{"action":"closed","issue":{"url":"https://api.github.com/repos/compomics/searchgui/issues/81","labels_url":"https://api.github.com/repos/compomics/searchgui/issues/81/labels{/name}","comments_url":"https://api.github.com/repos/compomics/searchgui/issues/81/comments","events_url":"https://api.github.com/repos/compomics/searchgui/issues/81/events","html_url":"https://github.com/compomics/searchgui/issues/81","id":128702671,"number":81,"title":"X!Tandem parameter file: lysargiNase cleavage site definition","user":{"login":"ulriche","id":13509447,"avatar_url":"https://avatars.githubusercontent.com/u/13509447?v=3","gravatar_id":"","url":"https://api.github.com/users/ulriche","html_url":"https://github.com/ulriche","followers_url":"https://api.github.com/users/ulriche/followers","following_url":"https://api.github.com/users/ulriche/following{/other_user}","gists_url":"https://api.github.com/users/ulriche/gists{/gist_id}","starred_url":"https://api.github.com/users/ulriche/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ulriche/subscriptions","organizations_url":"https://api.github.com/users/ulriche/orgs","repos_url":"https://api.github.com/users/ulriche/repos","events_url":"https://api.github.com/users/ulriche/events{/privacy}","received_events_url":"https://api.github.com/users/ulriche/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/compomics/searchgui/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":{"login":"hbarsnes","id":13151214,"avatar_url":"https://avatars.githubusercontent.com/u/13151214?v=3","gravatar_id":"","url":"https://api.github.com/users/hbarsnes","html_url":"https://github.com/hbarsnes","followers_url":"https://api.github.com/users/hbarsnes/followers","following_url":"https://api.github.com/users/hbarsnes/following{/other_user}","gists_url":"https://api.github.com/users/hbarsnes/gists{/gist_id}","starred_url":"https://api.github.com/users/hbarsnes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbarsnes/subscriptions","organizations_url":"https://api.github.com/users/hbarsnes/orgs","repos_url":"https://api.github.com/users/hbarsnes/repos","events_url":"https://api.github.com/users/hbarsnes/events{/privacy}","received_events_url":"https://api.github.com/users/hbarsnes/received_events","type":"User","site_admin":false},"milestone":null,"comments":3,"created_at":"2016-01-26T02:22:54Z","updated_at":"2016-01-26T20:08:50Z","closed_at":"2016-01-26T20:08:50Z","body":"Hey guys,\r\n\r\nnot fully sure if it is really a problem or not, but I noticed that when using lysargiNase in X! Tandem, the  \"cleavage site\" definition in the parameter file looks like that:\r\n***\\<note type=\"input\" label=\"protein, cleavage site\">|[RK]\\</note>***\r\n\r\nis the [X] before the pipe not needed to indicate cleavage after any residue? the thing is that my X! Tandem results are very poor (also compared to Comet), thus I am trying right now to figure out what is going wrong.\r\n\r\nhope you can help\r\nu\r\n\r\n\r\n"}}