{"action":"created","issue":{"url":"https://api.github.com/repos/genome/arvados_trial/issues/45","repository_url":"https://api.github.com/repos/genome/arvados_trial","labels_url":"https://api.github.com/repos/genome/arvados_trial/issues/45/labels{/name}","comments_url":"https://api.github.com/repos/genome/arvados_trial/issues/45/comments","events_url":"https://api.github.com/repos/genome/arvados_trial/issues/45/events","html_url":"https://github.com/genome/arvados_trial/issues/45","id":194119185,"number":45,"title":"Add synonyms input","user":{"login":"jasonwalker80","id":884229,"avatar_url":"https://avatars.githubusercontent.com/u/884229?v=3","gravatar_id":"","url":"https://api.github.com/users/jasonwalker80","html_url":"https://github.com/jasonwalker80","followers_url":"https://api.github.com/users/jasonwalker80/followers","following_url":"https://api.github.com/users/jasonwalker80/following{/other_user}","gists_url":"https://api.github.com/users/jasonwalker80/gists{/gist_id}","starred_url":"https://api.github.com/users/jasonwalker80/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jasonwalker80/subscriptions","organizations_url":"https://api.github.com/users/jasonwalker80/orgs","repos_url":"https://api.github.com/users/jasonwalker80/repos","events_url":"https://api.github.com/users/jasonwalker80/events{/privacy}","received_events_url":"https://api.github.com/users/jasonwalker80/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-12-07T17:50:22Z","updated_at":"2016-12-08T15:45:00Z","closed_at":null,"body":"Define a synonyms input file to map chromosome names between GRCh38DH and Ensembl."},"comment":{"url":"https://api.github.com/repos/genome/arvados_trial/issues/comments/265772323","html_url":"https://github.com/genome/arvados_trial/issues/45#issuecomment-265772323","issue_url":"https://api.github.com/repos/genome/arvados_trial/issues/45","id":265772323,"user":{"login":"jasonwalker80","id":884229,"avatar_url":"https://avatars.githubusercontent.com/u/884229?v=3","gravatar_id":"","url":"https://api.github.com/users/jasonwalker80","html_url":"https://github.com/jasonwalker80","followers_url":"https://api.github.com/users/jasonwalker80/followers","following_url":"https://api.github.com/users/jasonwalker80/following{/other_user}","gists_url":"https://api.github.com/users/jasonwalker80/gists{/gist_id}","starred_url":"https://api.github.com/users/jasonwalker80/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jasonwalker80/subscriptions","organizations_url":"https://api.github.com/users/jasonwalker80/orgs","repos_url":"https://api.github.com/users/jasonwalker80/repos","events_url":"https://api.github.com/users/jasonwalker80/events{/privacy}","received_events_url":"https://api.github.com/users/jasonwalker80/received_events","type":"User","site_admin":false},"created_at":"2016-12-08T15:45:00Z","updated_at":"2016-12-08T15:45:00Z","body":"This file should work for synonyms:\r\n`wget --no-check-certificate http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/chromAlias.txt.gz`\r\n\r\nWe should probably grep for 'ensembl' instead of providing all synonyms/aliases."}}
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