{"action":"created","comment":{"url":"https://api.github.com/repos/TGAC/tgac-galaxytools/pulls/comments/61114279","id":61114279,"diff_hunk":"@@ -0,0 +1,233 @@\n+<%\n+    default_title = \"Aequatus of\"\n+\n+    # Use root for resource loading.\n+    root = h.url_for( '/' )\n+    history_id = trans.security.encode_id( trans.history.id )\n+    app_root    = root + \"plugins/visualizations/aequatus/static/\"\n+%>\n+## ----------------------------------------------------------------------------\n+\n+<!DOCTYPE HTML>\n+<html>\n+<head>\n+<meta http-equiv=\"Content-Type\" content=\"text/html; charset=utf-8\" />\n+<title> ${visualization_name}</title>\n+\n+## install shared libraries\n+        ${h.js( 'libs/jquery/jquery',\n+                'libs/jquery/jquery.migrate',\n+                'libs/jquery/jquery-ui',\n+                'libs/bootstrap',\n+                'libs/d3')}\n+\n+## aequatus-vis\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/init.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/geneView.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/drawGene.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/drawGeneExonOnly.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/drawCIGARs.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/util.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/d3_tree.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/newick.js\" )}\n+\n+\n+## aequatus plugin script\n+        ${h.javascript_link( app_root + \"controls.js\" )}\n+        ${h.javascript_link( app_root + \"popup.js\" )}\n+\n+\n+## external scripts\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/scriptaculous/prototype.js\" )}\n+        ${h.javascript_link( app_root + \"aequatus-vis/scripts/jquery/js/jquery.svg.js\" )}\n+\n+\n+## external css\n+        ${h.stylesheet_link( app_root + \"aequatus-vis/scripts/jquery/jquery.svg.css\" )}\n+        ${h.stylesheet_link( app_root + \"aequatus-vis/styles/font-awesome-4.2.0/css/font-awesome.css\" )}\n+        ${h.stylesheet_link( app_root + \"aequatus-vis/styles/style.css\" )}\n+\n+## aequatus css\n+        ${h.stylesheet_link( app_root + \"aequatus.css\" )}\n+       \n+</head>\n+\n+## ----------------------------------------------------------------------------\n+<body style=\"cursor: auto; height: 100%; position: absolute; width: 100%; z-index: 1999;\">\n+\n+<script>\n+\n+        console.log(\"here\")","path":"visualisation/aequatus/templates/aequatus.mako","position":60,"original_position":60,"commit_id":"13d9ae8ff648184be6e03763e55f8c336e42e9d6","original_commit_id":"13d9ae8ff648184be6e03763e55f8c336e42e9d6","user":{"login":"nsoranzo","id":4924623,"avatar_url":"https://avatars.githubusercontent.com/u/4924623?v=3","gravatar_id":"","url":"https://api.github.com/users/nsoranzo","html_url":"https://github.com/nsoranzo","followers_url":"https://api.github.com/users/nsoranzo/followers","following_url":"https://api.github.com/users/nsoranzo/following{/other_user}","gists_url":"https://api.github.com/users/nsoranzo/gists{/gist_id}","starred_url":"https://api.github.com/users/nsoranzo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nsoranzo/subscriptions","organizations_url":"https://api.github.com/users/nsoranzo/orgs","repos_url":"https://api.github.com/users/nsoranzo/repos","events_url":"https://api.github.com/users/nsoranzo/events{/privacy}","received_events_url":"https://api.github.com/users/nsoranzo/received_events","type":"User","site_admin":false},"body":"Debugging? Can be removed, I guess.","created_at":"2016-04-26T16:06:07Z","updated_at":"2016-04-26T16:06:07Z","html_url":"https://github.com/TGAC/tgac-galaxytools/pull/15#discussion_r61114279","pull_request_url":"https://api.github.com/repos/TGAC/tgac-galaxytools/pulls/15","_links":{"self":{"href":"https://api.github.com/repos/TGAC/tgac-galaxytools/pulls/comments/61114279"},"html":{"href":"https://github.com/TGAC/tgac-galaxytools/pull/15#discussion_r61114279"},"pull_request":{"href":"https://api.github.com/repos/TGAC/tgac-galaxytools/pulls/15"}}},"pull_request":{"url":"https://api.github.com/repos/TGAC/tgac-galaxytools/pulls/15","id":50153710,"html_url":"https://github.com/TGAC/tgac-galaxytools/pull/15","diff_url":"https://github.com/TGAC/tgac-galaxytools/pull/15.diff","patch_url":"https://github.com/TGAC/tgac-galaxytools/pull/15.patch","issue_url":"https://api.github.com/repos/TGAC/tgac-galaxytools/issues/15","number":15,"state":"open","locked":false,"title":"Aequatus vis plugin for 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