{"action":"created","issue":{"url":"https://api.github.com/repos/kcakdemir/HiCPlotter/issues/4","repository_url":"https://api.github.com/repos/kcakdemir/HiCPlotter","labels_url":"https://api.github.com/repos/kcakdemir/HiCPlotter/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/kcakdemir/HiCPlotter/issues/4/comments","events_url":"https://api.github.com/repos/kcakdemir/HiCPlotter/issues/4/events","html_url":"https://github.com/kcakdemir/HiCPlotter/issues/4","id":135483758,"number":4,"title":"bedGraph format","user":{"login":"will-NYGC","id":4604217,"avatar_url":"https://avatars.githubusercontent.com/u/4604217?v=3","gravatar_id":"","url":"https://api.github.com/users/will-NYGC","html_url":"https://github.com/will-NYGC","followers_url":"https://api.github.com/users/will-NYGC/followers","following_url":"https://api.github.com/users/will-NYGC/following{/other_user}","gists_url":"https://api.github.com/users/will-NYGC/gists{/gist_id}","starred_url":"https://api.github.com/users/will-NYGC/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/will-NYGC/subscriptions","organizations_url":"https://api.github.com/users/will-NYGC/orgs","repos_url":"https://api.github.com/users/will-NYGC/repos","events_url":"https://api.github.com/users/will-NYGC/events{/privacy}","received_events_url":"https://api.github.com/users/will-NYGC/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":12,"created_at":"2016-02-22T17:25:20Z","updated_at":"2016-02-22T20:51:14Z","closed_at":null,"body":"I'm trying to add bedgraph histogram plots to my HiC matrix plots. I'm trying to use the example data you included in the data directory:\r\ndata/HiC/Human/wgEncodeBroadHistoneK562CtcfStdSig.chr15.bedGraph.gz\r\n\r\nI'm testing on 1Mb matrix data but i'm getting this error:\r\nBedGraph(wgEncodeBroadHistoneGm12878CtcfStdSig.chr15.bedGraph.gz) has some missing values\r\n\r\ndo i need to do any formatting on this? I assumed it would downscale the resolution to fit my window size."},"comment":{"url":"https://api.github.com/repos/kcakdemir/HiCPlotter/issues/comments/187377559","html_url":"https://github.com/kcakdemir/HiCPlotter/issues/4#issuecomment-187377559","issue_url":"https://api.github.com/repos/kcakdemir/HiCPlotter/issues/4","id":187377559,"user":{"login":"kcakdemir","id":10368164,"avatar_url":"https://avatars.githubusercontent.com/u/10368164?v=3","gravatar_id":"","url":"https://api.github.com/users/kcakdemir","html_url":"https://github.com/kcakdemir","followers_url":"https://api.github.com/users/kcakdemir/followers","following_url":"https://api.github.com/users/kcakdemir/following{/other_user}","gists_url":"https://api.github.com/users/kcakdemir/gists{/gist_id}","starred_url":"https://api.github.com/users/kcakdemir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kcakdemir/subscriptions","organizations_url":"https://api.github.com/users/kcakdemir/orgs","repos_url":"https://api.github.com/users/kcakdemir/repos","events_url":"https://api.github.com/users/kcakdemir/events{/privacy}","received_events_url":"https://api.github.com/users/kcakdemir/received_events","type":"User","site_admin":false},"created_at":"2016-02-22T20:51:14Z","updated_at":"2016-02-22T20:51:14Z","body":"Sorry check this one: \r\n\r\npython HiCPlotter.py -f TripleColumn/GSE35156_GSM892306_hESC_HindIII_HiC_replicate.nodup.hic.summary.txt.1000000.matrix -tri 1 -bed TripleColumn/GSE35156_GSM892306_hESC_HindIII_HiC_replicate.nodup.hic.summary.txt.1000000_ord.bed -r 1000000 -o test -chr chr15 -s 0 -e 50 -n X -hist HiCPlotterR/data/HiC/Human/wgEncodeBroadHistoneK562CtcfStdSig.chr15.bedGraph -hl CTCF -hc 143D52"}}