"https://github.com/brianwalenz","followers_url":"https://api.github.com/users/brianwalenz/followers","following_url":"https://api.github.com/users/brianwalenz/following{/other_user}","gists_url":"https://api.github.com/users/brianwalenz/gists{/gist_id}","starred_url":"https://api.github.com/users/brianwalenz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brianwalenz/subscriptions","organizations_url":"https://api.github.com/users/brianwalenz/orgs","repos_url":"https://api.github.com/users/brianwalenz/repos","events_url":"https://api.github.com/users/brianwalenz/events{/privacy}","received_events_url":"https://api.github.com/users/brianwalenz/received_events","type":"User","site_admin":false},"created_at":"2016-01-29T16:14:49Z","updated_at":"2016-01-29T16:14:49Z","body":"A 'feature' of perl must have been masking that particular error in our tests.\r\n\r\nCommenting out the three @*DiffLengthHist arrays (one block of three at line 903, another block at line 979) will resolve the issue.  These must have been left over from development; they're never used.\r\n\r\nIn commit 6df89c83b8024b7a26879d882f51676b3fe5ff65."}}