{"action":"created","issue":{"url":"https://api.github.com/repos/MICommunity/interaction-viewer/issues/103","repository_url":"https://api.github.com/repos/MICommunity/interaction-viewer","labels_url":"https://api.github.com/repos/MICommunity/interaction-viewer/issues/103/labels{/name}","comments_url":"https://api.github.com/repos/MICommunity/interaction-viewer/issues/103/comments","events_url":"https://api.github.com/repos/MICommunity/interaction-viewer/issues/103/events","html_url":"https://github.com/MICommunity/interaction-viewer/issues/103","id":168317698,"number":103,"title":"add symbol for complex","user":{"login":"colin-combe","id":977607,"avatar_url":"https://avatars.githubusercontent.com/u/977607?v=3","gravatar_id":"","url":"https://api.github.com/users/colin-combe","html_url":"https://github.com/colin-combe","followers_url":"https://api.github.com/users/colin-combe/followers","following_url":"https://api.github.com/users/colin-combe/following{/other_user}","gists_url":"https://api.github.com/users/colin-combe/gists{/gist_id}","starred_url":"https://api.github.com/users/colin-combe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/colin-combe/subscriptions","organizations_url":"https://api.github.com/users/colin-combe/orgs","repos_url":"https://api.github.com/users/colin-combe/repos","events_url":"https://api.github.com/users/colin-combe/events{/privacy}","received_events_url":"https://api.github.com/users/colin-combe/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":7,"created_at":"2016-07-29T12:50:26Z","updated_at":"2016-08-08T07:14:15Z","closed_at":null,"body":"add a symbol for a complex (i think it was once proposed this symbol should be a hexagon). Clicking the symbol should take you to the complex portal page for that complex.\r\n\r\nThis is somewhat different from #9, issue 9 was about having interactions within interactions (introducing hierarchy). This is just about a new glyph for complexes.\r\n\r\nSandra provided test file, discussed below.   "},"comment":{"url":"https://api.github.com/repos/MICommunity/interaction-viewer/issues/comments/238158554","html_url":"https://github.com/MICommunity/interaction-viewer/issues/103#issuecomment-238158554","issue_url":"https://api.github.com/repos/MICommunity/interaction-viewer/issues/103","id":238158554,"user":{"login":"colin-combe","id":977607,"avatar_url":"https://avatars.githubusercontent.com/u/977607?v=3","gravatar_id":"","url":"https://api.github.com/users/colin-combe","html_url":"https://github.com/colin-combe","followers_url":"https://api.github.com/users/colin-combe/followers","following_url":"https://api.github.com/users/colin-combe/following{/other_user}","gists_url":"https://api.github.com/users/colin-combe/gists{/gist_id}","starred_url":"https://api.github.com/users/colin-combe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/colin-combe/subscriptions","organizations_url":"https://api.github.com/users/colin-combe/orgs","repos_url":"https://api.github.com/users/colin-combe/repos","events_url":"https://api.github.com/users/colin-combe/events{/privacy}","received_events_url":"https://api.github.com/users/colin-combe/received_events","type":"User","site_admin":false},"created_at":"2016-08-08T07:14:15Z","updated_at":"2016-08-08T07:14:15Z","body":"Hi Birgit,\n\nI don't think its necessary to discuss this face to face right now. I \nthink the best way forward with this issue is for me to get on with the \ngrant application, as this is what the grant is partly about.\n\nCol\n\n\nOn 05/08/16 10:45, Birgit wrote:\n>\n> Hi Colin,\n>\n> I had a look at this and, with Max's help, recreated the complex in \n> the Editor, re-exported and it still does the same. Basically, for \n> some reason, JAMI creates a JSON that has the 2 complexes as \n> 'siblings', rather than ignoring the subcomplex for the viewer.\n>\n> What we want to do is to display EBI-11893419 only when we click on \n> the complex symbol. And then we either want to open the subcomplex in \n> a new page or expand the complex to display a complex inside a complex \n> (there are use cases for both options!).\n>\n> I noticed that the interactor list at the top of the file contains the \n> three proteins (and 2 are PRO chains) as interactors, rather than the \n> single protein P05121 (PAI1_human) and the subcomplex (made up of \n> P00750-PRO_0000028351 & P00750-PRO_0000028352) as interactors. Maybe \n> that's where the problem originates?\n>\n> I wasn't planing on coming to the hackathlon in CB next week but if \n> you think it would be useful to look at this face-to-face (since you \n> are here!) I can work from home for the day and cycle in for a time \n> that fits your schedule.\n>\n> I can add another issue for the future: We also know the binding \n> region of one of the subcomplex participants with the single protein \n> but as we can't currently curate that in the Editor (we can't open the \n> participants of the subcomplex to add features) it would be difficult \n> to add to the file, at least not without manual editing!\n>\n> I'm reopening this ticket so it doesn't fall through the cracks!\n>\n> Birgit\n>\n> —\n> You are receiving this because you modified the open/close state.\n> Reply to this email directly, view it on GitHub \n> <https://github.com/MICommunity/interaction-viewer/issues/103#issuecomment-237808896>, \n> or mute the thread \n> <https://github.com/notifications/unsubscribe-auth/AA7qx-haFqCNB-C6zwfSu-iCm0JKHJK8ks5qcwYogaJpZM4JYKPl>.\n>\n\n\nThe University of Edinburgh is a charitable body, registered in\nScotland, with registration number SC005336.\n"}}
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