{"action":"created","issue":{"url":"https://api.github.com/repos/tseemann/prokka/issues/196","repository_url":"https://api.github.com/repos/tseemann/prokka","labels_url":"https://api.github.com/repos/tseemann/prokka/issues/196/labels{/name}","comments_url":"https://api.github.com/repos/tseemann/prokka/issues/196/comments","events_url":"https://api.github.com/repos/tseemann/prokka/issues/196/events","html_url":"https://github.com/tseemann/prokka/issues/196","id":182004287,"number":196,"title":"SignalP version error","user":{"login":"TreeT2","id":20044679,"avatar_url":"https://avatars.githubusercontent.com/u/20044679?v=3","gravatar_id":"","url":"https://api.github.com/users/TreeT2","html_url":"https://github.com/TreeT2","followers_url":"https://api.github.com/users/TreeT2/followers","following_url":"https://api.github.com/users/TreeT2/following{/other_user}","gists_url":"https://api.github.com/users/TreeT2/gists{/gist_id}","starred_url":"https://api.github.com/users/TreeT2/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TreeT2/subscriptions","organizations_url":"https://api.github.com/users/TreeT2/orgs","repos_url":"https://api.github.com/users/TreeT2/repos","events_url":"https://api.github.com/users/TreeT2/events{/privacy}","received_events_url":"https://api.github.com/users/TreeT2/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/tseemann/prokka/labels/mystery","name":"mystery","color":"fbca04"}],"state":"open","locked":false,"assignee":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"assignees":[{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2016-10-10T12:37:39Z","updated_at":"2016-10-23T08:06:22Z","closed_at":null,"body":"Hi All,\r\nI have been using prokka on a HPC system for a few months now with no issue (via a pbs script). I recently installed signalP v4.1 as instructed and added the executable path to the .bashrc file. Now when I run prokka I get the following error msg:  \r\n![image](https://cloud.githubusercontent.com/assets/20044679/19236173/fad59cb0-8eed-11e6-9dbf-6e92a3ad3bab.png)\r\n\r\nIf I run prokka locally without the pbs script it runs no problem, signalP and the version is detected. \r\nNot sure what the issue is.\r\nThanks\r\nLynda"},"comment":{"url":"https://api.github.com/repos/tseemann/prokka/issues/comments/255575093","html_url":"https://github.com/tseemann/prokka/issues/196#issuecomment-255575093","issue_url":"https://api.github.com/repos/tseemann/prokka/issues/196","id":255575093,"user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"created_at":"2016-10-23T08:06:22Z","updated_at":"2016-10-23T08:06:22Z","body":"The command I run to check the version is:\r\n```\r\n\"signalp -v < /dev/null 2>&1 | egrep ',|# SignalP' | sed 's/^# SignalP-//'\",\r\n```\r\n\r\nIf you run that on the head node, what does it print?\r\n"}}
{"actor":{"display_login":"tseemann"}}