{"action":"created","issue":{"url":"https://api.github.com/repos/clulab/reach/issues/435","repository_url":"https://api.github.com/repos/clulab/reach","labels_url":"https://api.github.com/repos/clulab/reach/issues/435/labels{/name}","comments_url":"https://api.github.com/repos/clulab/reach/issues/435/comments","events_url":"https://api.github.com/repos/clulab/reach/issues/435/events","html_url":"https://github.com/clulab/reach/issues/435","id":187190010,"number":435,"title":"Include event triggers in tabular output","user":{"login":"myedibleenso","id":1137472,"avatar_url":"https://avatars.githubusercontent.com/u/1137472?v=3","gravatar_id":"","url":"https://api.github.com/users/myedibleenso","html_url":"https://github.com/myedibleenso","followers_url":"https://api.github.com/users/myedibleenso/followers","following_url":"https://api.github.com/users/myedibleenso/following{/other_user}","gists_url":"https://api.github.com/users/myedibleenso/gists{/gist_id}","starred_url":"https://api.github.com/users/myedibleenso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/myedibleenso/subscriptions","organizations_url":"https://api.github.com/users/myedibleenso/orgs","repos_url":"https://api.github.com/users/myedibleenso/repos","events_url":"https://api.github.com/users/myedibleenso/events{/privacy}","received_events_url":"https://api.github.com/users/myedibleenso/received_events","type":"User","site_admin":false},"labels":[{"id":318369162,"url":"https://api.github.com/repos/clulab/reach/labels/assembly","name":"assembly","color":"d4c5f9","default":false},{"id":376775091,"url":"https://api.github.com/repos/clulab/reach/labels/export","name":"export","color":"e99695","default":false}],"state":"open","locked":false,"assignee":{"login":"myedibleenso","id":1137472,"avatar_url":"https://avatars.githubusercontent.com/u/1137472?v=3","gravatar_id":"","url":"https://api.github.com/users/myedibleenso","html_url":"https://github.com/myedibleenso","followers_url":"https://api.github.com/users/myedibleenso/followers","following_url":"https://api.github.com/users/myedibleenso/following{/other_user}","gists_url":"https://api.github.com/users/myedibleenso/gists{/gist_id}","starred_url":"https://api.github.com/users/myedibleenso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/myedibleenso/subscriptions","organizations_url":"https://api.github.com/users/myedibleenso/orgs","repos_url":"https://api.github.com/users/myedibleenso/repos","events_url":"https://api.github.com/users/myedibleenso/events{/privacy}","received_events_url":"https://api.github.com/users/myedibleenso/received_events","type":"User","site_admin":false},"assignees":[{"login":"myedibleenso","id":1137472,"avatar_url":"https://avatars.githubusercontent.com/u/1137472?v=3","gravatar_id":"","url":"https://api.github.com/users/myedibleenso","html_url":"https://github.com/myedibleenso","followers_url":"https://api.github.com/users/myedibleenso/followers","following_url":"https://api.github.com/users/myedibleenso/following{/other_user}","gists_url":"https://api.github.com/users/myedibleenso/gists{/gist_id}","starred_url":"https://api.github.com/users/myedibleenso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/myedibleenso/subscriptions","organizations_url":"https://api.github.com/users/myedibleenso/orgs","repos_url":"https://api.github.com/users/myedibleenso/repos","events_url":"https://api.github.com/users/myedibleenso/events{/privacy}","received_events_url":"https://api.github.com/users/myedibleenso/received_events","type":"User","site_admin":false}],"milestone":null,"comments":3,"created_at":"2016-11-03T21:04:48Z","updated_at":"2016-11-04T02:28:37Z","closed_at":null,"body":"Based on today's conversation with CMU, we'll add a new column to the output that lists the lemmatized triggers for the evidence associated with each row.  We'll sort these event triggers by their frequency.  This will be used for analysis of regulations with the aim of eventually developing a subtype of regulations that model increase/decrease effects."},"comment":{"url":"https://api.github.com/repos/clulab/reach/issues/comments/258329766","html_url":"https://github.com/clulab/reach/issues/435#issuecomment-258329766","issue_url":"https://api.github.com/repos/clulab/reach/issues/435","id":258329766,"user":{"login":"cl4yton","id":5446973,"avatar_url":"https://avatars.githubusercontent.com/u/5446973?v=3","gravatar_id":"","url":"https://api.github.com/users/cl4yton","html_url":"https://github.com/cl4yton","followers_url":"https://api.github.com/users/cl4yton/followers","following_url":"https://api.github.com/users/cl4yton/following{/other_user}","gists_url":"https://api.github.com/users/cl4yton/gists{/gist_id}","starred_url":"https://api.github.com/users/cl4yton/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cl4yton/subscriptions","organizations_url":"https://api.github.com/users/cl4yton/orgs","repos_url":"https://api.github.com/users/cl4yton/repos","events_url":"https://api.github.com/users/cl4yton/events{/privacy}","received_events_url":"https://api.github.com/users/cl4yton/received_events","type":"User","site_admin":false},"created_at":"2016-11-04T02:28:37Z","updated_at":"2016-11-04T02:28:37Z","body":"Yes, this does make sense.  Please keep be abreast of what is going on\nhere, and if possible, I'd like to be a part of any discussions on this,\nincluding with CMU -- it's essential to the work we're doing on assembly.\n\n\nOn Thu, Nov 3, 2016 at 7:06 PM, Gus Hahn-Powell <notifications@github.com>\nwrote:\n\n> Sorry, Clay. That was mostly a note for myself on what we agreed to\n> provide CMU.\n>\n> Natasa mentioned today that her group is only interested in a subset of\n> the regulations that we are reporting (@MihaiSurdeanu\n> <https://github.com/MihaiSurdeanu> has a nice example of this).\n>\n> Basically there are a number of \"non-essential\" regulations that are not\n> causal. We sometimes see these in the form of [A increases the [positive\n> regulation of C by B]] where the outer regulation is not considered to be\n> strictly causal.\n>\n> Right now it is hard for Natasa's group to tease apart these two types of\n> regulations from our output without looking at how they are discussed in\n> text. We're already providing evidence for each row in the tabular output\n> format; however, we are not including event triggers. Natasa's group has\n> offered to analyze these triggers and identify the subset (and contextual\n> clues) that denote a \"non-essential\" regulation. At some point in the\n> future, after this analysis has been done, we will modify our regulation\n> grammars and event taxonomy to reflect this distinction.\n>\n> It sounds like you're saying this could be used as a proxy for evidence\n> strength\n>\n> The inclusion of these triggers wasn't intended to do that exactly, though\n> you may find this information useful for doing so. On that note, we can\n> already serialize the mentions extracted for a paper to json. The json\n> includes all of these gritty details (trigger, syntactic paths connecting\n> args and triggers, etc).\n>\n> I don't follow the logic of counting trigger frequency to then informing\n> modeling increase/decrease\n> effects.\n>\n> The inclusion of triggers is simply to help Natasa's group get started\n> differentiating the causal v. non-causal regulations. We decided to sort by\n> frequency as a kind of proxy to relevance.\n>\n> Does all that make more sense?\n>\n> —\n> You are receiving this because you commented.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/clulab/reach/issues/435#issuecomment-258327214>, or mute\n> the thread\n> <https://github.com/notifications/unsubscribe-auth/AFMdPQ4N7ap2jd5qxEPx7nLwtGLuO-HOks5q6pNDgaJpZM4Ko6mC>\n> .\n>\n\n\n\n-- \nClayton T. Morrison\nAssociate Professor\nSchool of Information\nUniversity of Arizona\nweb: http://w3.sista.arizona.edu/~clayton/\nemail: claytonm@email.arizona.edu\noffice: 520-621-6609\n"}}
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