{"action":"created","issue":{"url":"https://api.github.com/repos/qtop/qtop/issues/237","repository_url":"https://api.github.com/repos/qtop/qtop","labels_url":"https://api.github.com/repos/qtop/qtop/issues/237/labels{/name}","comments_url":"https://api.github.com/repos/qtop/qtop/issues/237/comments","events_url":"https://api.github.com/repos/qtop/qtop/issues/237/events","html_url":"https://github.com/qtop/qtop/issues/237","id":192100845,"number":237,"title":"Memory leak / initialization issue","user":{"login":"nicoulaj","id":3162,"avatar_url":"https://avatars.githubusercontent.com/u/3162?v=3","gravatar_id":"","url":"https://api.github.com/users/nicoulaj","html_url":"https://github.com/nicoulaj","followers_url":"https://api.github.com/users/nicoulaj/followers","following_url":"https://api.github.com/users/nicoulaj/following{/other_user}","gists_url":"https://api.github.com/users/nicoulaj/gists{/gist_id}","starred_url":"https://api.github.com/users/nicoulaj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nicoulaj/subscriptions","organizations_url":"https://api.github.com/users/nicoulaj/orgs","repos_url":"https://api.github.com/users/nicoulaj/repos","events_url":"https://api.github.com/users/nicoulaj/events{/privacy}","received_events_url":"https://api.github.com/users/nicoulaj/received_events","type":"User","site_admin":false},"labels":[{"id":1213424,"url":"https://api.github.com/repos/qtop/qtop/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":15,"created_at":"2016-11-28T19:52:02Z","updated_at":"2016-12-06T19:26:05Z","closed_at":null,"body":" * On branch `ch-doc-update` 2926fa5\r\n * up to date CentOS 6\r\n * Python 2.6.6\r\n * SGE 6.2u5p3\r\n * Approximatively 1000 jobs on cluster, 20 hosts\r\n * Connected via SSH\r\n\r\nI launched `./qtop -b sge -Fgw`, but it was hanging (no output).\r\n\r\nAfter a while `top` shows:\r\n```\r\ntop - 19:42:22 up  4:06,  6 users,  load average: 1.05, 0.64, 0.27\r\nTasks: 1528 total,   5 running, 1523 sleeping,   0 stopped,   0 zombie\r\nCpu(s):  7.9%us,  0.2%sy,  0.0%ni, 91.8%id,  0.0%wa,  0.0%hi,  0.0%si,  0.1%st\r\nMem:  65957724k total, 62664740k used,  3292984k free,   148908k buffers\r\nSwap:        0k total,        0k used,        0k free,  3873712k cached\r\n\r\n   PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+  COMMAND                                       \r\n124379 centos    20   0 52.5g  52g 3676 R 99.8 83.2   1:26.21 python   \r\n```\r\n\r\nHere is the output of `pstack` if that helps:\r\n```\r\n#0  0x00007f09189c2a4f in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#1  0x00007f0918930a28 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#2  0x00007f09189c3377 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#3  0x00007f09189c3c0a in _PyObject_GC_Malloc () from /usr/lib64/libpython2.6.so.1.0\r\n#4  0x00007f09189c3c7d in _PyObject_GC_New () from /usr/lib64/libpython2.6.so.1.0\r\n#5  0x00007f091893b6f1 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#6  0x00007f0918907c5e in PyObject_GetIter () from /usr/lib64/libpython2.6.so.1.0\r\n#7  0x00007f0918995c2b in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#8  0x00007f0918923917 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#9  0x00007f0918994308 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#10 0x00007f0918999b7f in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#11 0x00007f0918999b7f in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#12 0x00007f091899a647 in PyEval_EvalCodeEx () from /usr/lib64/libpython2.6.so.1.0\r\n#13 0x00007f091892dca0 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#14 0x00007f0918906c63 in PyObject_Call () from /usr/lib64/libpython2.6.so.1.0\r\n#15 0x00007f09189196af in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#16 0x00007f0918906c63 in PyObject_Call () from /usr/lib64/libpython2.6.so.1.0\r\n#17 0x00007f091895867e in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#18 0x00007f0918957288 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#19 0x00007f0918906c63 in PyObject_Call () from /usr/lib64/libpython2.6.so.1.0\r\n#20 0x00007f0918997f64 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#21 0x00007f091899a647 in PyEval_EvalCodeEx () from /usr/lib64/libpython2.6.so.1.0\r\n#22 0x00007f091899a722 in PyEval_EvalCode () from /usr/lib64/libpython2.6.so.1.0\r\n#23 0x00007f0918998c82 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#24 0x00007f091899a647 in PyEval_EvalCodeEx () from /usr/lib64/libpython2.6.so.1.0\r\n#25 0x00007f0918998a94 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0\r\n#26 0x00007f091899a647 in PyEval_EvalCodeEx () from /usr/lib64/libpython2.6.so.1.0\r\n#27 0x00007f091892dca0 in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#28 0x00007f0918906c63 in PyObject_Call () from /usr/lib64/libpython2.6.so.1.0\r\n#29 0x00007f09189c1b7e in ?? () from /usr/lib64/libpython2.6.so.1.0\r\n#30 0x00007f09189c24c3 in Py_Main () from /usr/lib64/libpython2.6.so.1.0\r\n#31 0x00007f0917ca5d1d in __libc_start_main () from /lib64/libc.so.6\r\n#32 0x0000000000400649 in _start ()\r\n```"},"comment":{"url":"https://api.github.com/repos/qtop/qtop/issues/comments/265246869","html_url":"https://github.com/qtop/qtop/issues/237#issuecomment-265246869","issue_url":"https://api.github.com/repos/qtop/qtop/issues/237","id":265246869,"user":{"login":"sfranky","id":1530259,"avatar_url":"https://avatars.githubusercontent.com/u/1530259?v=3","gravatar_id":"","url":"https://api.github.com/users/sfranky","html_url":"https://github.com/sfranky","followers_url":"https://api.github.com/users/sfranky/followers","following_url":"https://api.github.com/users/sfranky/following{/other_user}","gists_url":"https://api.github.com/users/sfranky/gists{/gist_id}","starred_url":"https://api.github.com/users/sfranky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sfranky/subscriptions","organizations_url":"https://api.github.com/users/sfranky/orgs","repos_url":"https://api.github.com/users/sfranky/repos","events_url":"https://api.github.com/users/sfranky/events{/privacy}","received_events_url":"https://api.github.com/users/sfranky/received_events","type":"User","site_admin":false},"created_at":"2016-12-06T19:26:05Z","updated_at":"2016-12-06T19:26:05Z","body":"@nicoulaj but the other problem, does it remain the same with this fix?"}}
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