{"action":"created","issue":{"url":"https://api.github.com/repos/monarch-initiative/monarch-app/issues/1232","repository_url":"https://api.github.com/repos/monarch-initiative/monarch-app","labels_url":"https://api.github.com/repos/monarch-initiative/monarch-app/issues/1232/labels{/name}","comments_url":"https://api.github.com/repos/monarch-initiative/monarch-app/issues/1232/comments","events_url":"https://api.github.com/repos/monarch-initiative/monarch-app/issues/1232/events","html_url":"https://github.com/monarch-initiative/monarch-app/issues/1232","id":147939320,"number":1232,"title":"Some inferred phenotypes look weird (Flies with writer's cramp)","user":{"login":"jmcmurry","id":3658863,"avatar_url":"https://avatars.githubusercontent.com/u/3658863?v=3","gravatar_id":"","url":"https://api.github.com/users/jmcmurry","html_url":"https://github.com/jmcmurry","followers_url":"https://api.github.com/users/jmcmurry/followers","following_url":"https://api.github.com/users/jmcmurry/following{/other_user}","gists_url":"https://api.github.com/users/jmcmurry/gists{/gist_id}","starred_url":"https://api.github.com/users/jmcmurry/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jmcmurry/subscriptions","organizations_url":"https://api.github.com/users/jmcmurry/orgs","repos_url":"https://api.github.com/users/jmcmurry/repos","events_url":"https://api.github.com/users/jmcmurry/events{/privacy}","received_events_url":"https://api.github.com/users/jmcmurry/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/monarch-initiative/monarch-app/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"TomConlin","id":1911895,"avatar_url":"https://avatars.githubusercontent.com/u/1911895?v=3","gravatar_id":"","url":"https://api.github.com/users/TomConlin","html_url":"https://github.com/TomConlin","followers_url":"https://api.github.com/users/TomConlin/followers","following_url":"https://api.github.com/users/TomConlin/following{/other_user}","gists_url":"https://api.github.com/users/TomConlin/gists{/gist_id}","starred_url":"https://api.github.com/users/TomConlin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomConlin/subscriptions","organizations_url":"https://api.github.com/users/TomConlin/orgs","repos_url":"https://api.github.com/users/TomConlin/repos","events_url":"https://api.github.com/users/TomConlin/events{/privacy}","received_events_url":"https://api.github.com/users/TomConlin/received_events","type":"User","site_admin":false},"milestone":null,"comments":2,"created_at":"2016-04-13T03:50:46Z","updated_at":"2016-04-13T17:18:01Z","closed_at":null,"body":"The phenotype profile for [an HSP fly gene](https://monarchinitiative.org/gene/NCBIGene:32133#phenotypes) has an inferred association with \"writer's cramp\"; however, the lack of any transparent basis for the inference makes statements like these look especially weird.\r\n\r\nMoreover, the only human homolog listed for the gene is heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa); however, [this homolog isn't associated with \"writer's cramp\" either.](https://monarchinitiative.org/gene/NCBIGene:3309). I realize that HSPs are a bit of a special case, but our results should nevertheless not confuse people. Perhaps this phenotype is inferred from a homology that is not visible from the fly gene homologs page?\r\n\r\n@TomConlin perhaps you could investigate where this result originates? Not sure if it is dipper, scigraph, owlsim, ontologies, or my own fundamental lack of understanding. "},"comment":{"url":"https://api.github.com/repos/monarch-initiative/monarch-app/issues/comments/209551482","html_url":"https://github.com/monarch-initiative/monarch-app/issues/1232#issuecomment-209551482","issue_url":"https://api.github.com/repos/monarch-initiative/monarch-app/issues/1232","id":209551482,"user":{"login":"TomConlin","id":1911895,"avatar_url":"https://avatars.githubusercontent.com/u/1911895?v=3","gravatar_id":"","url":"https://api.github.com/users/TomConlin","html_url":"https://github.com/TomConlin","followers_url":"https://api.github.com/users/TomConlin/followers","following_url":"https://api.github.com/users/TomConlin/following{/other_user}","gists_url":"https://api.github.com/users/TomConlin/gists{/gist_id}","starred_url":"https://api.github.com/users/TomConlin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomConlin/subscriptions","organizations_url":"https://api.github.com/users/TomConlin/orgs","repos_url":"https://api.github.com/users/TomConlin/repos","events_url":"https://api.github.com/users/TomConlin/events{/privacy}","received_events_url":"https://api.github.com/users/TomConlin/received_events","type":"User","site_admin":false},"created_at":"2016-04-13T17:18:00Z","updated_at":"2016-04-13T17:18:00Z","body":"Neither ```NCBIGene:32133```  nor  ```HP:0002356``` exist directly in the triples produced by my run of the dipper script last night.  \r\n\r\nJenkins says the last successful flybase ingest was Feb 9, 2016\r\n\r\nThe triples in http://data.monarchinitiative.org/ttl/\r\nare dated:  \r\n```\r\nflybase.nt                                         17-Oct-2015 01:47          3057877576\r\nflybase.ttl                                        25-Aug-2015 05:07          1226398584\r\nflybase_dataset.nt                                 17-Oct-2015 01:34                1142\r\nflybase_dataset.ttl                                17-Oct-2015 00:40                 734\r\nflybase_test.ttl                                   17-Oct-2015 00:41             3594184\r\n```\r\n"}}