{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/2221","repository_url":"https://api.github.com/repos/broadinstitute/gatk","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2221/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2221/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2221/events","html_url":"https://github.com/broadinstitute/gatk/issues/2221","id":184290789,"number":2221,"title":"VariantRecalibrator should throw an error when an annotation is specified twice","user":{"login":"chandrans","id":6998669,"avatar_url":"https://avatars.githubusercontent.com/u/6998669?v=3","gravatar_id":"","url":"https://api.github.com/users/chandrans","html_url":"https://github.com/chandrans","followers_url":"https://api.github.com/users/chandrans/followers","following_url":"https://api.github.com/users/chandrans/following{/other_user}","gists_url":"https://api.github.com/users/chandrans/gists{/gist_id}","starred_url":"https://api.github.com/users/chandrans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chandrans/subscriptions","organizations_url":"https://api.github.com/users/chandrans/orgs","repos_url":"https://api.github.com/users/chandrans/repos","events_url":"https://api.github.com/users/chandrans/events{/privacy}","received_events_url":"https://api.github.com/users/chandrans/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-10-20T17:24:33Z","updated_at":"2016-10-24T15:44:26Z","closed_at":null,"body":"## Feature request\r\n\r\n### Tool(s) involved\r\n\r\nVariantRecalibrator\r\n\r\n### Description\r\n\r\nA user reported he gets an `##### ERROR MESSAGE: No data found.` from VariantRecalibrator when running with -an MQ twice. There should be a check for this and an error message letting the user know he/she has specified the same annotation twice. \r\n\r\n[Original Forum Post](http://gatkforums.broadinstitute.org/gatk/discussion/comment/33592#Comment_33592)\r\n\r\n----\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments/255779037","html_url":"https://github.com/broadinstitute/gatk/issues/2221#issuecomment-255779037","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2221","id":255779037,"user":{"login":"chandrans","id":6998669,"avatar_url":"https://avatars.githubusercontent.com/u/6998669?v=3","gravatar_id":"","url":"https://api.github.com/users/chandrans","html_url":"https://github.com/chandrans","followers_url":"https://api.github.com/users/chandrans/followers","following_url":"https://api.github.com/users/chandrans/following{/other_user}","gists_url":"https://api.github.com/users/chandrans/gists{/gist_id}","starred_url":"https://api.github.com/users/chandrans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chandrans/subscriptions","organizations_url":"https://api.github.com/users/chandrans/orgs","repos_url":"https://api.github.com/users/chandrans/repos","events_url":"https://api.github.com/users/chandrans/events{/privacy}","received_events_url":"https://api.github.com/users/chandrans/received_events","type":"User","site_admin":false},"created_at":"2016-10-24T15:44:26Z","updated_at":"2016-10-24T15:44:26Z","body":"No. Can I use /humgen/gsa-hpprojects/GATK/gatk4/gatk4-latest/gatk-protected.jar to test it?"}}
{"actor":{"display_login":"chandrans"}}