{"action":"created","issue":{"url":"https://api.github.com/repos/mdtraj/mdtraj/issues/1139","repository_url":"https://api.github.com/repos/mdtraj/mdtraj","labels_url":"https://api.github.com/repos/mdtraj/mdtraj/issues/1139/labels{/name}","comments_url":"https://api.github.com/repos/mdtraj/mdtraj/issues/1139/comments","events_url":"https://api.github.com/repos/mdtraj/mdtraj/issues/1139/events","html_url":"https://github.com/mdtraj/mdtraj/pull/1139","id":164624391,"number":1139,"title":"Optimize baker_hubbard and wernet_nilsson functions","user":{"login":"connorbrinton","id":1848731,"avatar_url":"https://avatars.githubusercontent.com/u/1848731?v=3","gravatar_id":"","url":"https://api.github.com/users/connorbrinton","html_url":"https://github.com/connorbrinton","followers_url":"https://api.github.com/users/connorbrinton/followers","following_url":"https://api.github.com/users/connorbrinton/following{/other_user}","gists_url":"https://api.github.com/users/connorbrinton/gists{/gist_id}","starred_url":"https://api.github.com/users/connorbrinton/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/connorbrinton/subscriptions","organizations_url":"https://api.github.com/users/connorbrinton/orgs","repos_url":"https://api.github.com/users/connorbrinton/repos","events_url":"https://api.github.com/users/connorbrinton/events{/privacy}","received_events_url":"https://api.github.com/users/connorbrinton/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-07-08T21:59:28Z","updated_at":"2016-07-08T22:09:57Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/mdtraj/mdtraj/pulls/1139","html_url":"https://github.com/mdtraj/mdtraj/pull/1139","diff_url":"https://github.com/mdtraj/mdtraj/pull/1139.diff","patch_url":"https://github.com/mdtraj/mdtraj/pull/1139.patch"},"body":"Hi MDTraj team,\r\n\r\nHere are some changes I've made to the hbond-finding functions to make them run about six times faster, as well as adding the option sidechain_only, to consider only sidechain-sidechain interactions. I still have to write a test for the code, but in my ad-hoc testing all outputs have been identical to previous versions of mdtraj, just faster. Feel free to integrate this code however you like.\r\n\r\nNote: I also haven't added documentation for the sidechain_only option, which should be done if it's something you want to support.\r\n\r\nThanks,\r\nConnor"},"comment":{"url":"https://api.github.com/repos/mdtraj/mdtraj/issues/comments/231484824","html_url":"https://github.com/mdtraj/mdtraj/pull/1139#issuecomment-231484824","issue_url":"https://api.github.com/repos/mdtraj/mdtraj/issues/1139","id":231484824,"user":{"login":"mpharrigan","id":4967059,"avatar_url":"https://avatars.githubusercontent.com/u/4967059?v=3","gravatar_id":"","url":"https://api.github.com/users/mpharrigan","html_url":"https://github.com/mpharrigan","followers_url":"https://api.github.com/users/mpharrigan/followers","following_url":"https://api.github.com/users/mpharrigan/following{/other_user}","gists_url":"https://api.github.com/users/mpharrigan/gists{/gist_id}","starred_url":"https://api.github.com/users/mpharrigan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mpharrigan/subscriptions","organizations_url":"https://api.github.com/users/mpharrigan/orgs","repos_url":"https://api.github.com/users/mpharrigan/repos","events_url":"https://api.github.com/users/mpharrigan/events{/privacy}","received_events_url":"https://api.github.com/users/mpharrigan/received_events","type":"User","site_admin":false},"created_at":"2016-07-08T22:09:57Z","updated_at":"2016-07-08T22:09:57Z","body":"Looks like this also does some badly-needed refactoring cc #705 "}}
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