{"action":"opened","issue":{"url":"https://api.github.com/repos/BIMSBbioinfo/ciRcus/issues/6","repository_url":"https://api.github.com/repos/BIMSBbioinfo/ciRcus","labels_url":"https://api.github.com/repos/BIMSBbioinfo/ciRcus/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/BIMSBbioinfo/ciRcus/issues/6/comments","events_url":"https://api.github.com/repos/BIMSBbioinfo/ciRcus/issues/6/events","html_url":"https://github.com/BIMSBbioinfo/ciRcus/issues/6","id":139283287,"number":6,"title":"Output from find_circ error","user":{"login":"BaluPai","id":17724633,"avatar_url":"https://avatars.githubusercontent.com/u/17724633?v=3","gravatar_id":"","url":"https://api.github.com/users/BaluPai","html_url":"https://github.com/BaluPai","followers_url":"https://api.github.com/users/BaluPai/followers","following_url":"https://api.github.com/users/BaluPai/following{/other_user}","gists_url":"https://api.github.com/users/BaluPai/gists{/gist_id}","starred_url":"https://api.github.com/users/BaluPai/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BaluPai/subscriptions","organizations_url":"https://api.github.com/users/BaluPai/orgs","repos_url":"https://api.github.com/users/BaluPai/repos","events_url":"https://api.github.com/users/BaluPai/events{/privacy}","received_events_url":"https://api.github.com/users/BaluPai/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-03-08T13:51:27Z","updated_at":"2016-03-08T13:51:27Z","closed_at":null,"body":"I have been using find_circ v1.2 for generating my cirRNA result file.\r\nBut I get the following error message when using my files, whereas the test data runs are okay.\r\n_> circs.f <- annotateCircs(circs.bed =\"C:/Users/Balu/Desktop/sample_circ_candidates.bed\", annot.list = annot.list, assembly = \"hg19\")\r\nError in validObject(.Object) : \r\n  invalid class “GRanges” object: 'x@elementMetadata' is not parallel to 'x'\r\n_\r\nThere are a few differences among the files:\r\n1)There is no spliced_at_end column in the new version output\r\n2)Small differences in category column terms like, PERFECT instead of PERFECT_EXT etc..\r\n\r\nThe sample file is after filtering using grep.\r\n\r\nAny help/suggestions would be appreciated.\r\n\r\nRegards,\r\nBalu\r\n\r\n\r\n"}}