{"action":"created","issue":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1288","repository_url":"https://api.github.com/repos/bigdatagenomics/adam","labels_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1288/labels{/name}","comments_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1288/comments","events_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1288/events","html_url":"https://github.com/bigdatagenomics/adam/pull/1288","id":191216759,"number":1288,"title":"Clean rewrite of VariantContextConverter","user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2016-11-23T09:01:09Z","updated_at":"2016-12-09T06:56:58Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/bigdatagenomics/adam/pulls/1288","html_url":"https://github.com/bigdatagenomics/adam/pull/1288","diff_url":"https://github.com/bigdatagenomics/adam/pull/1288.diff","patch_url":"https://github.com/bigdatagenomics/adam/pull/1288.patch"},"body":"Resolves #1107:\r\n\r\n* Clean rewrite of VariantContextConverter. Now, there's a conversion function per field, pretty much, and the conversion process is pretty much pure functional, which is kinda cool!\r\n* Adds support for arbitrary attributes as defined in the header lines.\r\n* Supports all of the fields in the schema except for those slated to be dropped in https://github.com/bigdatagenomics/bdg-formats/pull/108.\r\n* Added 58 tests! w00t!\r\n\r\nAlso see https://github.com/samtools/htsjdk/issues/751."},"comment":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/comments/265946933","html_url":"https://github.com/bigdatagenomics/adam/pull/1288#issuecomment-265946933","issue_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/1288","id":265946933,"user":{"login":"AmplabJenkins","id":4031291,"avatar_url":"https://avatars.githubusercontent.com/u/4031291?v=3","gravatar_id":"","url":"https://api.github.com/users/AmplabJenkins","html_url":"https://github.com/AmplabJenkins","followers_url":"https://api.github.com/users/AmplabJenkins/followers","following_url":"https://api.github.com/users/AmplabJenkins/following{/other_user}","gists_url":"https://api.github.com/users/AmplabJenkins/gists{/gist_id}","starred_url":"https://api.github.com/users/AmplabJenkins/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AmplabJenkins/subscriptions","organizations_url":"https://api.github.com/users/AmplabJenkins/orgs","repos_url":"https://api.github.com/users/AmplabJenkins/repos","events_url":"https://api.github.com/users/AmplabJenkins/events{/privacy}","received_events_url":"https://api.github.com/users/AmplabJenkins/received_events","type":"User","site_admin":false},"created_at":"2016-12-09T06:56:58Z","updated_at":"2016-12-09T06:56:58Z","body":"Test FAILed.\nRefer to this link for build results (access rights to CI server needed): \nhttps://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1669/<h2>Build result: FAILURE</span></h2>[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git --version # timeout=10 > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15 > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > /home/jenkins/git2/bin/git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > /home/jenkins/git2/bin/git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > /home/jenkins/git2/bin/git -c core.askpass=true fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15 > /home/jenkins/git2/bin/git rev-parse c9567a1027559d79b9d4acc8c6464a693d59f913^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains c9567a1027559d79b9d4acc8c6464a693d59f913 # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1288/head^{commit} # timeout=10Checking out Revision c9567a1027559d79b9d4acc8c6464a693d59f913 (origin/pr/1288/head) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f c9567a1027559d79b9d4acc8c6464a693d59f913First time build. Skipping changelog.Triggering ADAM-prb ? 2.6.0,2.11,1.5.2,centosTriggering ADAM-prb ? 2.6.0,2.10,1.5.2,centosTouchstone configurations resulted in FAILURE, so aborting...Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'\nTest FAILed."}}
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