{"action":"opened","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/1805","repository_url":"https://api.github.com/repos/broadinstitute/gatk","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1805/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1805/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/1805/events","html_url":"https://github.com/broadinstitute/gatk/issues/1805","id":153141649,"number":1805,"title":"Why SGA, the currently used assembler for SV pipeline, generates slightly diff results on different runs.","user":{"login":"SHuang-Broad","id":16310888,"avatar_url":"https://avatars.githubusercontent.com/u/16310888?v=3","gravatar_id":"","url":"https://api.github.com/users/SHuang-Broad","html_url":"https://github.com/SHuang-Broad","followers_url":"https://api.github.com/users/SHuang-Broad/followers","following_url":"https://api.github.com/users/SHuang-Broad/following{/other_user}","gists_url":"https://api.github.com/users/SHuang-Broad/gists{/gist_id}","starred_url":"https://api.github.com/users/SHuang-Broad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SHuang-Broad/subscriptions","organizations_url":"https://api.github.com/users/SHuang-Broad/orgs","repos_url":"https://api.github.com/users/SHuang-Broad/repos","events_url":"https://api.github.com/users/SHuang-Broad/events{/privacy}","received_events_url":"https://api.github.com/users/SHuang-Broad/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"SHuang-Broad","id":16310888,"avatar_url":"https://avatars.githubusercontent.com/u/16310888?v=3","gravatar_id":"","url":"https://api.github.com/users/SHuang-Broad","html_url":"https://github.com/SHuang-Broad","followers_url":"https://api.github.com/users/SHuang-Broad/followers","following_url":"https://api.github.com/users/SHuang-Broad/following{/other_user}","gists_url":"https://api.github.com/users/SHuang-Broad/gists{/gist_id}","starred_url":"https://api.github.com/users/SHuang-Broad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SHuang-Broad/subscriptions","organizations_url":"https://api.github.com/users/SHuang-Broad/orgs","repos_url":"https://api.github.com/users/SHuang-Broad/repos","events_url":"https://api.github.com/users/SHuang-Broad/events{/privacy}","received_events_url":"https://api.github.com/users/SHuang-Broad/received_events","type":"User","site_admin":false},"milestone":null,"comments":0,"created_at":"2016-05-04T23:53:27Z","updated_at":"2016-05-04T23:53:27Z","closed_at":null,"body":"SGA, when run with exactly the same parameters on the same machine, \r\nyields slightly different results\r\n * \"SNP\" between the contigs, or\r\n * slightly different assembled contig lengths"}}