{"action":"created","issue":{"url":"https://api.github.com/repos/nexml/nexml.java/issues/14","repository_url":"https://api.github.com/repos/nexml/nexml.java","labels_url":"https://api.github.com/repos/nexml/nexml.java/issues/14/labels{/name}","comments_url":"https://api.github.com/repos/nexml/nexml.java/issues/14/comments","events_url":"https://api.github.com/repos/nexml/nexml.java/issues/14/events","html_url":"https://github.com/nexml/nexml.java/issues/14","id":135237369,"number":14,"title":"uncertain cells in nucleotide data","user":{"login":"DMaddison","id":1263358,"avatar_url":"https://avatars.githubusercontent.com/u/1263358?v=3","gravatar_id":"","url":"https://api.github.com/users/DMaddison","html_url":"https://github.com/DMaddison","followers_url":"https://api.github.com/users/DMaddison/followers","following_url":"https://api.github.com/users/DMaddison/following{/other_user}","gists_url":"https://api.github.com/users/DMaddison/gists{/gist_id}","starred_url":"https://api.github.com/users/DMaddison/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/DMaddison/subscriptions","organizations_url":"https://api.github.com/users/DMaddison/orgs","repos_url":"https://api.github.com/users/DMaddison/repos","events_url":"https://api.github.com/users/DMaddison/events{/privacy}","received_events_url":"https://api.github.com/users/DMaddison/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-02-21T18:14:58Z","updated_at":"2016-02-21T20:52:36Z","closed_at":null,"body":"In Mesquite, when exporting a nucleotide file, and exception is thrown if there are uncertain cells in the matrix (e.g. R =A/G). Should be able to export these without complaint using the ambiguity codes.\r\n"},"comment":{"url":"https://api.github.com/repos/nexml/nexml.java/issues/comments/186913279","html_url":"https://github.com/nexml/nexml.java/issues/14#issuecomment-186913279","issue_url":"https://api.github.com/repos/nexml/nexml.java/issues/14","id":186913279,"user":{"login":"rvosa","id":106490,"avatar_url":"https://avatars.githubusercontent.com/u/106490?v=3","gravatar_id":"","url":"https://api.github.com/users/rvosa","html_url":"https://github.com/rvosa","followers_url":"https://api.github.com/users/rvosa/followers","following_url":"https://api.github.com/users/rvosa/following{/other_user}","gists_url":"https://api.github.com/users/rvosa/gists{/gist_id}","starred_url":"https://api.github.com/users/rvosa/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rvosa/subscriptions","organizations_url":"https://api.github.com/users/rvosa/orgs","repos_url":"https://api.github.com/users/rvosa/repos","events_url":"https://api.github.com/users/rvosa/events{/privacy}","received_events_url":"https://api.github.com/users/rvosa/received_events","type":"User","site_admin":false},"created_at":"2016-02-21T20:52:36Z","updated_at":"2016-02-21T20:52:36Z","body":"Hi David,\r\n\r\nIs this actually a manifestation of the case sensitivity of the alphabet - as per your email - or do we have a bug that chokes on valid IUPAC ambiguity codes? This really _should_ work if the case is right. Would you mind pasting the stack trace in here (if you have one)?"}}