{"action":"created","issue":{"url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks/issues/14","repository_url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks","labels_url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks/issues/14/labels{/name}","comments_url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks/issues/14/comments","events_url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks/issues/14/events","html_url":"https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/14","id":172379015,"number":14,"title":"Problem Downloading Clinical Data","user":{"login":"kvougas","id":11699147,"avatar_url":"https://avatars.githubusercontent.com/u/11699147?v=3","gravatar_id":"","url":"https://api.github.com/users/kvougas","html_url":"https://github.com/kvougas","followers_url":"https://api.github.com/users/kvougas/followers","following_url":"https://api.github.com/users/kvougas/following{/other_user}","gists_url":"https://api.github.com/users/kvougas/gists{/gist_id}","starred_url":"https://api.github.com/users/kvougas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kvougas/subscriptions","organizations_url":"https://api.github.com/users/kvougas/orgs","repos_url":"https://api.github.com/users/kvougas/repos","events_url":"https://api.github.com/users/kvougas/events{/privacy}","received_events_url":"https://api.github.com/users/kvougas/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-08-22T06:37:17Z","updated_at":"2016-08-22T16:13:52Z","closed_at":null,"body":"When I ran the following:\r\n`query <- GDCquery(project = \"TCGA-OV\", data.category = \"Clinical\")\r\nGDCdownload(query,directory = \"~/Projects/GDC/Clinical\")`\r\n\r\nI got the following error:\r\n\r\n**Accessing GDC. This might take a while...\r\nGDCdownload will download: 31.370846 MB compressed in a tar.gz file\r\nDownloading as: Mon_Aug_22_09_22_25_2016.tar.gz\r\n  |======================================================================================| 100%\r\n/bin/tar: This does not look like a tar archive\r\n\r\ngzip: stdin: not in gzip format\r\n/bin/tar: Child returned status 1\r\n/bin/tar: Error is not recoverable: exiting now\r\n[1] 2\r\nError in GDCdownload(query, directory = \"~/Projects/GDC/Clinical\") : \r\n  There was an error in the download process, please execute it again\r\nIn addition: Warning message:\r\nIn untar(name) :\r\n  ‘/bin/tar -xf 'Mon_Aug_22_09_22_25_2016.tar.gz'’ returned error code 2**\r\n\r\n\r\n\r\nThe same error is also generated with:\r\n\"TCGA-LGG\" & \"TCGA-LIHC\"\r\n"},"comment":{"url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks/issues/comments/241465130","html_url":"https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/14#issuecomment-241465130","issue_url":"https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinks/issues/14","id":241465130,"user":{"login":"tiagochst","id":145529,"avatar_url":"https://avatars.githubusercontent.com/u/145529?v=3","gravatar_id":"","url":"https://api.github.com/users/tiagochst","html_url":"https://github.com/tiagochst","followers_url":"https://api.github.com/users/tiagochst/followers","following_url":"https://api.github.com/users/tiagochst/following{/other_user}","gists_url":"https://api.github.com/users/tiagochst/gists{/gist_id}","starred_url":"https://api.github.com/users/tiagochst/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tiagochst/subscriptions","organizations_url":"https://api.github.com/users/tiagochst/orgs","repos_url":"https://api.github.com/users/tiagochst/repos","events_url":"https://api.github.com/users/tiagochst/events{/privacy}","received_events_url":"https://api.github.com/users/tiagochst/received_events","type":"User","site_admin":false},"created_at":"2016-08-22T16:13:52Z","updated_at":"2016-08-22T16:13:52Z","body":"Hi,\r\n\r\nI was able to run the code, could you send me your sessionInfo(), also, could you try to run \r\n `query <- GDCquery(project = \"TCGA-OV\", data.category = \"Clinical\")\r\n  GDCdownload(query)`\r\nMaybe it is related to the ~, but it is working in linux.\r\n\r\n![screenshot from 2016-08-22 13-15-08](https://cloud.githubusercontent.com/assets/145529/17862122/426b8652-686a-11e6-9b91-4b77caadde0d.png)\r\n\r\n"}}
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