{"action":"created","issue":{"url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/132","repository_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment","labels_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/132/labels{/name}","comments_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/132/comments","events_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/132/events","html_url":"https://github.com/vjcitn/MultiAssayExperiment/issues/132","id":158523696,"number":132,"title":"severe missingness in ovarian pData?","user":{"login":"vjcitn","id":4624066,"avatar_url":"https://avatars.githubusercontent.com/u/4624066?v=3","gravatar_id":"","url":"https://api.github.com/users/vjcitn","html_url":"https://github.com/vjcitn","followers_url":"https://api.github.com/users/vjcitn/followers","following_url":"https://api.github.com/users/vjcitn/following{/other_user}","gists_url":"https://api.github.com/users/vjcitn/gists{/gist_id}","starred_url":"https://api.github.com/users/vjcitn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vjcitn/subscriptions","organizations_url":"https://api.github.com/users/vjcitn/orgs","repos_url":"https://api.github.com/users/vjcitn/repos","events_url":"https://api.github.com/users/vjcitn/events{/privacy}","received_events_url":"https://api.github.com/users/vjcitn/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-06-04T20:57:33Z","updated_at":"2016-06-05T01:03:31Z","closed_at":null,"body":"ov is the readRDS of what we have in the S3 bucket\r\n\r\n> table(pData(ov)$radiation_therapy, exclude=NULL)\r\n\r\n  no  yes <NA> \r\n 557    5   29 \r\n> table(pData(ov)$chemo_therapy)\r\n< table of extent 0 >\r\n> table(pData(ov)$tumor_stage)\r\n< table of extent 0 >"},"comment":{"url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/comments/223786984","html_url":"https://github.com/vjcitn/MultiAssayExperiment/issues/132#issuecomment-223786984","issue_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/132","id":223786984,"user":{"login":"lwaldron","id":639942,"avatar_url":"https://avatars.githubusercontent.com/u/639942?v=3","gravatar_id":"","url":"https://api.github.com/users/lwaldron","html_url":"https://github.com/lwaldron","followers_url":"https://api.github.com/users/lwaldron/followers","following_url":"https://api.github.com/users/lwaldron/following{/other_user}","gists_url":"https://api.github.com/users/lwaldron/gists{/gist_id}","starred_url":"https://api.github.com/users/lwaldron/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lwaldron/subscriptions","organizations_url":"https://api.github.com/users/lwaldron/orgs","repos_url":"https://api.github.com/users/lwaldron/repos","events_url":"https://api.github.com/users/lwaldron/events{/privacy}","received_events_url":"https://api.github.com/users/lwaldron/received_events","type":"User","site_admin":false},"created_at":"2016-06-05T01:03:31Z","updated_at":"2016-06-05T01:03:31Z","body":"I mean, it's not done yet in the MAE for any cancers, but for about 20 cancers we have a merged version of the clinical data prepared already.  By the way, cBioPortal provides only a few clinical variables which are quite an incomplete selection, although that may have some advantage over providing hundreds of variables..."}}
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