{"action":"created","issue":{"url":"https://api.github.com/repos/BIC-MNI/bic-pipelines/issues/3","repository_url":"https://api.github.com/repos/BIC-MNI/bic-pipelines","labels_url":"https://api.github.com/repos/BIC-MNI/bic-pipelines/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/BIC-MNI/bic-pipelines/issues/3/comments","events_url":"https://api.github.com/repos/BIC-MNI/bic-pipelines/issues/3/events","html_url":"https://github.com/BIC-MNI/bic-pipelines/issues/3","id":157257671,"number":3,"title":"Low resolution","user":{"login":"poquirion","id":11478663,"avatar_url":"https://avatars.githubusercontent.com/u/11478663?v=3","gravatar_id":"","url":"https://api.github.com/users/poquirion","html_url":"https://github.com/poquirion","followers_url":"https://api.github.com/users/poquirion/followers","following_url":"https://api.github.com/users/poquirion/following{/other_user}","gists_url":"https://api.github.com/users/poquirion/gists{/gist_id}","starred_url":"https://api.github.com/users/poquirion/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/poquirion/subscriptions","organizations_url":"https://api.github.com/users/poquirion/orgs","repos_url":"https://api.github.com/users/poquirion/repos","events_url":"https://api.github.com/users/poquirion/events{/privacy}","received_events_url":"https://api.github.com/users/poquirion/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2016-05-27T17:44:58Z","updated_at":"2016-05-27T18:59:51Z","closed_at":null,"body":"Hello, \r\n   I am running test with the standard_pipeline and I thought that degrading the resolution by 10 in each direction for the input images and all templates would help speedup the process, but it does not. I do not know the details of the pipeline but I have to admit that I am a bit surprised. \r\n\r\nIts there a better way to speed up the process and still get the non linear registration? \r\n\r\nmincinfo before downgrade:\r\n```\r\nimage dimensions: zspace yspace xspace\r\n    dimension name         length         step        start\r\n    --------------         ------         ----        -----\r\n    zspace                    193            1          -78\r\n    yspace                    229            1         -132\r\n    xspace                    193            1          -96\r\n```\r\nmincinfo after downgrade:\r\n```\r\n    dimension name         length         step        start\r\n    --------------         ------         ----        -----\r\n    zspace                     20           10          -78\r\n    yspace                     23           10         -132\r\n    xspace                     20           10          -96\r\n```"},"comment":{"url":"https://api.github.com/repos/BIC-MNI/bic-pipelines/issues/comments/222227546","html_url":"https://github.com/BIC-MNI/bic-pipelines/issues/3#issuecomment-222227546","issue_url":"https://api.github.com/repos/BIC-MNI/bic-pipelines/issues/3","id":222227546,"user":{"login":"vfonov","id":628822,"avatar_url":"https://avatars.githubusercontent.com/u/628822?v=3","gravatar_id":"","url":"https://api.github.com/users/vfonov","html_url":"https://github.com/vfonov","followers_url":"https://api.github.com/users/vfonov/followers","following_url":"https://api.github.com/users/vfonov/following{/other_user}","gists_url":"https://api.github.com/users/vfonov/gists{/gist_id}","starred_url":"https://api.github.com/users/vfonov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vfonov/subscriptions","organizations_url":"https://api.github.com/users/vfonov/orgs","repos_url":"https://api.github.com/users/vfonov/repos","events_url":"https://api.github.com/users/vfonov/events{/privacy}","received_events_url":"https://api.github.com/users/vfonov/received_events","type":"User","site_admin":false},"created_at":"2016-05-27T18:59:51Z","updated_at":"2016-05-27T18:59:51Z","body":"you can add it as an option in https://github.com/BIC-MNI/bic-pipelines/blob/master/bin/pipeline_nlr.pl#L49\r\nand then pass it from here:\r\nhttps://github.com/BIC-MNI/bic-pipelines/blob/master/bin/standard_pipeline.pl#L347\r\n"}}
{"actor":{"display_login":"vfonov"}}