{"action":"created","comment":{"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/comments/74832938","id":74832938,"diff_hunk":"@@ -265,34 +267,25 @@ def process_selection(select):\n     return select\n \n \n-class RMSD(object):\n-    \"\"\"Class to perform RMSD analysis on a trajectory.\n-\n-    Run the analysis with :meth:`RMSD.run`, which stores the results\n-    in the array :attr:`RMSD.rmsd`::","path":"package/MDAnalysis/analysis/rms.py","position":27,"original_position":27,"commit_id":"e298633ae4b093ccda1d17af913cc5718bc6c468","original_commit_id":"e298633ae4b093ccda1d17af913cc5718bc6c468","user":{"login":"orbeckst","id":237980,"avatar_url":"https://avatars.githubusercontent.com/u/237980?v=3","gravatar_id":"","url":"https://api.github.com/users/orbeckst","html_url":"https://github.com/orbeckst","followers_url":"https://api.github.com/users/orbeckst/followers","following_url":"https://api.github.com/users/orbeckst/following{/other_user}","gists_url":"https://api.github.com/users/orbeckst/gists{/gist_id}","starred_url":"https://api.github.com/users/orbeckst/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/orbeckst/subscriptions","organizations_url":"https://api.github.com/users/orbeckst/orgs","repos_url":"https://api.github.com/users/orbeckst/repos","events_url":"https://api.github.com/users/orbeckst/events{/privacy}","received_events_url":"https://api.github.com/users/orbeckst/received_events","type":"User","site_admin":false},"body":"The information for what the results are should still be *somewhere* as well as an indication what algorithms are used.\r\n\r\nWhat was the rationale for removing it from the class string?","created_at":"2016-08-15T20:53:43Z","updated_at":"2016-08-15T20:53:43Z","html_url":"https://github.com/MDAnalysis/mdanalysis/pull/934#discussion_r74832938","pull_request_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934","_links":{"self":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/comments/74832938"},"html":{"href":"https://github.com/MDAnalysis/mdanalysis/pull/934#discussion_r74832938"},"pull_request":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934"}}},"pull_request":{"url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934","id":81229630,"html_url":"https://github.com/MDAnalysis/mdanalysis/pull/934","diff_url":"https://github.com/MDAnalysis/mdanalysis/pull/934.diff","patch_url":"https://github.com/MDAnalysis/mdanalysis/pull/934.patch","issue_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/934","number":934,"state":"open","locked":false,"title":"RMSD Refactor","user":{"login":"jdetle","id":10944582,"avatar_url":"https://avatars.githubusercontent.com/u/10944582?v=3","gravatar_id":"","url":"https://api.github.com/users/jdetle","html_url":"https://github.com/jdetle","followers_url":"https://api.github.com/users/jdetle/followers","following_url":"https://api.github.com/users/jdetle/following{/other_user}","gists_url":"https://api.github.com/users/jdetle/gists{/gist_id}","starred_url":"https://api.github.com/users/jdetle/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jdetle/subscriptions","organizations_url":"https://api.github.com/users/jdetle/orgs","repos_url":"https://api.github.com/users/jdetle/repos","events_url":"https://api.github.com/users/jdetle/events{/privacy}","received_events_url":"https://api.github.com/users/jdetle/received_events","type":"User","site_admin":false},"body":"Fixes #893 \r\n\r\nChanges made in this Pull Request:\r\n - Pure refactor, only design changes\r\n- Split up run method into prepare and single frame\r\n\r\nPR Checklist\r\n------------\r\n - [x] Tests?\r\n - [x] Docs?\r\n - [x] CHANGELOG updated?\r\n - [x] Issue raised/referenced?\r\n","created_at":"2016-08-13T23:30:56Z","updated_at":"2016-08-15T20:53:43Z","closed_at":null,"merged_at":null,"merge_commit_sha":"93dcddc7d206912254bb4d392a434301ac5ea8ef","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934/commits","review_comments_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934/comments","review_comment_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/comments{/number}","comments_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/934/comments","statuses_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/statuses/e298633ae4b093ccda1d17af913cc5718bc6c468","head":{"label":"jdetle:RMSD","ref":"RMSD","sha":"e298633ae4b093ccda1d17af913cc5718bc6c468","user":{"login":"jdetle","id":10944582,"avatar_url":"https://avatars.githubusercontent.com/u/10944582?v=3","gravatar_id":"","url":"https://api.github.com/users/jdetle","html_url":"https://github.com/jdetle","followers_url":"https://api.github.com/users/jdetle/followers","following_url":"https://api.github.com/users/jdetle/following{/other_user}","gists_url":"https://api.github.com/users/jdetle/gists{/gist_id}","starred_url":"https://api.github.com/users/jdetle/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jdetle/subscriptions","organizations_url":"https://api.github.com/users/jdetle/orgs","repos_url":"https://api.github.com/users/jdetle/repos","events_url":"https://api.github.com/users/jdetle/events{/privacy}","received_events_url":"https://api.github.com/users/jdetle/received_events","type":"User","site_admin":false},"repo":{"id":54223025,"name":"mdanalysis","full_name":"jdetle/mdanalysis","owner":{"login":"jdetle","id":10944582,"avatar_url":"https://avatars.githubusercontent.com/u/10944582?v=3","gravatar_id":"","url":"https://api.github.com/users/jdetle","html_url":"https://github.com/jdetle","followers_url":"https://api.github.com/users/jdetle/followers","following_url":"https://api.github.com/users/jdetle/following{/other_user}","gists_url":"https://api.github.com/users/jdetle/gists{/gist_id}","starred_url":"https://api.github.com/users/jdetle/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jdetle/subscriptions","organizations_url":"https://api.github.com/users/jdetle/orgs","repos_url":"https://api.github.com/users/jdetle/repos","events_url":"https://api.github.com/users/jdetle/events{/privacy}","received_events_url":"https://api.github.com/users/jdetle/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/jdetle/mdanalysis","description":"MDAnalysis is a Python library to analyze molecular dynamics trajectories.","fork":true,"url":"https://api.github.com/repos/jdetle/mdanalysis","forks_url":"https://api.github.com/repos/jdetle/mdanalysis/forks","keys_url":"https://api.github.com/repos/jdetle/mdanalysis/keys{/key_id}","collaborators_url":"https://api.github.com/repos/jdetle/mdanalysis/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/jdetle/mdanalysis/teams","hooks_url":"https://api.github.com/repos/jdetle/mdanalysis/hooks","issue_events_url":"https://api.github.com/repos/jdetle/mdanalysis/issues/events{/number}","events_url":"https://api.github.com/repos/jdetle/mdanalysis/events","assignees_url":"https://api.github.com/repos/jdetle/mdanalysis/assignees{/user}","branches_url":"https://api.github.com/repos/jdetle/mdanalysis/branches{/branch}","tags_url":"https://api.github.com/repos/jdetle/mdanalysis/tags","blobs_url":"https://api.github.com/repos/jdetle/mdanalysis/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/jdetle/mdanalysis/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/jdetle/mdanalysis/git/refs{/sha}","trees_url":"https://api.github.com/repos/jdetle/mdanalysis/git/trees{/sha}","statuses_url":"https://api.github.com/repos/jdetle/mdanalysis/statuses/{sha}","languages_url":"https://api.github.com/repos/jdetle/mdanalysis/languages","stargazers_url":"https://api.github.com/repos/jdetle/mdanalysis/stargazers","contributors_url":"https://api.github.com/repos/jdetle/mdanalysis/contributors","subscribers_url":"https://api.github.com/repos/jdetle/mdanalysis/subscribers","subscription_url":"https://api.github.com/repos/jdetle/mdanalysis/subscription","commits_url":"https://api.github.com/repos/jdetle/mdanalysis/commits{/sha}","git_commits_url":"https://api.github.com/repos/jdetle/mdanalysis/git/commits{/sha}","comments_url":"https://api.github.com/repos/jdetle/mdanalysis/comments{/number}","issue_comment_url":"https://api.github.com/repos/jdetle/mdanalysis/issues/comments{/number}","contents_url":"https://api.github.com/repos/jdetle/mdanalysis/contents/{+path}","compare_url":"https://api.github.com/repos/jdetle/mdanalysis/compare/{base}...{head}","merges_url":"https://api.github.com/repos/jdetle/mdanalysis/merges","archive_url":"https://api.github.com/repos/jdetle/mdanalysis/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/jdetle/mdanalysis/downloads","issues_url":"https://api.github.com/repos/jdetle/mdanalysis/issues{/number}","pulls_url":"https://api.github.com/repos/jdetle/mdanalysis/pulls{/number}","milestones_url":"https://api.github.com/repos/jdetle/mdanalysis/milestones{/number}","notifications_url":"https://api.github.com/repos/jdetle/mdanalysis/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/jdetle/mdanalysis/labels{/name}","releases_url":"https://api.github.com/repos/jdetle/mdanalysis/releases{/id}","deployments_url":"https://api.github.com/repos/jdetle/mdanalysis/deployments","created_at":"2016-03-18T18:25:47Z","updated_at":"2016-03-18T18:25:51Z","pushed_at":"2016-08-14T23:48:26Z","git_url":"git://github.com/jdetle/mdanalysis.git","ssh_url":"git@github.com:jdetle/mdanalysis.git","clone_url":"https://github.com/jdetle/mdanalysis.git","svn_url":"https://github.com/jdetle/mdanalysis","homepage":"http://www.mdanalysis.org","size":258236,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":false,"has_downloads":false,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"develop"}},"base":{"label":"MDAnalysis:develop","ref":"develop","sha":"54d48dbaf1af9360af550bfc6f10c5d4e432f527","user":{"login":"MDAnalysis","id":11445951,"avatar_url":"https://avatars.githubusercontent.com/u/11445951?v=3","gravatar_id":"","url":"https://api.github.com/users/MDAnalysis","html_url":"https://github.com/MDAnalysis","followers_url":"https://api.github.com/users/MDAnalysis/followers","following_url":"https://api.github.com/users/MDAnalysis/following{/other_user}","gists_url":"https://api.github.com/users/MDAnalysis/gists{/gist_id}","starred_url":"https://api.github.com/users/MDAnalysis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MDAnalysis/subscriptions","organizations_url":"https://api.github.com/users/MDAnalysis/orgs","repos_url":"https://api.github.com/users/MDAnalysis/repos","events_url":"https://api.github.com/users/MDAnalysis/events{/privacy}","received_events_url":"https://api.github.com/users/MDAnalysis/received_events","type":"Organization","site_admin":false},"repo":{"id":33389183,"name":"mdanalysis","full_name":"MDAnalysis/mdanalysis","owner":{"login":"MDAnalysis","id":11445951,"avatar_url":"https://avatars.githubusercontent.com/u/11445951?v=3","gravatar_id":"","url":"https://api.github.com/users/MDAnalysis","html_url":"https://github.com/MDAnalysis","followers_url":"https://api.github.com/users/MDAnalysis/followers","following_url":"https://api.github.com/users/MDAnalysis/following{/other_user}","gists_url":"https://api.github.com/users/MDAnalysis/gists{/gist_id}","starred_url":"https://api.github.com/users/MDAnalysis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MDAnalysis/subscriptions","organizations_url":"https://api.github.com/users/MDAnalysis/orgs","repos_url":"https://api.github.com/users/MDAnalysis/repos","events_url":"https://api.github.com/users/MDAnalysis/events{/privacy}","received_events_url":"https://api.github.com/users/MDAnalysis/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/MDAnalysis/mdanalysis","description":"MDAnalysis is a Python library to analyze molecular dynamics trajectories.","fork":false,"url":"https://api.github.com/repos/MDAnalysis/mdanalysis","forks_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/forks","keys_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/keys{/key_id}","collaborators_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/teams","hooks_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/hooks","issue_events_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/events{/number}","events_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/events","assignees_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/assignees{/user}","branches_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/branches{/branch}","tags_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/tags","blobs_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/git/refs{/sha}","trees_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/git/trees{/sha}","statuses_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/statuses/{sha}","languages_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/languages","stargazers_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/stargazers","contributors_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/contributors","subscribers_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/subscribers","subscription_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/subscription","commits_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/commits{/sha}","git_commits_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/git/commits{/sha}","comments_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/comments{/number}","issue_comment_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/comments{/number}","contents_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/contents/{+path}","compare_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/compare/{base}...{head}","merges_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/merges","archive_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/downloads","issues_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues{/number}","pulls_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls{/number}","milestones_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/milestones{/number}","notifications_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/labels{/name}","releases_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/releases{/id}","deployments_url":"https://api.github.com/repos/MDAnalysis/mdanalysis/deployments","created_at":"2015-04-04T00:39:41Z","updated_at":"2016-08-10T12:47:38Z","pushed_at":"2016-08-15T18:20:39Z","git_url":"git://github.com/MDAnalysis/mdanalysis.git","ssh_url":"git@github.com:MDAnalysis/mdanalysis.git","clone_url":"https://github.com/MDAnalysis/mdanalysis.git","svn_url":"https://github.com/MDAnalysis/mdanalysis","homepage":"http://www.mdanalysis.org","size":310980,"stargazers_count":77,"watchers_count":77,"language":"Python","has_issues":true,"has_downloads":false,"has_wiki":true,"has_pages":true,"forks_count":57,"mirror_url":null,"open_issues_count":131,"forks":57,"open_issues":131,"watchers":77,"default_branch":"develop"}},"_links":{"self":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934"},"html":{"href":"https://github.com/MDAnalysis/mdanalysis/pull/934"},"issue":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/934"},"comments":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/issues/934/comments"},"review_comments":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934/comments"},"review_comment":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/pulls/934/commits"},"statuses":{"href":"https://api.github.com/repos/MDAnalysis/mdanalysis/statuses/e298633ae4b093ccda1d17af913cc5718bc6c468"}}}}
{"actor":{"display_login":"orbeckst"}}