{"comment":{"url":"https://api.github.com/repos/ThierryO/multimput/comments/15420823","html_url":"https://github.com/ThierryO/multimput/commit/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9#commitcomment-15420823","id":15420823,"user":{"login":"lintr-bot","id":10925265,"avatar_url":"https://avatars.githubusercontent.com/u/10925265?v=3","gravatar_id":"","url":"https://api.github.com/users/lintr-bot","html_url":"https://github.com/lintr-bot","followers_url":"https://api.github.com/users/lintr-bot/followers","following_url":"https://api.github.com/users/lintr-bot/following{/other_user}","gists_url":"https://api.github.com/users/lintr-bot/gists{/gist_id}","starred_url":"https://api.github.com/users/lintr-bot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lintr-bot/subscriptions","organizations_url":"https://api.github.com/users/lintr-bot/orgs","repos_url":"https://api.github.com/users/lintr-bot/repos","events_url":"https://api.github.com/users/lintr-bot/events{/privacy}","received_events_url":"https://api.github.com/users/lintr-bot/received_events","type":"User","site_admin":false},"position":null,"line":null,"path":null,"commit_id":"baf02d0d8da31e5eb874b1ba96e556eae7eef4b9","created_at":"2016-01-13T11:14:00Z","updated_at":"2016-01-13T11:14:00Z","body":"[inst/paper_simulation/generate_data_design.R:37:14:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data_design.R#L37) *warning:* **no visible global function definition for ‘missingObserved’**\n```r\n​  dataset <- missingObserved(dataset)\n             ^~~~~~~~~~~~~~~\n```\n[inst/paper_simulation/generate_data_random.R:45:14:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data_random.R#L45) *warning:* **no visible global function definition for ‘missingAtRandom’**\n```r\n​  dataset <- missingAtRandom(dataset, proportion = proportion)\n             ^~~~~~~~~~~~~~~\n```\n[inst/paper_simulation/generate_data_random.R:79:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data_random.R#L79) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(file.exists(path)){\n  ^\n```\n[inst/paper_simulation/generate_data_random.R:93:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data_random.R#L93) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/generate_data.R:35:14:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data.R#L35) *warning:* **no visible global function definition for ‘missingObserved’**\n```r\n​  dataset <- missingObserved(dataset)\n             ^~~~~~~~~~~~~~~\n```\n[inst/paper_simulation/generate_data.R:61:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data.R#L61) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(file.exists(path)){\n  ^\n```\n[inst/paper_simulation/generate_data.R:71:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/generate_data.R#L71) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/inla_impute_2.R:21:5:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute_2.R#L21) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​  if(class(imputation) == \"try-error\"){\n    ^\n```\n[inst/paper_simulation/inla_impute_2.R:36:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute_2.R#L36) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(file.exists(path)){\n  ^\n```\n[inst/paper_simulation/inla_impute_2.R:50:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute_2.R#L50) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/inla_impute_3.R:37:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute_3.R#L37) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(file.exists(path)){\n  ^\n```\n[inst/paper_simulation/inla_impute_3.R:51:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute_3.R#L51) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/inla_impute.R:20:5:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute.R#L20) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​  if(class(imputation) == \"try-error\"){\n    ^\n```\n[inst/paper_simulation/inla_impute.R:38:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute.R#L38) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(file.exists(path)){\n  ^\n```\n[inst/paper_simulation/inla_impute.R:51:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_impute.R#L51) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/inla_index.R:52:13:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_index.R#L52) *warning:* **no visible global function definition for ‘summarizeImputationGLM.nb’**\n```r\n​  output <- summarizeImputationGLM.nb(data = total, rhs = \"0 + Year + Period\")\n            ^~~~~~~~~~~~~~~~~~~~~~~~~\n```\n[inst/paper_simulation/inla_index.R:122:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/inla_index.R#L122) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/trim_create.R:119:3:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/trim_create.R#L119) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​if(n.cpu > 1){\n  ^\n```\n[inst/paper_simulation/truth.R:21:12:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/truth.R#L21) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​  model <- glm.nb(x ~ 0 + Year + Period, data = total)\n           ^~~~~~\n```\n[inst/paper_simulation/truth.R:29:13:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/truth.R#L29) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​  model2 <- glm.nb(x ~ 0 + Year, data = total)\n            ^~~~~~\n```\n[inst/paper_simulation/underhill.R:18:31:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/underhill.R#L18) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​    initial <- round(exp(coef(glm.nb(Observed ~ 1, data = dataset))))\n                              ^~~~~~\n```\n[inst/paper_simulation/underhill.R:44:12:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/inst/paper_simulation/underhill.R#L44) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​  model <- glm.nb(x ~ 0 + Year + Period, data = total)\n           ^~~~~~\n```\n[R/imputeUnderhill.R:23:16:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/R/imputeUnderhill.R#L23) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​      model <- glm.nb(formula, data = data)\n               ^~~~~~\n```\n[R/imputeUnderhillAltered.R:19:14:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/R/imputeUnderhillAltered.R#L19) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​    model <- glm.nb(formula, data = data)\n             ^~~~~~\n```\n[R/missingVolunteer.R:42:6:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/R/missingVolunteer.R#L42) *style:* **Place a space before left parenthesis, except in a function call.**\n```r\n​  for(i in seq(2, length(years), by = 1)){\n     ^\n```\n[R/testMethods.R:16:29:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/R/testMethods.R#L16) *warning:* **no visible global function definition for ‘glm.nb’, Did you mean 'nlminb'?**\n```r\n​  initial <- round(exp(coef(glm.nb(Observed ~ 1, data = dataset))))\n                            ^~~~~~\n```\n[R/testMethods.R:161:10:](https://github.com/ThierryO/multimput/blob/baf02d0d8da31e5eb874b1ba96e556eae7eef4b9/R/testMethods.R#L161) *warning:* **no visible global function definition for ‘summarizeImputationGLM’**\n```r\n​  tmp <- summarizeImputationGLM(data = test, rhs = \"0 + Year + Period\")\n         ^~~~~~~~~~~~~~~~~~~~~~\n```"}}