{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/schemas/issues/633","repository_url":"https://api.github.com/repos/ga4gh/schemas","labels_url":"https://api.github.com/repos/ga4gh/schemas/issues/633/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/schemas/issues/633/comments","events_url":"https://api.github.com/repos/ga4gh/schemas/issues/633/events","html_url":"https://github.com/ga4gh/schemas/issues/633","id":160307521,"number":633,"title":"Sequence Annotation search by external identifiers","user":{"login":"macieksmuga","id":6685511,"avatar_url":"https://avatars.githubusercontent.com/u/6685511?v=3","gravatar_id":"","url":"https://api.github.com/users/macieksmuga","html_url":"https://github.com/macieksmuga","followers_url":"https://api.github.com/users/macieksmuga/followers","following_url":"https://api.github.com/users/macieksmuga/following{/other_user}","gists_url":"https://api.github.com/users/macieksmuga/gists{/gist_id}","starred_url":"https://api.github.com/users/macieksmuga/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/macieksmuga/subscriptions","organizations_url":"https://api.github.com/users/macieksmuga/orgs","repos_url":"https://api.github.com/users/macieksmuga/repos","events_url":"https://api.github.com/users/macieksmuga/events{/privacy}","received_events_url":"https://api.github.com/users/macieksmuga/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-06-14T23:27:04Z","updated_at":"2016-06-17T16:38:06Z","closed_at":null,"body":"As seen in proposed usage patterns in the upcoming G2P endpoints (https://github.com/ohsu-computational-biology/schemas/blob/apichanges/doc/source/api/proposed_schema_changes.md) as well as the pending RNA API PR #630, there is a clear need for the `features/search` endpoint to support searching by feature names, or rather, by external identifiers (such as HUGO gene names, rs IDs, Ensembl IDs, etc.). \r\n\r\nIn the case of G2P, such an extension would negate the need for a separate endpoint, `genotypes/search` to effectively do the same as the above proposal. In the case of RNA, it would allow for importing RNA data with correct feature ID associations per expression level.\r\n\r\nHere's a proposed change to the `Feature` schema and associated search endpoint to address this issue:\r\nhttps://gist.github.com/david4096/8ade1883089bede01ed18168ec489ba8"},"comment":{"url":"https://api.github.com/repos/ga4gh/schemas/issues/comments/226818585","html_url":"https://github.com/ga4gh/schemas/issues/633#issuecomment-226818585","issue_url":"https://api.github.com/repos/ga4gh/schemas/issues/633","id":226818585,"user":{"login":"diekhans","id":110053,"avatar_url":"https://avatars.githubusercontent.com/u/110053?v=3","gravatar_id":"","url":"https://api.github.com/users/diekhans","html_url":"https://github.com/diekhans","followers_url":"https://api.github.com/users/diekhans/followers","following_url":"https://api.github.com/users/diekhans/following{/other_user}","gists_url":"https://api.github.com/users/diekhans/gists{/gist_id}","starred_url":"https://api.github.com/users/diekhans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/diekhans/subscriptions","organizations_url":"https://api.github.com/users/diekhans/orgs","repos_url":"https://api.github.com/users/diekhans/repos","events_url":"https://api.github.com/users/diekhans/events{/privacy}","received_events_url":"https://api.github.com/users/diekhans/received_events","type":"User","site_admin":false},"created_at":"2016-06-17T16:38:06Z","updated_at":"2016-06-17T16:38:06Z","body":"I don't understand In [53] in the proposal.  What does \"synthesis with other data sets to be progressive.\" mean?  What is a \"federation of shared knowledge\"?"}}
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