{"action":"created","issue":{"url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25","repository_url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-","labels_url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25/labels{/name}","comments_url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25/comments","events_url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25/events","html_url":"https://github.com/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25","id":166596341,"number":25,"title":"FMD : libblas module issue","user":{"login":"bazinski","id":5602885,"avatar_url":"https://avatars.githubusercontent.com/u/5602885?v=3","gravatar_id":"","url":"https://api.github.com/users/bazinski","html_url":"https://github.com/bazinski","followers_url":"https://api.github.com/users/bazinski/followers","following_url":"https://api.github.com/users/bazinski/following{/other_user}","gists_url":"https://api.github.com/users/bazinski/gists{/gist_id}","starred_url":"https://api.github.com/users/bazinski/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bazinski/subscriptions","organizations_url":"https://api.github.com/users/bazinski/orgs","repos_url":"https://api.github.com/users/bazinski/repos","events_url":"https://api.github.com/users/bazinski/events{/privacy}","received_events_url":"https://api.github.com/users/bazinski/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/labels/bug","name":"bug","color":"ee0701"},{"url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/labels/identified.","name":"identified.","color":"ededed"}],"state":"closed","locked":false,"assignee":{"login":"brucellino","id":2115428,"avatar_url":"https://avatars.githubusercontent.com/u/2115428?v=3","gravatar_id":"","url":"https://api.github.com/users/brucellino","html_url":"https://github.com/brucellino","followers_url":"https://api.github.com/users/brucellino/followers","following_url":"https://api.github.com/users/brucellino/following{/other_user}","gists_url":"https://api.github.com/users/brucellino/gists{/gist_id}","starred_url":"https://api.github.com/users/brucellino/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brucellino/subscriptions","organizations_url":"https://api.github.com/users/brucellino/orgs","repos_url":"https://api.github.com/users/brucellino/repos","events_url":"https://api.github.com/users/brucellino/events{/privacy}","received_events_url":"https://api.github.com/users/brucellino/received_events","type":"User","site_admin":false},"assignees":[{"login":"brucellino","id":2115428,"avatar_url":"https://avatars.githubusercontent.com/u/2115428?v=3","gravatar_id":"","url":"https://api.github.com/users/brucellino","html_url":"https://github.com/brucellino","followers_url":"https://api.github.com/users/brucellino/followers","following_url":"https://api.github.com/users/brucellino/following{/other_user}","gists_url":"https://api.github.com/users/brucellino/gists{/gist_id}","starred_url":"https://api.github.com/users/brucellino/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brucellino/subscriptions","organizations_url":"https://api.github.com/users/brucellino/orgs","repos_url":"https://api.github.com/users/brucellino/repos","events_url":"https://api.github.com/users/brucellino/events{/privacy}","received_events_url":"https://api.github.com/users/brucellino/received_events","type":"User","site_admin":false}],"milestone":null,"comments":8,"created_at":"2016-07-20T14:32:47Z","updated_at":"2016-07-20T14:58:16Z","closed_at":"2016-07-20T14:58:16Z","body":"running an arbitrarly chosen binary of fmd.\r\n\r\ngnode-2-20:~ $ /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/FMD/0.1/bin/recalcenergy\r\n\r\n/cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/FMD/0.1/bin/recalcenergy: error while loading shared libraries: libblas.so.3: cannot open shared object file: No such file or directory"},"comment":{"url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/comments/233975599","html_url":"https://github.com/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25#issuecomment-233975599","issue_url":"https://api.github.com/repos/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/issues/25","id":233975599,"user":{"login":"bazinski","id":5602885,"avatar_url":"https://avatars.githubusercontent.com/u/5602885?v=3","gravatar_id":"","url":"https://api.github.com/users/bazinski","html_url":"https://github.com/bazinski","followers_url":"https://api.github.com/users/bazinski/followers","following_url":"https://api.github.com/users/bazinski/following{/other_user}","gists_url":"https://api.github.com/users/bazinski/gists{/gist_id}","starred_url":"https://api.github.com/users/bazinski/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bazinski/subscriptions","organizations_url":"https://api.github.com/users/bazinski/orgs","repos_url":"https://api.github.com/users/bazinski/repos","events_url":"https://api.github.com/users/bazinski/events{/privacy}","received_events_url":"https://api.github.com/users/bazinski/received_events","type":"User","site_admin":false},"created_at":"2016-07-20T14:58:16Z","updated_at":"2016-07-20T14:58:16Z","body":"sorted it was an issue with libraries and lapack,\r\nShot Bruce for the bash-setup.sh in cvmfs/fastrepo.sagrid.ac.za/\r\n\r\nmodule add FMD/0.1\r\nroot@gnode-2-20:/ $ module list\r\nCurrently Loaded Modulefiles:\r\n  1) ncurses/5.9               3) mpfr/3.1.2                5) gcc/5.1.0                 7) openmpi/1.8.8-gcc-5.1.0   9) FMD/0.1\r\n  2) gmp/6.1.0                 4) mpc/1.0.1                 6) torque/2.5.13-gcc-5.1.0   8) lapack/3.6.0-gcc-5.1.0\r\nroot@gnode-2-20:/ $ ldd /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/FMD/0.1/bin/recalcenergy\r\n\tlinux-vdso.so.1 =>  (0x00007ffe86ee5000)\r\n\tliblapack.so.3 => /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/lapack/3.6.0-gcc-5.1.0/lib64/liblapack.so.3 (0x00007efef4b0d000)\r\n\tlibblas.so.3 => /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/lapack/3.6.0-gcc-5.1.0/lib64/libblas.so.3 (0x00007efef488e000)\r\n\tlibgfortran.so.3 => /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/gcc/5.1.0/lib64/libgfortran.so.3 (0x00007efef456d000)\r\n\tlibm.so.6 => /lib64/libm.so.6 (0x000000379a200000)\r\n\tlibz.so.1 => /lib64/libz.so.1 (0x000000379aa00000)\r\n\tlibc.so.6 => /lib64/libc.so.6 (0x0000003799600000)\r\n\tlibgcc_s.so.1 => /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/gcc/5.1.0/lib64/libgcc_s.so.1 (0x00007efef4344000)\r\n\tlibquadmath.so.0 => /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/gcc/5.1.0/lib64/libquadmath.so.0 (0x00007efef4106000)\r\n\t/lib64/ld-linux-x86-64.so.2 (0x0000003799200000)\r\nroot@gnode-2-20:/ $ /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/FMD/0.1/bin/recalcenergy\r\n\r\nusage: /cvmfs/fastrepo.sagrid.ac.za/generic/sl6/x86_64/FMD/0.1/bin/recalcenergy interaction parafile\r\n\r\n   -o              overwrite parameter file\r\n\r\n"}}
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