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\"WHERE pt.Name='SNR'\";\n-\t\t $query = $query . $where;\n-\n-\t\tif ($this->{debug}) {\n-\t\t    print $query . \"\\n\";\n-\t\t}\n-\n-\t\t$sth = ${$this->{'dbhr'}}->prepare($query);\n-\t\t$sth->execute();\n-\t\tif ( $sth->rows > 0 ) {\n-\t\t    $paramID = $sth->fetchrow_array;\n- \t\t}\n-\n-                $query = \"INSERT INTO parameter_file SET Value=?, \".\n-\t\t\t \"FileID=?, ParameterTypeID=?\";\n-                if ($this->{debug}) {\n-                    print $query . \"\\n\";\n+        $filename = $row->{'file'};\n+        $fileID = $row->{'FileID'};\n+        $base = basename($filename);\n+        $fullpath = $data_dir . \"/\" . $filename;\n+        if (defined(&Settings::getSNRModalities)\n+            && Settings::getSNRModalities($base)) {\n+                $cmd = \"noise_estimate --snr $fullpath\";\n+                $SNR = `$cmd`;\n+                $SNR =~ s/\\n//g;\n+                print \"$cmd \\n\" if ($this->{verbose});\n+                print \"SNR is: $SNR \\n\" if ($this->{verbose});\n+                my $file = NeuroDB::File->new($this->{dbhr});\n+                $file->loadFile($fileID);\n+                $SNR_old = $file->getParameter('SNR');\n+                if ((defined ($SNR_old)) && ($SNR_old != $SNR)) {","path":"uploadNeuroDB/NeuroDB/MRIProcessingUtility.pm","position":58,"original_position":58,"commit_id":"e420b556983b367100ea382b3b8ac2484f40614b","original_commit_id":"e420b556983b367100ea382b3b8ac2484f40614b","user":{"login":"gluneau","id":2903505,"avatar_url":"https://avatars.githubusercontent.com/u/2903505?v=3","gravatar_id":"","url":"https://api.github.com/users/gluneau","html_url":"https://github.com/gluneau","followers_url":"https://api.github.com/users/gluneau/followers","following_url":"https://api.github.com/users/gluneau/following{/other_user}","gists_url":"https://api.github.com/users/gluneau/gists{/gist_id}","starred_url":"https://api.github.com/users/gluneau/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gluneau/subscriptions","organizations_url":"https://api.github.com/users/gluneau/orgs","repos_url":"https://api.github.com/users/gluneau/repos","events_url":"https://api.github.com/users/gluneau/events{/privacy}","received_events_url":"https://api.github.com/users/gluneau/received_events","type":"User","site_admin":false},"body":"SNR is:  \r\nArgument \"\" isn't numeric in numeric ne (!=) at /data/ibis/bin/mri/uploadNeuroDB/NeuroDB/MRIProcessingUtility.pm \r\n\r\nMay need to break it into two if.","created_at":"2016-10-19T15:23:28Z","updated_at":"2016-10-19T15:23:28Z","html_url":"https://github.com/aces/Loris-MRI/pull/153#discussion_r84096144","pull_request_url":"https://api.github.com/repos/aces/Loris-MRI/pulls/153","_links":{"self":{"href":"https://api.github.com/repos/aces/Loris-MRI/pulls/comments/84096144"},"html":{"href":"https://github.com/aces/Loris-MRI/pull/153#discussion_r84096144"},"pull_request":{"href":"https://api.github.com/repos/aces/Loris-MRI/pulls/153"}}},"pull_request":{"url":"https://api.github.com/repos/aces/Loris-MRI/pulls/153","id":81716500,"html_url":"https://github.com/aces/Loris-MRI/pull/153","diff_url":"https://github.com/aces/Loris-MRI/pull/153.diff","patch_url":"https://github.com/aces/Loris-MRI/pull/153.patch","issue_url":"https://api.github.com/repos/aces/Loris-MRI/issues/153","number":153,"state":"open","locked":false,"title":"mysql error on duplicate entries","user":{"login":"MounaSafiHarab","id":15198379,"avatar_url":"https://avatars.githubusercontent.com/u/15198379?v=3","gravatar_id":"","url":"https://api.github.com/users/MounaSafiHarab","html_url":"https://github.com/MounaSafiHarab","followers_url":"https://api.github.com/users/MounaSafiHarab/followers","following_url":"https://api.github.com/users/MounaSafiHarab/following{/other_user}","gists_url":"https://api.github.com/users/MounaSafiHarab/gists{/gist_id}","starred_url":"https://api.github.com/users/MounaSafiHarab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MounaSafiHarab/subscriptions","organizations_url":"https://api.github.com/users/MounaSafiHarab/orgs","repos_url":"https://api.github.com/users/MounaSafiHarab/repos","events_url":"https://api.github.com/users/MounaSafiHarab/events{/privacy}","received_events_url":"https://api.github.com/users/MounaSafiHarab/received_events","type":"User","site_admin":false},"body":"This pull request re-computes the SNR basing it on setParameter() and getParameter() built-in functions... It also checks if the new SNR is different from the old/stored SNR (happening in the case where the noise_estimate algorithm from the MincToolKit is updated) and stores the new SNR value.\r\n\r\n(The computeSNR() in the 16.1 branch could throw an exception (of duplicate entries; If the file already had an SNR entry, i.e. FileID, ParameterTypeID exists, and we re-run tarchiveLoader for example).\r\n\r\n","created_at":"2016-08-17T21:05:10Z","updated_at":"2016-10-19T15:23:28Z","closed_at":null,"merged_at":null,"merge_commit_sha":"79332e375876f69bd04cc5812c03efca7171f55d","assignee":{"login":"driusan","id":498329,"avatar_url":"https://avatars.githubusercontent.com/u/498329?v=3","gravatar_id":"","url":"https://api.github.com/users/driusan","html_url":"https://github.com/driusan","followers_url":"https://api.github.com/users/driusan/followers","following_url":"https://api.github.com/users/driusan/following{/other_user}","gists_url":"https://api.github.com/users/driusan/gists{/gist_id}","starred_url":"https://api.github.com/users/driusan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/driusan/subscriptions","organizations_url":"https://api.github.com/users/driusan/orgs","repos_url":"https://api.github.com/users/driusan/repos","events_url":"https://api.github.com/users/driusan/events{/privacy}","received_events_url":"https://api.github.com/users/driusan/received_events","type":"User","site_admin":false},"assignees":[{"login":"driusan","id":498329,"avatar_url":"https://avatars.githubusercontent.com/u/498329?v=3","gravatar_id":"","url":"https://api.github.com/users/driusan","html_url":"https://github.com/driusan","followers_url":"https://api.github.com/users/driusan/followers","following_url":"https://api.github.com/users/driusan/following{/other_user}","gists_url":"https://api.github.com/users/driusan/gists{/gist_id}","starred_url":"https://api.github.com/users/driusan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/driusan/subscriptions","organizations_url":"https://api.github.com/users/driusan/orgs","repos_url":"https://api.github.com/users/driusan/repos","events_url":"https://api.github.com/users/driusan/events{/privacy}","received_events_url":"https://api.github.com/users/driusan/received_events","type":"User","site_admin":false},{"login":"gluneau","id":2903505,"avatar_url":"https://avatars.githubusercontent.com/u/2903505?v=3","gravatar_id":"","url":"https://api.github.com/users/gluneau","html_url":"https://github.com/gluneau","followers_url":"https://api.github.com/users/gluneau/followers","following_url":"https://api.github.com/users/gluneau/following{/other_user}","gists_url":"https://api.github.com/users/gluneau/gists{/gist_id}","starred_url":"https://api.github.com/users/gluneau/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gluneau/subscriptions","organizations_url":"https://api.github.com/users/gluneau/orgs","repos_url":"https://api.github.com/users/gluneau/repos","events_url":"https://api.github.com/users/gluneau/events{/privacy}","received_events_url":"https://api.github.com/users/gluneau/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/aces/Loris-MRI/milestones/5","html_url":"https://github.com/aces/Loris-MRI/milestones/17.0","labels_url":"https://api.github.com/repos/aces/Loris-MRI/milestones/5/labels","id":1777984,"number":5,"title":"17.0","description":"","creator":{"login":"christinerogers","id":827619,"avatar_url":"https://avatars.githubusercontent.com/u/827619?v=3","gravatar_id":"","url":"https://api.github.com/users/christinerogers","html_url":"https://github.com/christinerogers","followers_url":"https://api.github.com/users/christinerogers/followers","following_url":"https://api.github.com/users/christinerogers/following{/other_user}","gists_url":"https://api.github.com/users/christinerogers/gists{/gist_id}","starred_url":"https://api.github.com/users/christinerogers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/christinerogers/subscriptions","organizations_url":"https://api.github.com/users/christinerogers/orgs","repos_url":"https://api.github.com/users/christinerogers/repos","events_url":"https://api.github.com/users/christinerogers/events{/privacy}","received_events_url":"https://api.github.com/users/christinerogers/received_events","type":"User","site_admin":false},"open_issues":9,"closed_issues":4,"state":"open","created_at":"2016-05-20T03:23:38Z","updated_at":"2016-10-17T13:02:42Z","due_on":"2016-11-01T04:00:00Z","closed_at":null},"commits_url":"https://api.github.com/repos/aces/Loris-MRI/pulls/153/commits","review_comments_url":"https://api.github.com/repos/aces/Loris-MRI/pulls/153/comments","review_comment_url":"https://api.github.com/repos/aces/Loris-MRI/pulls/comments{/number}","comments_url":"https://api.github.com/repos/aces/Loris-MRI/issues/153/comments","statuses_url":"https://api.github.com/repos/aces/Loris-MRI/statuses/e420b556983b367100ea382b3b8ac2484f40614b","head":{"label":"MounaSafiHarab:SNRDuplicateEntry","ref":"SNRDuplicateEntry","sha":"e420b556983b367100ea382b3b8ac2484f40614b","user":{"login":"MounaSafiHarab","id":15198379,"avatar_url":"https://avatars.githubusercontent.com/u/15198379?v=3","gravatar_id":"","url":"https://api.github.com/users/MounaSafiHarab","html_url":"https://github.com/MounaSaf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