{"action":"opened","issue":{"url":"https://api.github.com/repos/Amber-MD/cpptraj/issues/333","repository_url":"https://api.github.com/repos/Amber-MD/cpptraj","labels_url":"https://api.github.com/repos/Amber-MD/cpptraj/issues/333/labels{/name}","comments_url":"https://api.github.com/repos/Amber-MD/cpptraj/issues/333/comments","events_url":"https://api.github.com/repos/Amber-MD/cpptraj/issues/333/events","html_url":"https://github.com/Amber-MD/cpptraj/issues/333","id":156589323,"number":333,"title":"cpptraj command line: can not write file","user":{"login":"hainm","id":4451957,"avatar_url":"https://avatars.githubusercontent.com/u/4451957?v=3","gravatar_id":"","url":"https://api.github.com/users/hainm","html_url":"https://github.com/hainm","followers_url":"https://api.github.com/users/hainm/followers","following_url":"https://api.github.com/users/hainm/following{/other_user}","gists_url":"https://api.github.com/users/hainm/gists{/gist_id}","starred_url":"https://api.github.com/users/hainm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hainm/subscriptions","organizations_url":"https://api.github.com/users/hainm/orgs","repos_url":"https://api.github.com/users/hainm/repos","events_url":"https://api.github.com/users/hainm/events{/privacy}","received_events_url":"https://api.github.com/users/hainm/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-05-24T19:27:05Z","updated_at":"2016-05-24T19:27:05Z","closed_at":null,"body":"```bash\r\ncpptraj/test (master) $ ../bin/cpptraj -p tz2.parm7 -c tz2.rst7 -x test.rst7\r\n```\r\n\r\ntrace\r\n```bash\r\n\r\nCPPTRAJ: Trajectory Analysis. V17.00b\r\n    ___  ___  ___  ___\r\n     | \\/ | \\/ | \\/ | \r\n    _|_/\\_|_/\\_|_/\\_|_\r\n\r\n| Date/time: 05/24/16 15:25:35\r\n| Available memory: 3.995 GB\r\n\r\n\tReading 'tz2.parm7' as Amber Topology\r\n\tThis Amber topology does not include atomic numbers.\r\n\tAssigning elements from atom masses/names.\r\n\tNo SCEE section: setting Amber default (1.2)\r\n\tNo SCNB section: setting Amber default (2.0)\r\n\tReading 'tz2.rst7' as Amber Restart\r\n\tSetting active reference for distance-based masks: 'tz2.rst7'\r\nWarning: Output traj specified before trajin/ensemble. Assuming trajin.\r\n\tWriting 'test.rst7' as Amber Restart\r\n---------- RUN BEGIN -------------------------------------------------\r\nWarning: No input trajectories specified.\r\n\r\nRUN TIMING:\r\nTIME:\t\tInit               : 0.0000 s (  0.00%)\r\nTIME:\t\tTrajectory Process : 0.0000 s (  0.00%)\r\nTIME:\t\tAction Post        : 0.0000 s (  0.00%)\r\nTIME:\t\tAnalysis           : 0.0000 s (  0.00%)\r\nTIME:\t\tData File Write    : 0.0000 s (  9.09%)\r\nTIME:\t\tOther              : 0.0000 s (  0.91%)\r\nTIME:\tRun Total 0.0000 s\r\n---------- RUN END ---------------------------------------------------\r\nTIME: Total execution time: 0.0908 seconds.\r\n--------------------------------------------------------------------------------\r\nTo cite CPPTRAJ use:\r\nDaniel R. Roe and Thomas E. Cheatham, III, \"PTRAJ and CPPTRAJ: Software for\r\n  Processing and Analysis of Molecular Dynamics Trajectory Data\". J. Chem.\r\n  Theory Comput., 2013, 9 (7), pp 3084-3095.\r\n```"}}
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