{"action":"created","issue":{"url":"https://api.github.com/repos/secastel/phaser/issues/15","repository_url":"https://api.github.com/repos/secastel/phaser","labels_url":"https://api.github.com/repos/secastel/phaser/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/secastel/phaser/issues/15/comments","events_url":"https://api.github.com/repos/secastel/phaser/issues/15/events","html_url":"https://github.com/secastel/phaser/issues/15","id":187313706,"number":15,"title":"unsupported operand type(s) for +=: 'int' and 'str'","user":{"login":"colindaven","id":6094884,"avatar_url":"https://avatars.githubusercontent.com/u/6094884?v=3","gravatar_id":"","url":"https://api.github.com/users/colindaven","html_url":"https://github.com/colindaven","followers_url":"https://api.github.com/users/colindaven/followers","following_url":"https://api.github.com/users/colindaven/following{/other_user}","gists_url":"https://api.github.com/users/colindaven/gists{/gist_id}","starred_url":"https://api.github.com/users/colindaven/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/colindaven/subscriptions","organizations_url":"https://api.github.com/users/colindaven/orgs","repos_url":"https://api.github.com/users/colindaven/repos","events_url":"https://api.github.com/users/colindaven/events{/privacy}","received_events_url":"https://api.github.com/users/colindaven/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-11-04T11:45:44Z","updated_at":"2016-11-04T21:45:01Z","closed_at":null,"body":"Hi Stephane,\r\n\r\ntrying 0.9.2 for the first time today I came across this new bug \r\n\r\nBest wishes,\r\nColin\r\n\r\n#3. Identifying connected variants...\r\n     calculating sequencing noise level...\r\n     sequencing noise level estimated at 0.003902\r\n     creating read sets...\r\n     generating read connectivity map...\r\n     testing variant connections versus noise...\r\n     25551 variant connections dropped because of conflicting configurations (threshold = 0.010000)\r\n     104943 variants covered by at least 1 read\r\n#4. Identifying haplotype blocks...\r\n#5. Phasing blocks...\r\n#6. Outputting haplotypes...\r\nTraceback (most recent call last):\r\n  File \"/home/bioinformatics/NAS01/programs/phaser/phaser/phaser/phaser.py\", line 2009, in <module>\r\n    main();\r\n  File \"/home/bioinformatics/NAS01/programs/phaser/phaser/phaser/phaser.py\", line 779, in main\r\n    phase_support[0] += maf;\r\nTypeError: unsupported operand type(s) for +=: 'int' and 'str'\r\n"},"comment":{"url":"https://api.github.com/repos/secastel/phaser/issues/comments/258555468","html_url":"https://github.com/secastel/phaser/issues/15#issuecomment-258555468","issue_url":"https://api.github.com/repos/secastel/phaser/issues/15","id":258555468,"user":{"login":"secastel","id":9827367,"avatar_url":"https://avatars.githubusercontent.com/u/9827367?v=3","gravatar_id":"","url":"https://api.github.com/users/secastel","html_url":"https://github.com/secastel","followers_url":"https://api.github.com/users/secastel/followers","following_url":"https://api.github.com/users/secastel/following{/other_user}","gists_url":"https://api.github.com/users/secastel/gists{/gist_id}","starred_url":"https://api.github.com/users/secastel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/secastel/subscriptions","organizations_url":"https://api.github.com/users/secastel/orgs","repos_url":"https://api.github.com/users/secastel/repos","events_url":"https://api.github.com/users/secastel/events{/privacy}","received_events_url":"https://api.github.com/users/secastel/received_events","type":"User","site_admin":false},"created_at":"2016-11-04T21:45:01Z","updated_at":"2016-11-04T21:45:01Z","body":"I'm not exactly sure what is causing the problem, it could be something to do with your input VCF, but I think I have put in some code that should prevent this error from occurring. If you have a chance I would really appreciate if you could try running the attached version of phaser with the data that was causing 0.9.3 to crash. Please let me know if it runs without error.\r\n\r\nThanks so much!\r\n\r\n[phaser_093_test.py.zip](https://github.com/secastel/phaser/files/572712/phaser_093_test.py.zip)"}}
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