{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2140","repository_url":"https://api.github.com/repos/galaxyproject/galaxy","labels_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2140/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2140/comments","events_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2140/events","html_url":"https://github.com/galaxyproject/galaxy/issues/2140","id":147834739,"number":2140,"title":"Feature request - Filenames based on dataset collection identifier","user":{"login":"lparsons","id":645128,"avatar_url":"https://avatars.githubusercontent.com/u/645128?v=3","gravatar_id":"","url":"https://api.github.com/users/lparsons","html_url":"https://github.com/lparsons","followers_url":"https://api.github.com/users/lparsons/followers","following_url":"https://api.github.com/users/lparsons/following{/other_user}","gists_url":"https://api.github.com/users/lparsons/gists{/gist_id}","starred_url":"https://api.github.com/users/lparsons/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lparsons/subscriptions","organizations_url":"https://api.github.com/users/lparsons/orgs","repos_url":"https://api.github.com/users/lparsons/repos","events_url":"https://api.github.com/users/lparsons/events{/privacy}","received_events_url":"https://api.github.com/users/lparsons/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-04-12T18:25:25Z","updated_at":"2016-09-30T15:15:05Z","closed_at":null,"body":"I'm trying to incorporate the use of dataset collections to simplify workflows, esp. ones with many samples (e.g. RNA-Seq). One issue I'm running into is when I need to get the data outside of galaxy, either for external analysis (e.g. in R) or visualization on UCSC. In both cases, the data is referenced as the \"name\" of the file (e.g. \"Tophat on dataset 1 and 2: accepted hits\") instead of the collection id (e.g. sample A). It would be nice if there was a way to expose this \"collection id\" when exporting data."},"comment":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/comments/250771206","html_url":"https://github.com/galaxyproject/galaxy/issues/2140#issuecomment-250771206","issue_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2140","id":250771206,"user":{"login":"lparsons","id":645128,"avatar_url":"https://avatars.githubusercontent.com/u/645128?v=3","gravatar_id":"","url":"https://api.github.com/users/lparsons","html_url":"https://github.com/lparsons","followers_url":"https://api.github.com/users/lparsons/followers","following_url":"https://api.github.com/users/lparsons/following{/other_user}","gists_url":"https://api.github.com/users/lparsons/gists{/gist_id}","starred_url":"https://api.github.com/users/lparsons/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lparsons/subscriptions","organizations_url":"https://api.github.com/users/lparsons/orgs","repos_url":"https://api.github.com/users/lparsons/repos","events_url":"https://api.github.com/users/lparsons/events{/privacy}","received_events_url":"https://api.github.com/users/lparsons/received_events","type":"User","site_admin":false},"created_at":"2016-09-30T15:15:05Z","updated_at":"2016-09-30T15:15:05Z","body":"I was thinking file download (though downloading a collection would be VERY nice). Hadn't really thought about history export, it's so slow it isn't used much, but it would be great there too. Also, exposed when sent to external viewers such as UCSC."}}
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