{"action":"created","issue":{"url":"https://api.github.com/repos/samtools/htsjdk/issues/232","repository_url":"https://api.github.com/repos/samtools/htsjdk","labels_url":"https://api.github.com/repos/samtools/htsjdk/issues/232/labels{/name}","comments_url":"https://api.github.com/repos/samtools/htsjdk/issues/232/comments","events_url":"https://api.github.com/repos/samtools/htsjdk/issues/232/events","html_url":"https://github.com/samtools/htsjdk/pull/232","id":71982161,"number":232,"title":"Adding the ability to output the SAM flag field in various formats,","user":{"login":"nh13","id":846274,"avatar_url":"https://avatars.githubusercontent.com/u/846274?v=3","gravatar_id":"","url":"https://api.github.com/users/nh13","html_url":"https://github.com/nh13","followers_url":"https://api.github.com/users/nh13/followers","following_url":"https://api.github.com/users/nh13/following{/other_user}","gists_url":"https://api.github.com/users/nh13/gists{/gist_id}","starred_url":"https://api.github.com/users/nh13/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nh13/subscriptions","organizations_url":"https://api.github.com/users/nh13/orgs","repos_url":"https://api.github.com/users/nh13/repos","events_url":"https://api.github.com/users/nh13/events{/privacy}","received_events_url":"https://api.github.com/users/nh13/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/samtools/htsjdk/labels/1%20-%20Ready","name":"1 - Ready","color":"CCCCCC"},{"url":"https://api.github.com/repos/samtools/htsjdk/labels/dev","name":"dev","color":"009800"},{"url":"https://api.github.com/repos/samtools/htsjdk/labels/Review-party%20candidate","name":"Review-party candidate","color":"5319e7"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":44,"created_at":"2015-04-29T20:31:36Z","updated_at":"2016-06-10T04:35:30Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/samtools/htsjdk/pulls/232","html_url":"https://github.com/samtools/htsjdk/pull/232","diff_url":"https://github.com/samtools/htsjdk/pull/232.diff","patch_url":"https://github.com/samtools/htsjdk/pull/232.patch"},"body":"similar to the 'samtools view -X' option.  Use the FLAG_FIELDS_OUTPUT\r\nwithin the Defaults class to set this.\r\n\r\n<!---\r\n@huboard:{\"order\":90.5,\"milestone_order\":232,\"custom_state\":\"\"}\n-->\n\n<!-- Reviewable:start -->\n[<img src=\"https://reviewable.io/review_button.svg\" height=\"40\" alt=\"Review on Reviewable\"/>](https://reviewable.io/reviews/samtools/htsjdk/232)\n<!-- Reviewable:end -->\n"},"comment":{"url":"https://api.github.com/repos/samtools/htsjdk/issues/comments/225091128","html_url":"https://github.com/samtools/htsjdk/pull/232#issuecomment-225091128","issue_url":"https://api.github.com/repos/samtools/htsjdk/issues/232","id":225091128,"user":{"login":"yfarjoun","id":2745554,"avatar_url":"https://avatars.githubusercontent.com/u/2745554?v=3","gravatar_id":"","url":"https://api.github.com/users/yfarjoun","html_url":"https://github.com/yfarjoun","followers_url":"https://api.github.com/users/yfarjoun/followers","following_url":"https://api.github.com/users/yfarjoun/following{/other_user}","gists_url":"https://api.github.com/users/yfarjoun/gists{/gist_id}","starred_url":"https://api.github.com/users/yfarjoun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yfarjoun/subscriptions","organizations_url":"https://api.github.com/users/yfarjoun/orgs","repos_url":"https://api.github.com/users/yfarjoun/repos","events_url":"https://api.github.com/users/yfarjoun/events{/privacy}","received_events_url":"https://api.github.com/users/yfarjoun/received_events","type":"User","site_admin":false},"created_at":"2016-06-10T04:35:30Z","updated_at":"2016-06-10T04:35:30Z","body":"@jmarshall from the cpp code\r\n```cpp\r\n case 'q':  value |= QUALITY_FAILED;  break;\r\n```\r\ndo we want the htsjdk and the samtools version to be different?"}}
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