{"action":"closed","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1305","repository_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1305/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1305/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1305/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1305","id":145710790,"number":1305,"title":"Order of Tumor and Normal Sample change in vcf from different caller","user":{"login":"apastore","id":6528310,"avatar_url":"https://avatars.githubusercontent.com/u/6528310?v=3","gravatar_id":"","url":"https://api.github.com/users/apastore","html_url":"https://github.com/apastore","followers_url":"https://api.github.com/users/apastore/followers","following_url":"https://api.github.com/users/apastore/following{/other_user}","gists_url":"https://api.github.com/users/apastore/gists{/gist_id}","starred_url":"https://api.github.com/users/apastore/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/apastore/subscriptions","organizations_url":"https://api.github.com/users/apastore/orgs","repos_url":"https://api.github.com/users/apastore/repos","events_url":"https://api.github.com/users/apastore/events{/privacy}","received_events_url":"https://api.github.com/users/apastore/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-04-04T15:02:19Z","updated_at":"2016-04-04T15:56:51Z","closed_at":"2016-04-04T15:56:51Z","body":"Hi Brad, \r\nThis is probably non a major Issues but, I have noticed for pair Tumor/Normal pair some caller first place the Normal and other Place the Tumor sample in the vcf.\r\n\r\nFreebayes, Mutect2, vardict have Tumor sample at first position.\r\nGATK-HC, mutest, varscan have Normal sample as position.\r\nensemble is inconsistent depending on samples. \r\n\r\nThanks!\r\nAlessandro "}}