{"action":"opened","issue":{"url":"https://api.github.com/repos/merenlab/anvio/issues/438","repository_url":"https://api.github.com/repos/merenlab/anvio","labels_url":"https://api.github.com/repos/merenlab/anvio/issues/438/labels{/name}","comments_url":"https://api.github.com/repos/merenlab/anvio/issues/438/comments","events_url":"https://api.github.com/repos/merenlab/anvio/issues/438/events","html_url":"https://github.com/merenlab/anvio/issues/438","id":198066703,"number":438,"title":"blastp missing from new docker 2.1.0 image","user":{"login":"kastman","id":44843,"avatar_url":"https://avatars.githubusercontent.com/u/44843?v=3","gravatar_id":"","url":"https://api.github.com/users/kastman","html_url":"https://github.com/kastman","followers_url":"https://api.github.com/users/kastman/followers","following_url":"https://api.github.com/users/kastman/following{/other_user}","gists_url":"https://api.github.com/users/kastman/gists{/gist_id}","starred_url":"https://api.github.com/users/kastman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kastman/subscriptions","organizations_url":"https://api.github.com/users/kastman/orgs","repos_url":"https://api.github.com/users/kastman/repos","events_url":"https://api.github.com/users/kastman/events{/privacy}","received_events_url":"https://api.github.com/users/kastman/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-12-29T20:50:33Z","updated_at":"2016-12-29T20:50:33Z","closed_at":null,"body":"Hi all,\r\n\r\nThanks for putting up the new docker images. However, it looks like blastp isn't being distributed in the latest version:\r\n\r\n    $ docker run -p 8080:8080 -it meren/anvio:2.1.0\r\n     :: anvi'o ::  / >>> anvi-self-test\r\n\r\n> :: Reformat the contigs FASTA ...\r\n> \r\n> Input ........................................: sandbox/contigs.fa\r\n> Output .......................................: /tmp/tmpM7s3Nq/test-output/contigs.fa\r\n> Minimum length ...............................: 0\r\n> Total num contigs ............................: 6\r\n> Total num nucleotides ........................: 57,030\r\n> Contigs removed ..............................: 0 (0.00% of all)\r\n> Nucleotides removed ..........................: 0 (0.00% of all)\r\n> Deflines simplified ..........................: True\r\n> \r\n> ./run_all_tests.sh: line 19: column: command not found\r\n> \r\n> ...More tests, then at the end:\r\n> \r\n> Config Error: An anvi'o function needs 'blastp' to be installed on your system, but it doesn't\r\n>              seem to appear in your path\r\n\r\nHowever, I wonder if this is just indicative of a new test added in 2.1.0; for example the error doesn't appear in 2.0.2 but I also don't see the \"Reformat the contigs FASTA ...\" section.\r\n\r\nSince this is just a local image I suppose it's pretty straightforward to install the blastp depedency (or the diamond blastp?) but since Docker is supposed to be distributable and idempotent I just thought I'd point it out. Thanks for the great work,\r\n\r\nErik"}}
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