{"action":"created","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1200","repository_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1200/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1200/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1200/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1200","id":128381969,"number":1200,"title":"chip-seq pipeline","user":{"login":"yong27","id":87085,"avatar_url":"https://avatars.githubusercontent.com/u/87085?v=3","gravatar_id":"","url":"https://api.github.com/users/yong27","html_url":"https://github.com/yong27","followers_url":"https://api.github.com/users/yong27/followers","following_url":"https://api.github.com/users/yong27/following{/other_user}","gists_url":"https://api.github.com/users/yong27/gists{/gist_id}","starred_url":"https://api.github.com/users/yong27/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yong27/subscriptions","organizations_url":"https://api.github.com/users/yong27/orgs","repos_url":"https://api.github.com/users/yong27/repos","events_url":"https://api.github.com/users/yong27/events{/privacy}","received_events_url":"https://api.github.com/users/yong27/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-01-24T08:45:27Z","updated_at":"2016-02-19T19:45:58Z","closed_at":"2016-02-19T19:45:58Z","body":"Thanks for great workflow program!\r\n\r\nI tried chip-seq pipeline like follows.\r\n\r\n    $ bcbio_nextgen.py -w template illumina-chipseq project1 my.fastq\r\n    $ bcbio_nextgen.py config/project1.yaml -n 4\r\n\r\nBut it makes following errors.\r\n\r\n    ValueError: Unexpected configuration keyword in 'algorithm' section: ['peakcaller']\r\n    See configuration documentation for supported options:\r\n    https://bcbio-nextgen.readthedocs.org/en/latest/contents/configuration.html#algorithm-parameters\r\n\r\nDo I have to set for \"peakcaller\" algorithm? How can I do that?"},"comment":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/comments/186374102","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1200#issuecomment-186374102","issue_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1200","id":186374102,"user":{"login":"lpantano","id":1621788,"avatar_url":"https://avatars.githubusercontent.com/u/1621788?v=3","gravatar_id":"","url":"https://api.github.com/users/lpantano","html_url":"https://github.com/lpantano","followers_url":"https://api.github.com/users/lpantano/followers","following_url":"https://api.github.com/users/lpantano/following{/other_user}","gists_url":"https://api.github.com/users/lpantano/gists{/gist_id}","starred_url":"https://api.github.com/users/lpantano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lpantano/subscriptions","organizations_url":"https://api.github.com/users/lpantano/orgs","repos_url":"https://api.github.com/users/lpantano/repos","events_url":"https://api.github.com/users/lpantano/events{/privacy}","received_events_url":"https://api.github.com/users/lpantano/received_events","type":"User","site_admin":false},"created_at":"2016-02-19T19:45:58Z","updated_at":"2016-02-19T19:45:58Z","body":"I will close now, but feel free to re-open if you find more issues.\r\nthanks!"}}