{"action":"created","comment":{"url":"https://api.github.com/repos/PecanProject/pecan/pulls/comments/56175493","id":56175493,"diff_hunk":"@@ -24,31 +26,38 @@ library(PEcAn.visualization)\n \n #---------------- Load PEcAn settings file. -------------------------------------------------------#\n # Open and read in settings file for PEcAn run.\n-settings <- read.settings(\"~/demo.sda/demo.xml\")\n+settings <- read.settings(\"/fs/data2/output//PEcAn_1000001249/pecan.xml\")\n #--------------------------------------------------------------------------------------------------#\n \n #---------------- Load plot and tree ring data. -------------------------------------------------------#\n status.start(\"LOAD DATA\")\n ## Read tree data\n-trees <- read.csv(\"/home/carya/Camp2014/ForestPlots/treecores2014.csv\")\n+trees <- read.csv(\"/home/araiho/Camp2014/ForestPlots/treecores2014.csv\")\n \n ## Read tree ring data\n-rings <- Read_Tuscon(\"/home/carya/Camp2014/ForestPlots/Tucson/\")\n+source(\"/home/araiho/Camp2014/statsR/Read_Tuscon.R\")","path":"scripts/workflow.treering.R","position":25,"original_position":25,"commit_id":"24205c8b5ba029066588870da677e4285d3b24df","original_commit_id":"24205c8b5ba029066588870da677e4285d3b24df","user":{"login":"araiho","id":3520982,"avatar_url":"https://avatars.githubusercontent.com/u/3520982?v=3","gravatar_id":"","url":"https://api.github.com/users/araiho","html_url":"https://github.com/araiho","followers_url":"https://api.github.com/users/araiho/followers","following_url":"https://api.github.com/users/araiho/following{/other_user}","gists_url":"https://api.github.com/users/araiho/gists{/gist_id}","starred_url":"https://api.github.com/users/araiho/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/araiho/subscriptions","organizations_url":"https://api.github.com/users/araiho/orgs","repos_url":"https://api.github.com/users/araiho/repos","events_url":"https://api.github.com/users/araiho/events{/privacy}","received_events_url":"https://api.github.com/users/araiho/received_events","type":"User","site_admin":false},"body":"Sounds good. I'll check for them. ","created_at":"2016-03-15T14:50:35Z","updated_at":"2016-03-15T14:50:35Z","html_url":"https://github.com/PecanProject/pecan/pull/740#discussion_r56175493","pull_request_url":"https://api.github.com/repos/PecanProject/pecan/pulls/740","_links":{"self":{"href":"https://api.github.com/repos/PecanProject/pecan/pulls/comments/56175493"},"html":{"href":"https://github.com/PecanProject/pecan/pull/740#discussion_r56175493"},"pull_request":{"href":"https://api.github.com/repos/PecanProject/pecan/pulls/740"}}},"pull_request":{"url":"https://api.github.com/repos/PecanProject/pecan/pulls/740","id":61306089,"html_url":"https://github.com/PecanProject/pecan/pull/740","diff_url":"https://github.com/PecanProject/pecan/pull/740.diff","patch_url":"https://github.com/PecanProject/pecan/pull/740.patch","issue_url":"https://api.github.com/repos/PecanProject/pecan/issues/740","number":740,"state":"open","locked":false,"title":"Adding Multivariate State and Process Variance to the Ensemble Kalman Filter","user":{"login":"araiho","id":3520982,"avatar_url":"https://avatars.githubusercontent.com/u/3520982?v=3","gravatar_id":"","url":"https://api.github.com/users/araiho","html_url":"https://github.com/araiho","followers_url":"https://api.github.com/users/araiho/followers","following_url":"https://api.github.com/users/araiho/following{/other_user}","gists_url":"https://api.github.com/users/araiho/gists{/gist_id}","starred_url":"https://api.github.com/users/araiho/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/araiho/subscriptions","organizations_url":"https://api.github.com/users/araiho/orgs","repos_url":"https://api.github.com/users/araiho/repos","events_url":"https://api.github.com/users/araiho/events{/privacy}","received_events_url":"https://api.github.com/users/araiho/received_events","type":"User","site_admin":false},"body":"This pull request is the beginning of generalizing the EnKF code. I changed the EnKF code to allow for more than one state variable. @mdietze and I also added a way for process variance to be estimated. I also added more diagnostic plots. Currently, this only works for LINKAGES. But it works with biomass estimated from tree rings of four species. I also had to make some changes to the treering workflow to get level species biomass.\r\n\r\n@bcow is up to review --> :b: :cow:  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