{"action":"created","issue":{"url":"https://api.github.com/repos/scitran/utilities/issues/2","repository_url":"https://api.github.com/repos/scitran/utilities","labels_url":"https://api.github.com/repos/scitran/utilities/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/scitran/utilities/issues/2/comments","events_url":"https://api.github.com/repos/scitran/utilities/issues/2/events","html_url":"https://github.com/scitran/utilities/pull/2","id":188669170,"number":2,"title":"Nested file detection","user":{"login":"cgc","id":1276728,"avatar_url":"https://avatars.githubusercontent.com/u/1276728?v=3","gravatar_id":"","url":"https://api.github.com/users/cgc","html_url":"https://github.com/cgc","followers_url":"https://api.github.com/users/cgc/followers","following_url":"https://api.github.com/users/cgc/following{/other_user}","gists_url":"https://api.github.com/users/cgc/gists{/gist_id}","starred_url":"https://api.github.com/users/cgc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cgc/subscriptions","organizations_url":"https://api.github.com/users/cgc/orgs","repos_url":"https://api.github.com/users/cgc/repos","events_url":"https://api.github.com/users/cgc/events{/privacy}","received_events_url":"https://api.github.com/users/cgc/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-11-11T02:16:01Z","updated_at":"2016-11-11T20:28:13Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/scitran/utilities/pulls/2","html_url":"https://github.com/scitran/utilities/pull/2","diff_url":"https://github.com/scitran/utilities/pull/2.diff","patch_url":"https://github.com/scitran/utilities/pull/2.patch"},"body":"When merging this, can you also enable travis CI support for the repo as well? https://travis-ci.org/scitran/utilities"},"comment":{"url":"https://api.github.com/repos/scitran/utilities/issues/comments/260048267","html_url":"https://github.com/scitran/utilities/pull/2#issuecomment-260048267","issue_url":"https://api.github.com/repos/scitran/utilities/issues/2","id":260048267,"user":{"login":"cgc","id":1276728,"avatar_url":"https://avatars.githubusercontent.com/u/1276728?v=3","gravatar_id":"","url":"https://api.github.com/users/cgc","html_url":"https://github.com/cgc","followers_url":"https://api.github.com/users/cgc/followers","following_url":"https://api.github.com/users/cgc/following{/other_user}","gists_url":"https://api.github.com/users/cgc/gists{/gist_id}","starred_url":"https://api.github.com/users/cgc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cgc/subscriptions","organizations_url":"https://api.github.com/users/cgc/orgs","repos_url":"https://api.github.com/users/cgc/repos","events_url":"https://api.github.com/users/cgc/events{/privacy}","received_events_url":"https://api.github.com/users/cgc/received_events","type":"User","site_admin":false},"created_at":"2016-11-11T20:28:13Z","updated_at":"2016-11-11T20:28:13Z","body":"I don't think this supports nested files in output. My latest change to [realign-unwarp](https://github.com/scitran-apps/realign-unwarp/commit/bd40f9653dc979786348e9ad52d11eadcd9ece05) doesn't seem to fix things in my test instance. poking around in mongo, the analysis on the session also don't have the outputs.\r\n\r\nTaking a step back, I'm trying to get files in folders in the output directory into the analysis output. So if my output directory has `logs/file.log`,  I want that to (short-term) show up in the API and (long-term) show up in the UI.\r\n\r\ncc @ryansanford"}}
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