{"action":"created","issue":{"url":"https://api.github.com/repos/pombase/pombase-chado/issues/595","repository_url":"https://api.github.com/repos/pombase/pombase-chado","labels_url":"https://api.github.com/repos/pombase/pombase-chado/issues/595/labels{/name}","comments_url":"https://api.github.com/repos/pombase/pombase-chado/issues/595/comments","events_url":"https://api.github.com/repos/pombase/pombase-chado/issues/595/events","html_url":"https://github.com/pombase/pombase-chado/issues/595","id":184276303,"number":595,"title":"Canto GO annotations missing from GAF?","user":{"login":"mah11","id":5196259,"avatar_url":"https://avatars.githubusercontent.com/u/5196259?v=3","gravatar_id":"","url":"https://api.github.com/users/mah11","html_url":"https://github.com/mah11","followers_url":"https://api.github.com/users/mah11/followers","following_url":"https://api.github.com/users/mah11/following{/other_user}","gists_url":"https://api.github.com/users/mah11/gists{/gist_id}","starred_url":"https://api.github.com/users/mah11/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mah11/subscriptions","organizations_url":"https://api.github.com/users/mah11/orgs","repos_url":"https://api.github.com/users/mah11/repos","events_url":"https://api.github.com/users/mah11/events{/privacy}","received_events_url":"https://api.github.com/users/mah11/received_events","type":"User","site_admin":false},"labels":[{"id":60268188,"url":"https://api.github.com/repos/pombase/pombase-chado/labels/bug","name":"bug","color":"fc2929","default":true},{"id":233754660,"url":"https://api.github.com/repos/pombase/pombase-chado/labels/GAF%20export","name":"GAF export","color":"bdede0","default":false},{"id":233751417,"url":"https://api.github.com/repos/pombase/pombase-chado/labels/high%20priority","name":"high priority","color":"eb6420","default":false}],"state":"open","locked":false,"assignee":{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars.githubusercontent.com/u/90474?v=3","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"assignees":[{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars.githubusercontent.com/u/90474?v=3","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false}],"milestone":null,"comments":1,"created_at":"2016-10-20T16:20:54Z","updated_at":"2016-10-29T16:43:02Z","closed_at":null,"body":"The GAF shrunk abruptly between pombase-build-2016-09-15 and pombase-build-2016-09-18 builds:\r\n\r\n\tpombase-build-2016-09-11-v1.gaf.gz\t2016-09-12 12:10\t783K\t [v61 release]\r\n\tpombase-build-2016-09-15-v1.gaf.gz\t2016-09-16 12:42\t782K\t \r\n\tpombase-build-2016-09-18-v1.gaf.gz\t2016-09-19 15:54\t570K\t \r\n\tpombase-build-2016-10-17-v1.gaf.gz\t2016-10-19 08:46\t636K\t [latest build as of ticket opening]\r\n\r\nI noticed because annotations from PMID:15226425/d2288b20e67eb62d aren't in the latest GAF. Spot-checking a couple of other randomly chosen sessions, and a look at the latest gaf-load-output log, raises the ugly possibility that GO annotations aren't getting loaded from Canto. It doesn't look like a general Canto problem, though because the PHAFs have stayed at consistent sizes.\r\n\r\nI added 'high priority' because something's going wrong, but I suppose you could change that because it'll be ages before the next release."},"comment":{"url":"https://api.github.com/repos/pombase/pombase-chado/issues/comments/257101961","html_url":"https://github.com/pombase/pombase-chado/issues/595#issuecomment-257101961","issue_url":"https://api.github.com/repos/pombase/pombase-chado/issues/595","id":257101961,"user":{"login":"ValWood","id":7359272,"avatar_url":"https://avatars.githubusercontent.com/u/7359272?v=3","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"created_at":"2016-10-29T16:43:02Z","updated_at":"2016-10-29T16:43:02Z","body":"According to the current logs and GAF its the IEA data that isn't loading?\r\nThe Canto numbers look slightly higher in the logs.\r\nIf this is the case, this should get fixed when \r\nhttps://github.com/pombase/pombase-chado/issues/594\r\nis implemented"}}
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