{"push_id":1215679746,"size":3,"distinct_size":3,"ref":"refs/heads/annotationBatch_EVA-335","head":"6cd3735cf561a24ee5434e2cabec09108b728fa8","before":"3ba2f8a80a9798783b2a1c4ae239f128883a5836","commits":[{"sha":"f1d5ea521eb0d0300a4fe454452e39877bce41c1","author":{"name":"jose miguel mut","email":"db3abc647a5cd76409c2174518df2e42b071513a@gmail.com"},"message":"annotation bugfix: item reader reads compressed files properly","distinct":true,"url":"https://api.github.com/repos/EBIvariation/eva-v2/commits/f1d5ea521eb0d0300a4fe454452e39877bce41c1"},{"sha":"461c218f978888d1708765229a7589cde8796512","author":{"name":"jose miguel mut","email":"db3abc647a5cd76409c2174518df2e42b071513a@gmail.com"},"message":"annotationLoadBatch: completed tests\n\nAlso, bufix of a hardcoded collection name in VariantAnnotationMongoItemWriter","distinct":true,"url":"https://api.github.com/repos/EBIvariation/eva-v2/commits/461c218f978888d1708765229a7589cde8796512"},{"sha":"6cd3735cf561a24ee5434e2cabec09108b728fa8","author":{"name":"jose miguel mut","email":"db3abc647a5cd76409c2174518df2e42b071513a@gmail.com"},"message":"annotation: using dynamic flow allows skipping steps\n\nThe AnnotBatch job is built using a flow for each step.\nEach flow uses a decider to skip or include the step.\nThe decider has a pipelineOptions to retrieve whether it must\nskip the step or not.\n\nThe VariantJob still uses the old annotation steps. There's a dedicated\n\"variantAnnotBatchJob\", and the usual skip* work with the new job as well:\n\nskipAnnotGenerateInput=false\nskipAnnotCreate=true\nskipAnnotLoad=true\nwill only call the generateInputBatch step","distinct":true,"url":"https://api.github.com/repos/EBIvariation/eva-v2/commits/6cd3735cf561a24ee5434e2cabec09108b728fa8"}]}
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