{"push_id":1250289866,"size":14,"distinct_size":14,"ref":"refs/heads/je_SAMTextIteratorFix_681","head":"247250278418191ee8a4d862275fb55b48774705","before":"ab453e07f10b429205fad1edb08b3e9a8f9854d4","commits":[{"sha":"6141de3e8885cb3491fef598db19bdf342a94060","author":{"name":"bbimber","email":"18c903b5fb6107be82f4c48d8895b94a3a9bc5c5@gmail.com"},"message":"support genotype filters in Genotype.getAnyAttribute() and hasAnyAttribute\n\nadd unit test\n\ncorrect preexisting java doc issue","distinct":true,"url":"https://api.github.com/repos/jamesemery/htsjdk/commits/6141de3e8885cb3491fef598db19bdf342a94060"},{"sha":"87b1e874e4d81044411b21a667fef0294061401a","author":{"name":"ldgauthier","email":"b1a4f40ac2c4c2fd1f36cd2f581faa9fdd10a6b5@broadinstitute.org"},"message":"Merge pull request #663 from bbimber/GenotypeAttributes\n\nGenotype attributes","distinct":true,"url":"https://api.github.com/repos/jamesemery/htsjdk/commits/87b1e874e4d81044411b21a667fef0294061401a"},{"sha":"ea80585ab3c50bd2ca453612d19e20bb1309c9de","author":{"name":"Len Trigg","email":"568a2044e2f8f2a094906c0adf39b4ec7b09c0a8@realtimegenomics.com"},"message":"Fix self-suppression problem with exception handling in AbstractAsyncWriter\n\nAn exception thrown during synchronousWrite() by the underlying thread\nis typically picked up during write()'s invocation of checkAndRethrow().\nSubsequent calling of close() (e.g. by try-with-resources) would result\nin an attempt to throw the same exception instance.\n\nThis commit ensures that the underlying exception is only thrown once,\nby clearing the AtomicReference to the Throwable before throwing.\n\nIncludes a unit test which demonstrates the problem.","distinct":true,"url":"https://api.github.com/repos/jamesemery/htsjdk/commits/ea80585ab3c50bd2ca453612d19e20bb1309c9de"},{"sha":"0875b62d4066c439f3351d56466ef4fd3a0ad356","author":{"name":"a-nikitiuk","email":"e74e302801fb4318aaf899f9fc2226875686a400@nih.gov"},"message":"Improved SRA tests, corrected error message (#638)\n\n* Fixed SRA tests issues, corrected error message\r\n\r\n* Network related tests now depend on ability to resolve single SRR000123 accession","distinct":true,"url":"https://api.github.com/repos/jamesemery/htsjdk/commits/0875b62d4066c439f3351d56466ef4fd3a0ad356"},{"sha":"702e77f980c8b80aa3491f67c0e35d1d45344a56","author":{"name":"kbergin","email":"a56cad5b41bfe77b977c8e34f3645701357fe8bd@broadinstitute.org"},"message":"Starting\n\nNew filter to keep pairs of interval together\n\nResponding to some review comments\n\nJava 8-ified test\n\nUpdating tests and decided on what to do about non primary alignments\n\nResponding to review comments round 2\n\nRemoving an unused import\n\nForgot to delete out a commented block of code. 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