{"action":"created","issue":{"url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/issues/138","repository_url":"https://api.github.com/repos/BD2KGenomics/toil-scripts","labels_url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/issues/138/labels{/name}","comments_url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/issues/138/comments","events_url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/issues/138/events","html_url":"https://github.com/BD2KGenomics/toil-scripts/pull/138","id":138266918,"number":138,"title":"Make launching Spark cluster via service jobs optional","user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/labels/in%20progress","name":"in progress","color":"ededed"},{"url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/labels/needs%20work","name":"needs work","color":"e11d21"},{"url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/labels/spark/adam","name":"spark/adam","color":"bfd4f2"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-03-03T18:58:36Z","updated_at":"2016-03-03T19:25:57Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/pulls/138","html_url":"https://github.com/BD2KGenomics/toil-scripts/pull/138","diff_url":"https://github.com/BD2KGenomics/toil-scripts/pull/138.diff","patch_url":"https://github.com/BD2KGenomics/toil-scripts/pull/138.patch"},"body":"Resolves #137:\r\n\r\n* Moves Spark cluster setup into `toil_scripts.spark_utils` package.\r\n* Reorganizes ADAM pipeline to use a static declaration, and allows user to pass a known Spark master IP. If the master IP is passed in, Spark cluster provisioning is skipped.\r\n* Renames ADAM module to have a more descriptive name.\r\n* Miscellaneous logging cleanup.\r\n\r\nSince these changes are fairly large, I've put a `needs work` tag on this while I test it. This builds upon #136."},"comment":{"url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/issues/comments/191925189","html_url":"https://github.com/BD2KGenomics/toil-scripts/pull/138#issuecomment-191925189","issue_url":"https://api.github.com/repos/BD2KGenomics/toil-scripts/issues/138","id":191925189,"user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"created_at":"2016-03-03T19:25:57Z","updated_at":"2016-03-03T19:25:57Z","body":"Rebased after #136 merged."}}