{"action":"opened","issue":{"url":"https://api.github.com/repos/4Quant/COPD-staging/issues/72","repository_url":"https://api.github.com/repos/4Quant/COPD-staging","labels_url":"https://api.github.com/repos/4Quant/COPD-staging/issues/72/labels{/name}","comments_url":"https://api.github.com/repos/4Quant/COPD-staging/issues/72/comments","events_url":"https://api.github.com/repos/4Quant/COPD-staging/issues/72/events","html_url":"https://github.com/4Quant/COPD-staging/issues/72","id":151161562,"number":72,"title":"blocking on run2","user":{"login":"drtjre","id":16701211,"avatar_url":"https://avatars.githubusercontent.com/u/16701211?v=3","gravatar_id":"","url":"https://api.github.com/users/drtjre","html_url":"https://github.com/drtjre","followers_url":"https://api.github.com/users/drtjre/followers","following_url":"https://api.github.com/users/drtjre/following{/other_user}","gists_url":"https://api.github.com/users/drtjre/gists{/gist_id}","starred_url":"https://api.github.com/users/drtjre/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/drtjre/subscriptions","organizations_url":"https://api.github.com/users/drtjre/orgs","repos_url":"https://api.github.com/users/drtjre/repos","events_url":"https://api.github.com/users/drtjre/events{/privacy}","received_events_url":"https://api.github.com/users/drtjre/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/4Quant/COPD-staging/milestones/16","html_url":"https://github.com/4Quant/COPD-staging/milestones/COPD-Staging%20Final%20Tests%20-%20Prepare","labels_url":"https://api.github.com/repos/4Quant/COPD-staging/milestones/16/labels","id":1731096,"number":16,"title":"COPD-Staging Final Tests - Prepare","description":"To conclude the COPD-Staging Project, the following set of tests must be passed:\r\n\r\nInitial condition: OSIRIX PACS running on YETI populated with dataset of 200+ COPD CT Thorax exams (Stolz45 and Stolz174 combined datasets)\r\nTest 1:\r\nFrom a spreadsheet of 43 Patient Names (\"Stolz45\"), find a list of studies/sequences of interest using the 4Quant package (Raqea+pacstool)\r\nRequest quantitative data, Lung Volume, PD15, LAA-950, for all 43 studies.  \r\nComparing results, confirm that these values approach values previously calculated for this set in the semi-automatic manor (values compiled for Stolz for publication in early Jan2016).\r\nTest 2:\r\nFrom a spreadsheet of 200 Patient names (Stolz200+), find a list of studies/sequences of interest using the 4Quant package (Raqea+pacstool).\r\nRequest quantitative data, Lung Volume, PD15, LAA-950, for all 200 studies.  \r\nSelect 10 studies at random form these as a sub-sample.\r\nRequest intermediate image data showing Lung Segmentation for 10 sub-samples and Check for appropriateness.\r\nCompare results for these 10 to previously calculated data from the Stolz200+ study.\r\n","creator":{"login":"drtjre","id":16701211,"avatar_url":"https://avatars.githubusercontent.com/u/16701211?v=3","gravatar_id":"","url":"https://api.github.com/users/drtjre","html_url":"https://github.com/drtjre","followers_url":"https://api.github.com/users/drtjre/followers","following_url":"https://api.github.com/users/drtjre/following{/other_user}","gists_url":"https://api.github.com/users/drtjre/gists{/gist_id}","starred_url":"https://api.github.com/users/drtjre/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/drtjre/subscriptions","organizations_url":"https://api.github.com/users/drtjre/orgs","repos_url":"https://api.github.com/users/drtjre/repos","events_url":"https://api.github.com/users/drtjre/events{/privacy}","received_events_url":"https://api.github.com/users/drtjre/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":3,"state":"open","created_at":"2016-04-26T05:35:55Z","updated_at":"2016-04-26T15:12:20Z","due_on":"2016-04-29T22:00:00Z","closed_at":null},"comments":0,"created_at":"2016-04-26T15:12:20Z","updated_at":"2016-04-26T15:12:20Z","closed_at":null,"body":"Discover why this is blocking\r\n```\r\n\r\nselect patientname,seriesDescription,runmap(run2(fetch_dicom_imagej(studyInstanceUID,seriesInstanceUID),\"Segment Lung Tissue\",\"\"),\"Measure\",\"\") from Stolz45  WHERE PatientName like 'Turan%';\r\n\r\n```\r\n"}}