{"action":"opened","issue":{"url":"https://api.github.com/repos/baoe/AlignGraph/issues/22","repository_url":"https://api.github.com/repos/baoe/AlignGraph","labels_url":"https://api.github.com/repos/baoe/AlignGraph/issues/22/labels{/name}","comments_url":"https://api.github.com/repos/baoe/AlignGraph/issues/22/comments","events_url":"https://api.github.com/repos/baoe/AlignGraph/issues/22/events","html_url":"https://github.com/baoe/AlignGraph/issues/22","id":157485833,"number":22,"title":"How to chose pblat instead of blat or nucmer","user":{"login":"DHatziioanou","id":17125380,"avatar_url":"https://avatars.githubusercontent.com/u/17125380?v=3","gravatar_id":"","url":"https://api.github.com/users/DHatziioanou","html_url":"https://github.com/DHatziioanou","followers_url":"https://api.github.com/users/DHatziioanou/followers","following_url":"https://api.github.com/users/DHatziioanou/following{/other_user}","gists_url":"https://api.github.com/users/DHatziioanou/gists{/gist_id}","starred_url":"https://api.github.com/users/DHatziioanou/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/DHatziioanou/subscriptions","organizations_url":"https://api.github.com/users/DHatziioanou/orgs","repos_url":"https://api.github.com/users/DHatziioanou/repos","events_url":"https://api.github.com/users/DHatziioanou/events{/privacy}","received_events_url":"https://api.github.com/users/DHatziioanou/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-05-30T11:36:20Z","updated_at":"2016-05-30T11:36:20Z","closed_at":null,"body":"Hello,\r\n\r\nI see I can chose to use nucmer instead of blat with the --fastMap option but I can't find anywhere in the files or manual how to chose pblat over blat. I would like to use pblat both because its parallelized and because it can manager larger contigs. Is there anyway of specifying that pblat should be used?\r\n\r\nThanks,\r\nDiane"}}
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