{"action":"created","issue":{"url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy/issues/2","repository_url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy","labels_url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy/issues/2/comments","events_url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy/issues/2/events","html_url":"https://github.com/PF2-pasteur-fr/SARTools-Galaxy/issues/2","id":191979368,"number":2,"title":"Error when running Sartools Deseq2 through galaxy","user":{"login":"inestiouiri","id":15051266,"avatar_url":"https://avatars.githubusercontent.com/u/15051266?v=3","gravatar_id":"","url":"https://api.github.com/users/inestiouiri","html_url":"https://github.com/inestiouiri","followers_url":"https://api.github.com/users/inestiouiri/followers","following_url":"https://api.github.com/users/inestiouiri/following{/other_user}","gists_url":"https://api.github.com/users/inestiouiri/gists{/gist_id}","starred_url":"https://api.github.com/users/inestiouiri/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/inestiouiri/subscriptions","organizations_url":"https://api.github.com/users/inestiouiri/orgs","repos_url":"https://api.github.com/users/inestiouiri/repos","events_url":"https://api.github.com/users/inestiouiri/events{/privacy}","received_events_url":"https://api.github.com/users/inestiouiri/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":13,"created_at":"2016-11-28T11:15:11Z","updated_at":"2016-12-01T10:20:42Z","closed_at":null,"body":"Hi all ,\r\nI'm running sartools deseq2 on my local galaxy instance and here is what i got. Help me please\r\n![galaxy sartools](https://cloud.githubusercontent.com/assets/15051266/20666350/116abbda-b564-11e6-808b-d8d979a89e09.png)\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy/issues/comments/264134544","html_url":"https://github.com/PF2-pasteur-fr/SARTools-Galaxy/issues/2#issuecomment-264134544","issue_url":"https://api.github.com/repos/PF2-pasteur-fr/SARTools-Galaxy/issues/2","id":264134544,"user":{"login":"inestiouiri","id":15051266,"avatar_url":"https://avatars.githubusercontent.com/u/15051266?v=3","gravatar_id":"","url":"https://api.github.com/users/inestiouiri","html_url":"https://github.com/inestiouiri","followers_url":"https://api.github.com/users/inestiouiri/followers","following_url":"https://api.github.com/users/inestiouiri/following{/other_user}","gists_url":"https://api.github.com/users/inestiouiri/gists{/gist_id}","starred_url":"https://api.github.com/users/inestiouiri/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/inestiouiri/subscriptions","organizations_url":"https://api.github.com/users/inestiouiri/orgs","repos_url":"https://api.github.com/users/inestiouiri/repos","events_url":"https://api.github.com/users/inestiouiri/events{/privacy}","received_events_url":"https://api.github.com/users/inestiouiri/received_events","type":"User","site_admin":false},"created_at":"2016-12-01T10:20:42Z","updated_at":"2016-12-01T10:20:42Z","body":"    Welcome to SARTools version 1.3.2.\r\n    R template scripts are available on GitHub.\r\n    ----------------------------------------------\r\n[1] \"All the parameters are correct\"\r\nTarget file:\r\n    label         files group\r\nWT1   WT1 WT1.htseq.out    WT\r\nWT2   WT2 WT2.htseq.out    WT\r\nKO1   KO1 KO1.htseq.out    KO\r\nKO2   KO2 KO2.htseq.out    KO\r\nLoading files:\r\nWT1.htseq.out: 8222 rows and 183 null count(s)\r\nWT2.htseq.out: 8222 rows and 193 null count(s)\r\nKO1.htseq.out: 8222 rows and 210 null count(s)\r\nKO2.htseq.out: 8222 rows and 193 null count(s)\r\n\r\nFeatures removed:\r\nalignment_not_unique\r\nambiguous\r\nno_feature\r\nnot_aligned\r\ntoo_low_aQual\r\n\r\nTop of the counts matrix:\r\n           WT1  WT2 KO1  KO2\r\nfeat0001  2728 1636 668 2378\r\nfeat0002  3169 1892 376 1228\r\nfeat0003  2784 1626 622 2117\r\nfeat0004  6311 4283 374 1470\r\nfeat0005 12769 9132 718 3199\r\nfeat0006  3953 2867 666 2579\r\n\r\nBottom of the counts matrix:\r\n         WT1 WT2 KO1 KO2\r\nfeat8212   0   0   0   0\r\nfeat8213   1   0   0   1\r\nfeat8214   0   2   0   1\r\nfeat8215  15  14   5   5\r\nfeat8216  45  49  13  27\r\nfeat8217   1   0   0   0\r\nError in title(...) :\r\n  X11 font -adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*, face 5 at size 12 could not be loaded\r\nCalls: descriptionPlots ... plot.density -> plot.default -> localTitle -> title\r\nExecution halted    \r\n:o "}}
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