{"action":"closed","issue":{"url":"https://api.github.com/repos/genome/genome/issues/1450","repository_url":"https://api.github.com/repos/genome/genome","labels_url":"https://api.github.com/repos/genome/genome/issues/1450/labels{/name}","comments_url":"https://api.github.com/repos/genome/genome/issues/1450/comments","events_url":"https://api.github.com/repos/genome/genome/issues/1450/events","html_url":"https://github.com/genome/genome/issues/1450","id":158779072,"number":1450,"title":"VcfToBed.pm 1-based flag appears broken","user":{"login":"zlskidmore","id":6145692,"avatar_url":"https://avatars.githubusercontent.com/u/6145692?v=3","gravatar_id":"","url":"https://api.github.com/users/zlskidmore","html_url":"https://github.com/zlskidmore","followers_url":"https://api.github.com/users/zlskidmore/followers","following_url":"https://api.github.com/users/zlskidmore/following{/other_user}","gists_url":"https://api.github.com/users/zlskidmore/gists{/gist_id}","starred_url":"https://api.github.com/users/zlskidmore/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/zlskidmore/subscriptions","organizations_url":"https://api.github.com/users/zlskidmore/orgs","repos_url":"https://api.github.com/users/zlskidmore/repos","events_url":"https://api.github.com/users/zlskidmore/events{/privacy}","received_events_url":"https://api.github.com/users/zlskidmore/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-06-06T21:26:52Z","updated_at":"2016-12-05T18:32:24Z","closed_at":"2016-12-05T18:32:24Z","body":"Hi, using `gmt bed convert vcf-to-bed --one-based` flag appears to still ouput 0-based coordinates:\n\ninput:\n9       34795908        .       CT      C       .       . \n\nexample output:\n9       34795908        34795909        T/\\*     -       -\n\nshould be:\n9       34795909       34795909        T/\\*     -       -\n"}}
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