{"action":"created","issue":{"url":"https://api.github.com/repos/nipy/nipype/issues/1379","repository_url":"https://api.github.com/repos/nipy/nipype","labels_url":"https://api.github.com/repos/nipy/nipype/issues/1379/labels{/name}","comments_url":"https://api.github.com/repos/nipy/nipype/issues/1379/comments","events_url":"https://api.github.com/repos/nipy/nipype/issues/1379/events","html_url":"https://github.com/nipy/nipype/pull/1379","id":137309741,"number":1379,"title":"ENH: Specify motion parameter source in modelgen","user":{"login":"effigies","id":83442,"avatar_url":"https://avatars.githubusercontent.com/u/83442?v=3","gravatar_id":"","url":"https://api.github.com/users/effigies","html_url":"https://github.com/effigies","followers_url":"https://api.github.com/users/effigies/followers","following_url":"https://api.github.com/users/effigies/following{/other_user}","gists_url":"https://api.github.com/users/effigies/gists{/gist_id}","starred_url":"https://api.github.com/users/effigies/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/effigies/subscriptions","organizations_url":"https://api.github.com/users/effigies/orgs","repos_url":"https://api.github.com/users/effigies/repos","events_url":"https://api.github.com/users/effigies/events{/privacy}","received_events_url":"https://api.github.com/users/effigies/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2016-02-29T16:59:51Z","updated_at":"2016-04-07T00:59:01Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/nipy/nipype/pulls/1379","html_url":"https://github.com/nipy/nipype/pull/1379","diff_url":"https://github.com/nipy/nipype/pull/1379.diff","patch_url":"https://github.com/nipy/nipype/pull/1379.patch"},"body":"This change adds an optional `parameter_source` input to the `SpecifyModel` classes, with the same options as available in [`ArtifactDetect`](https://github.com/nipy/nipype/blob/master/nipype/algorithms/rapidart.py#L163-L165), though only `FSFAST` causes any change from default behavior.\r\n\r\nPer #706 and https://groups.google.com/d/msg/nipy-user/QzmvYr7x9B4/F30k7sET5lQJ, FSFAST motion parameters are in columns 1-6 (zero-indexed).\r\n\r\nThe default behavior is changed to choosing the first 6 columns of a parameter file, since the assumption appears to be rotation and translation parameters. Though it might be preferable to restore the old default, which is to take as many columns as are found."},"comment":{"url":"https://api.github.com/repos/nipy/nipype/issues/comments/206639571","html_url":"https://github.com/nipy/nipype/pull/1379#issuecomment-206639571","issue_url":"https://api.github.com/repos/nipy/nipype/issues/1379","id":206639571,"user":{"login":"coveralls","id":2354108,"avatar_url":"https://avatars.githubusercontent.com/u/2354108?v=3","gravatar_id":"","url":"https://api.github.com/users/coveralls","html_url":"https://github.com/coveralls","followers_url":"https://api.github.com/users/coveralls/followers","following_url":"https://api.github.com/users/coveralls/following{/other_user}","gists_url":"https://api.github.com/users/coveralls/gists{/gist_id}","starred_url":"https://api.github.com/users/coveralls/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/coveralls/subscriptions","organizations_url":"https://api.github.com/users/coveralls/orgs","repos_url":"https://api.github.com/users/coveralls/repos","events_url":"https://api.github.com/users/coveralls/events{/privacy}","received_events_url":"https://api.github.com/users/coveralls/received_events","type":"User","site_admin":false},"created_at":"2016-04-07T00:59:01Z","updated_at":"2016-04-07T00:59:01Z","body":"\n[![Coverage Status](https://coveralls.io/builds/5693009/badge)](https://coveralls.io/builds/5693009)\n\nCoverage increased (+0.007%) to 72.544% when pulling **7fe723f3a865c1097fe712e7fc276998ef24a424 on effigies:param_source** into **28c9473412d3a9402a3179915b07174f42bdaebe on nipy:master**.\n"}}