{"action":"opened","number":10,"pull_request":{"url":"https://api.github.com/repos/johnrsibert/tagest/pulls/10","id":93910261,"html_url":"https://github.com/johnrsibert/tagest/pull/10","diff_url":"https://github.com/johnrsibert/tagest/pull/10.diff","patch_url":"https://github.com/johnrsibert/tagest/pull/10.patch","issue_url":"https://api.github.com/repos/johnrsibert/tagest/issues/10","number":10,"state":"open","locked":false,"title":"merge in rdensitysim","user":{"login":"tom-peatman","id":12636617,"avatar_url":"https://avatars.githubusercontent.com/u/12636617?v=3","gravatar_id":"","url":"https://api.github.com/users/tom-peatman","html_url":"https://github.com/tom-peatman","followers_url":"https://api.github.com/users/tom-peatman/followers","following_url":"https://api.github.com/users/tom-peatman/following{/other_user}","gists_url":"https://api.github.com/users/tom-peatman/gists{/gist_id}","starred_url":"https://api.github.com/users/tom-peatman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tom-peatman/subscriptions","organizations_url":"https://api.github.com/users/tom-peatman/orgs","repos_url":"https://api.github.com/users/tom-peatman/repos","events_url":"https://api.github.com/users/tom-peatman/events{/privacy}","received_events_url":"https://api.github.com/users/tom-peatman/received_events","type":"User","site_admin":false},"body":"Hi John,\r\n\r\nI think I've followed the process that we agreed in Honolulu. I've forked your repository, included code for rdensitysim, and now issuing the pull request.\r\n\r\nThere are 2 commits.  I removed the hard-coded correction of tag releases in one, and added in rdensitysim in the other.\r\n\r\nI based rdensitysim on rhalflife. It tracks tag density within eez's (or polygons defined in eez.dat), and calculates halflives. Initial tag density can be provided, based on distributions from SEAPODYM (or other sources). Calculations are repeated with tag densities in a particular eez set to zero (in turn), to provide a means for exploring connectivity between regions.\r\n\r\nIncidentally, it looks like rhalflife calculates the time for densities to decrease to 50 % of the density in the second time-step of simulations, not the first (at least, I got this impression while developing rdensitysim). I will have a look at this tomorrow and can issue a pull request for that separately (if needed).\r\n\r\nThanks,\r\nTom ","created_at":"2016-11-16T06:47:06Z","updated_at":"2016-11-16T06:47:06Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/johnrsibert/tagest/pulls/10/commits","review_comments_url":"https://api.github.com/repos/johnrsibert/tagest/pulls/10/comments","review_comment_url":"https://api.github.com/repos/johnrsibert/tagest/pulls/comments{/number}","comments_url":"https://api.github.com/repos/johnrsibert/tagest/issues/10/comments","statuses_url":"https://api.github.com/repos/johnrsibert/tagest/statuses/a9698e735e1998378e3d807247c12368a6b06562","head":{"label":"tom-peatman:master","ref":"master","sha":"a9698e735e1998378e3d807247c12368a6b06562","user":{"login":"tom-peatman","id":12636617,"avatar_url":"https://avatars.githubusercontent.com/u/12636617?v=3","gravatar_id":"","url":"https://api.github.com/users/tom-peatman","html_url":"https://github.com/tom-peatman","followers_url":"https://api.github.com/users/tom-peatman/followers","following_url":"https://api.github.com/users/tom-peatman/following{/other_user}","gists_url":"https://api.github.com/users/tom-peatman/gists{/gist_id}","starred_url":"https://api.github.com/users/tom-peatman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tom-peatman/subscriptions","organizations_url":"https://api.github.com/users/tom-peatman/orgs","repos_url":"https://api.github.com/users/tom-peatman/repos","events_url":"https://api.github.com/users/tom-peatman/events{/privacy}","received_events_url":"https://api.github.com/users/tom-peatman/received_events","type":"User","site_admin":false},"repo":{"id":73869046,"name":"tagest","full_name":"tom-peatman/tagest","owner":{"login":"tom-peatman","id":12636617,"avatar_url":"https://avatars.githubusercontent.com/u/12636617?v=3","gravatar_id":"","url":"https://api.github.com/users/tom-peatman","html_url":"https://github.com/tom-peatman","followers_url":"https://api.github.com/users/tom-peatman/followers","following_url":"https://api.github.com/users/tom-peatman/following{/other_user}","gists_url":"https://api.github.com/users/tom-peatman/gists{/gist_id}","starred_url":"https://api.github.com/users/tom-peatman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tom-peatman/subscriptions","organizations_url":"https://api.github.com/users/tom-peatman/orgs","repos_url":"https://api.github.com/users/tom-peatman/repos","events_url":"https://api.github.com/users/tom-peatman/events{/privacy}","received_events_url":"https://api.github.com/users/tom-peatman/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/tom-peatman/tagest","description":"Suite of software for spatially resolved fish tagging analysis","fork":true,"url":"https://api.github.com/repos/tom-peatman/tagest","forks_url":"https://api.github.com/repos/tom-peatman/tagest/forks","keys_url":"https://api.github.com/repos/tom-peatman/tagest/keys{/key_id}","collaborators_url":"https://api.github.com/repos/tom-peatman/tagest/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/tom-peatman/tagest/teams","hooks_url":"https://api.github.com/repos/tom-peatman/tagest/hooks","issue_events_url":"https://api.github.com/repos/tom-peatman/tagest/issues/events{/number}","events_url":"https://api.github.com/repos/tom-peatman/tagest/events","assignees_url":"https://api.github.com/repos/tom-peatman/tagest/assignees{/user}","branches_url":"https://api.github.com/repos/tom-peatman/tagest/branches{/branch}","tags_url":"https://api.github.com/repos/tom-peatman/tagest/tags","blobs_url":"https://api.github.com/repos/tom-peatman/tagest/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/tom-peatman/tagest/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/tom-peatman/tagest/git/refs{/sha}","trees_url":"https://api.github.com/repos/tom-peatman/tagest/git/trees{/sha}","statuses_url":"https://api.github.com/repos/tom-peatman/tagest/statuses/{sha}","languages_url":"https://api.github.com/repos/tom-peatman/tagest/languages","stargazers_url":"https://api.github.com/repos/tom-peatman/tagest/stargazers","contributors_url":"https://api.github.com/repos/tom-peatman/tagest/contributors","subscribers_url":"https://api.github.com/repos/tom-peatman/tagest/subscribers","subscription_url":"https://api.github.com/repos/tom-peatman/tagest/subscription","commits_url":"https://api.github.com/repos/tom-peatman/tagest/commits{/sha}","git_commits_url":"https://api.github.com/repos/tom-peatman/tagest/git/commits{/sha}","comments_url":"https://api.github.com/repos/tom-peatman/tagest/comments{/number}","issue_comment_url":"https://api.github.com/repos/tom-peatman/tagest/issues/comments{/number}","contents_url":"https://api.github.com/repos/tom-peatman/tagest/contents/{+path}","compare_url":"https://api.github.com/repos/tom-peatman/tagest/compare/{base}...{head}","merges_url":"https://api.github.com/repos/tom-peatman/tagest/merges","archive_url":"https://api.github.com/repos/tom-peatman/tagest/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/tom-peatman/tagest/downloads","issues_url":"https://api.github.com/repos/tom-peatman/tagest/issues{/number}","pulls_url":"https://api.github.com/repos/tom-peatman/tagest/pulls{/number}","milestones_url":"https://api.github.com/repos/tom-peatman/tagest/milestones{/number}","notifications_url":"https://api.github.com/repos/tom-peatman/tagest/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/tom-peatman/tagest/labels{/name}","releases_url":"https://api.github.com/repos/tom-peatman/tagest/releases{/id}","deployments_url":"https://api.github.com/repos/tom-peatman/tagest/deployments","created_at":"2016-11-16T00:52:22Z","updated_at":"2016-11-16T00:52:31Z","pushed_at":"2016-11-16T06:24:53Z","git_url":"git://github.com/tom-peatman/tagest.git","ssh_url":"git@github.com:tom-peatman/tagest.git","clone_url":"https://github.com/tom-peatman/tagest.git","svn_url":"https://github.com/tom-peatman/tagest","homepage":null,"size":8192,"stargazers_count":0,"watchers_count":0,"language":"C++","has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"johnrsibert:master","ref":"master","sha":"6b3e5c3283b1bbf68218ab417ee23bd34b226219","user":{"login":"johnrsibert","id":5440370,"avatar_url":"https://avatars.githubusercontent.com/u/5440370?v=3","gravatar_id":"","url":"https://api.github.com/users/johnrsibert","html_url":"https://github.com/johnrsibert","followers_url":"https://api.github.com/users/johnrsibert/followers","following_url":"https://api.github.com/users/johnrsibert/following{/other_user}","gists_url":"https://api.github.com/users/johnrsibert/gists{/gist_id}","starred_url":"https://api.github.com/users/johnrsibert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/johnrsibert/subscriptions","organizations_url":"https://api.github.com/users/johnrsibert/orgs","repos_url":"https://api.github.com/users/johnrsibert/repos","events_url":"https://api.github.com/users/johnrsibert/events{/privacy}","received_events_url":"https://api.github.com/users/johnrsibert/received_events","type":"User","site_admin":false},"repo":{"id":30438830,"name":"tagest","full_name":"johnrsibert/tagest","owner":{"login":"johnrsibert","id":5440370,"avatar_url":"https://avatars.githubusercontent.com/u/5440370?v=3","gravatar_id":"","url":"https://api.github.com/users/johnrsibert","html_url":"https://github.com/johnrsibert","followers_url":"https://api.github.com/users/johnrsibert/followers","following_url":"https://api.github.com/users/johnrsibert/following{/other_user}","gists_url":"https://api.github.com/users/johnrsibert/gists{/gist_id}","starred_url":"https://api.github.com/users/johnrsibert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/johnrsibert/subscriptions","organizations_url":"https://api.github.com/users/johnrsibert/orgs","repos_url":"https://api.github.com/users/johnrsibert/repos","events_url":"https://api.github.com/users/johnrsibert/events{/privacy}","received_events_url":"https://api.github.com/users/johnrsibert/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/johnrsibert/tagest","description":"Suite of software for spatially resolved fish tagging analysis","fork":false,"url":"https://api.github.com/repos/johnrsibert/tagest","forks_url":"https://api.github.com/repos/johnrsibert/tagest/forks","keys_url":"https://api.github.com/repos/johnrsibert/tagest/keys{/key_id}","collaborators_url":"https://api.github.com/repos/johnrsibert/tagest/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/johnrsibert/tagest/teams","hooks_url":"https://api.github.com/repos/johnrsibert/tagest/hooks","issue_events_url":"https://api.github.com/repos/johnrsibert/tagest/issues/events{/number}","events_url":"https://api.github.com/repos/johnrsibert/tagest/events","assignees_url":"https://api.github.com/repos/johnrsibert/tagest/assignees{/user}","branches_url":"https://api.github.com/repos/johnrsibert/tagest/branches{/branch}","tags_url":"https://api.github.com/repos/johnrsibert/tagest/tags","blobs_url":"https://api.github.com/repos/johnrsibert/tagest/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/johnrsibert/tagest/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/johnrsibert/tagest/git/refs{/sha}","trees_url":"https://api.github.com/repos/johnrsibert/tagest/git/trees{/sha}","statuses_url":"https://api.github.com/repos/johnrsibert/tagest/statuses/{sha}","languages_url":"https://api.github.com/repos/johnrsibert/tagest/languages","stargazers_url":"https://api.github.com/repos/johnrsibert/tagest/stargazers","contributors_url":"https://api.github.com/repos/johnrsibert/tagest/contributors","subscribers_url":"https://api.github.com/repos/johnrsibert/tagest/subscribers","subscription_url":"https://api.github.com/repos/johnrsibert/tagest/subscription","commits_url":"https://api.github.com/repos/johnrsibert/tagest/commits{/sha}","git_commits_url":"https://api.github.com/repos/johnrsibert/tagest/git/commits{/sha}","comments_url":"https://api.github.com/repos/johnrsibert/tagest/comments{/number}","issue_comment_url":"https://api.github.com/repos/johnrsibert/tagest/issues/comments{/number}","contents_url":"https://api.github.com/repos/johnrsibert/tagest/contents/{+path}","compare_url":"https://api.github.com/repos/johnrsibert/tagest/compare/{base}...{head}","merges_url":"https://api.github.com/repos/johnrsibert/tagest/merges","archive_url":"https://api.github.com/repos/johnrsibert/tagest/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/johnrsibert/tagest/downloads","issues_url":"https://api.github.com/repos/johnrsibert/tagest/issues{/number}","pulls_url":"https://api.github.com/repos/johnrsibert/tagest/pulls{/number}","milestones_url":"https://api.github.com/repos/johnrsibert/tagest/milestones{/number}","notifications_url":"https://api.github.com/repos/johnrsibert/tagest/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/johnrsibert/tagest/labels{/name}","releases_url":"https://api.github.com/repos/johnrsibert/tagest/releases{/id}","deployments_url":"https://api.github.com/repos/johnrsibert/tagest/deployments","created_at":"2015-02-07T00:05:30Z","updated_at":"2016-08-06T01:33:33Z","pushed_at":"2016-11-16T06:47:06Z","git_url":"git://github.com/johnrsibert/tagest.git","ssh_url":"git@github.com:johnrsibert/tagest.git","clone_url":"https://github.com/johnrsibert/tagest.git","svn_url":"https://github.com/johnrsibert/tagest","homepage":null,"size":8192,"stargazers_count":3,"watchers_count":3,"language":"C++","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":1,"mirror_url":null,"open_issues_count":7,"forks":1,"open_issues":7,"watchers":3,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/johnrsibert/tagest/pulls/10"},"html":{"href":"https://github.com/johnrsibert/tagest/pull/10"},"issue":{"href":"https://api.github.com/repos/johnrsibert/tagest/issues/10"},"comments":{"href":"https://api.github.com/repos/johnrsibert/tagest/issues/10/comments"},"review_comments":{"href":"https://api.github.com/repos/johnrsibert/tagest/pulls/10/comments"},"review_comment":{"href":"https://api.github.com/repos/johnrsibert/tagest/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/johnrsibert/tagest/pulls/10/commits"},"statuses":{"href":"https://api.github.com/repos/johnrsibert/tagest/statuses/a9698e735e1998378e3d807247c12368a6b06562"}},"merged":false,"mergeable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"commits":2,"additions":675,"deletions":1,"changed_files":7}}
{"actor":{"display_login":"tom-peatman"}}