{"action":"created","issue":{"url":"https://api.github.com/repos/iancze/Starfish/issues/63","repository_url":"https://api.github.com/repos/iancze/Starfish","labels_url":"https://api.github.com/repos/iancze/Starfish/issues/63/labels{/name}","comments_url":"https://api.github.com/repos/iancze/Starfish/issues/63/comments","events_url":"https://api.github.com/repos/iancze/Starfish/issues/63/events","html_url":"https://github.com/iancze/Starfish/issues/63","id":148221615,"number":63,"title":"Housekeeping of folders and files","user":{"login":"iancze","id":467948,"avatar_url":"https://avatars.githubusercontent.com/u/467948?v=3","gravatar_id":"","url":"https://api.github.com/users/iancze","html_url":"https://github.com/iancze","followers_url":"https://api.github.com/users/iancze/followers","following_url":"https://api.github.com/users/iancze/following{/other_user}","gists_url":"https://api.github.com/users/iancze/gists{/gist_id}","starred_url":"https://api.github.com/users/iancze/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/iancze/subscriptions","organizations_url":"https://api.github.com/users/iancze/orgs","repos_url":"https://api.github.com/users/iancze/repos","events_url":"https://api.github.com/users/iancze/events{/privacy}","received_events_url":"https://api.github.com/users/iancze/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-04-14T01:01:55Z","updated_at":"2016-04-15T13:06:45Z","closed_at":null,"body":"The repository is currently quite cluttered, which is entirely my fault. Please let me know if anyone objects to the following changes:\r\n\r\n* I propose making an `assets` directory that will store things like the `config.yaml` file and other files that will be used to initialize a project directory.\r\n\r\n* I'm conflicted on the `data` folder. Since the cookbook requires these existing datasets, I think we should make them easy for users to obtain, but it seems unnecessary to have a separate folder just for a couple HDF5 files. We could upload these to figshare and provide a download link in the cookbook. If anyone has any strong feelings on this, please let me know.\r\n\r\n* `extern` is entirely unused now. This was from when we were wrapping the SuiteSparse library, and it's stayed around as a reminder of the old way of doing the Gibbs update, where we included a loop sampling in the local parameters for an individual line. Now this is done in an independent cycle from the other parameters, which yields nearly the same answer but is much faster and simpler to implement.\r\n\r\n* `filters` could be moved to `assets`, but I think the filter profiles themselves will want to be revisited before we tout them as a feature.\r\n\r\n* `plots` and `tex` obviously contain the source of the paper. While it's interesting from an open science viewpoint, I'm wondering if these can just be split off into their own repository. I envision most users will just want to read a PDF separately (from the arXiv) and not actually require the tex within the Starfish package."},"comment":{"url":"https://api.github.com/repos/iancze/Starfish/issues/comments/210458615","html_url":"https://github.com/iancze/Starfish/issues/63#issuecomment-210458615","issue_url":"https://api.github.com/repos/iancze/Starfish/issues/63","id":210458615,"user":{"login":"iancze","id":467948,"avatar_url":"https://avatars.githubusercontent.com/u/467948?v=3","gravatar_id":"","url":"https://api.github.com/users/iancze","html_url":"https://github.com/iancze","followers_url":"https://api.github.com/users/iancze/followers","following_url":"https://api.github.com/users/iancze/following{/other_user}","gists_url":"https://api.github.com/users/iancze/gists{/gist_id}","starred_url":"https://api.github.com/users/iancze/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/iancze/subscriptions","organizations_url":"https://api.github.com/users/iancze/orgs","repos_url":"https://api.github.com/users/iancze/repos","events_url":"https://api.github.com/users/iancze/events{/privacy}","received_events_url":"https://api.github.com/users/iancze/received_events","type":"User","site_admin":false},"created_at":"2016-04-15T13:06:45Z","updated_at":"2016-04-15T13:06:45Z","body":"More data would definitely help! If there's something to keep my lonely WASP-14 and Gl51 spectra company then I think `data` should stay :)"}}