{"action":"created","issue":{"url":"https://api.github.com/repos/igvteam/igv/issues/160","repository_url":"https://api.github.com/repos/igvteam/igv","labels_url":"https://api.github.com/repos/igvteam/igv/issues/160/labels{/name}","comments_url":"https://api.github.com/repos/igvteam/igv/issues/160/comments","events_url":"https://api.github.com/repos/igvteam/igv/issues/160/events","html_url":"https://github.com/igvteam/igv/issues/160","id":94387541,"number":160,"title":"Unable to adjust image height via batch script","user":{"login":"birndle","id":7928926,"avatar_url":"https://avatars.githubusercontent.com/u/7928926?v=3","gravatar_id":"","url":"https://api.github.com/users/birndle","html_url":"https://github.com/birndle","followers_url":"https://api.github.com/users/birndle/followers","following_url":"https://api.github.com/users/birndle/following{/other_user}","gists_url":"https://api.github.com/users/birndle/gists{/gist_id}","starred_url":"https://api.github.com/users/birndle/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/birndle/subscriptions","organizations_url":"https://api.github.com/users/birndle/orgs","repos_url":"https://api.github.com/users/birndle/repos","events_url":"https://api.github.com/users/birndle/events{/privacy}","received_events_url":"https://api.github.com/users/birndle/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":10,"created_at":"2015-07-10T20:42:31Z","updated_at":"2016-03-15T13:34:26Z","closed_at":"2016-03-08T20:53:12Z","body":"Hello,\r\n\r\nI'm running IGV with a batch file in order to take many screenshots at once. I would like to increase the height of my screenshots so that I can see more of the reads. I thought maxPanelHeight would do the trick, but it's not working as I expected. It affects which reads I see, but the height of the screenshot remains the same. (see attached images)\r\n\r\nI'm running the following command: java -Xmx1024M -jar ~/bin/igv-2.3.52/igv.jar -b batch\r\nwhere batch is as follows:\r\n\r\nnew\r\ngenome hg19\r\nload test.bam\r\nsnapshotDirectory screenshots\r\ngoto chr12:56679722\r\nmaxPanelHeight 2000\r\nsnapshot shot.png\r\nexit\r\n\r\n![shot_500](https://cloud.githubusercontent.com/assets/7928926/8628594/63d9d364-2722-11e5-967b-3782e10c1557.png)\r\n![shot_2000](https://cloud.githubusercontent.com/assets/7928926/8628595/63da9aba-2722-11e5-8442-081e7b8400ef.png)\r\n\r\nThe first shot is with maxPanelHeight 500, and the second maxPanelHeight 2000. Is this the expected behavior of maxPanelHeight? Or am I correct in assuming that increasing maxPanelHeight should increase the number of viewable reads?"},"comment":{"url":"https://api.github.com/repos/igvteam/igv/issues/comments/196820209","html_url":"https://github.com/igvteam/igv/issues/160#issuecomment-196820209","issue_url":"https://api.github.com/repos/igvteam/igv/issues/160","id":196820209,"user":{"login":"birndle","id":7928926,"avatar_url":"https://avatars.githubusercontent.com/u/7928926?v=3","gravatar_id":"","url":"https://api.github.com/users/birndle","html_url":"https://github.com/birndle","followers_url":"https://api.github.com/users/birndle/followers","following_url":"https://api.github.com/users/birndle/following{/other_user}","gists_url":"https://api.github.com/users/birndle/gists{/gist_id}","starred_url":"https://api.github.com/users/birndle/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/birndle/subscriptions","organizations_url":"https://api.github.com/users/birndle/orgs","repos_url":"https://api.github.com/users/birndle/repos","events_url":"https://api.github.com/users/birndle/events{/privacy}","received_events_url":"https://api.github.com/users/birndle/received_events","type":"User","site_admin":false},"created_at":"2016-03-15T13:34:26Z","updated_at":"2016-03-15T13:34:26Z","body":"Thank you for your response.\n\nOn Tue, Mar 8, 2016 at 3:53 PM, Jim Robinson <notifications@github.com>\nwrote:\n\n> I investigated this. For me, maxPanelHeight 2000 works, max PanelHeight\n> 2000 does not. This is consistent with the code. So I'm closing this in the\n> absence of any problem I can reproduce.\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/igvteam/igv/issues/160#issuecomment-193961563>.\n>\n"}}