{"action":"created","issue":{"url":"https://api.github.com/repos/holmrenser/IOGA/issues/5","repository_url":"https://api.github.com/repos/holmrenser/IOGA","labels_url":"https://api.github.com/repos/holmrenser/IOGA/issues/5/labels{/name}","comments_url":"https://api.github.com/repos/holmrenser/IOGA/issues/5/comments","events_url":"https://api.github.com/repos/holmrenser/IOGA/issues/5/events","html_url":"https://github.com/holmrenser/IOGA/issues/5","id":126298088,"number":5,"title":"Error running IOGA.py","user":{"login":"kk86bioinfo","id":2483401,"avatar_url":"https://avatars.githubusercontent.com/u/2483401?v=3","gravatar_id":"","url":"https://api.github.com/users/kk86bioinfo","html_url":"https://github.com/kk86bioinfo","followers_url":"https://api.github.com/users/kk86bioinfo/followers","following_url":"https://api.github.com/users/kk86bioinfo/following{/other_user}","gists_url":"https://api.github.com/users/kk86bioinfo/gists{/gist_id}","starred_url":"https://api.github.com/users/kk86bioinfo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kk86bioinfo/subscriptions","organizations_url":"https://api.github.com/users/kk86bioinfo/orgs","repos_url":"https://api.github.com/users/kk86bioinfo/repos","events_url":"https://api.github.com/users/kk86bioinfo/events{/privacy}","received_events_url":"https://api.github.com/users/kk86bioinfo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-01-12T22:56:33Z","updated_at":"2016-09-03T15:06:58Z","closed_at":null,"body":"Hi, I have an error encountered with IOGA.py. \r\n\r\n<code>\r\nsudo nohup python /opt/IOGA/IOGA.py --reference /opt/IOGA/plant_mitochondria.reference.fasta --forward ../PE1.fastq --reverse ../PE2.fastq --insertsize 250 --threads 40 > mesta-IOGA.log 2> mesta-IOGA.err &\r\n</code>\r\n\r\n<code>\r\nTraceback (most recent call last):\r\n  File \"/opt/IOGA/IOGA.py\", line 432, in <module>\r\n    main(args.reference,args.name,args.forward,args.reverse,args.threads,args.insertsize,args.maxrounds,args.verbose)\r\n\r\n  File \"/opt/IOGA/IOGA.py\", line 377, in main\r\n    source,FP,RP,final_iteration = IOGA_loop(name,ref,forward,reverse,insertsize,threads,maxrounds)\r\n\r\n  File \"/opt/IOGA/IOGA.py\", line 323, in IOGA_loop\r\n    if len(name.split('/')) == 1:\r\n\r\nAttributeError: 'NoneType' object has no attribute 'split'\r\n</code>"},"comment":{"url":"https://api.github.com/repos/holmrenser/IOGA/issues/comments/244551577","html_url":"https://github.com/holmrenser/IOGA/issues/5#issuecomment-244551577","issue_url":"https://api.github.com/repos/holmrenser/IOGA/issues/5","id":244551577,"user":{"login":"robur86","id":21972616,"avatar_url":"https://avatars.githubusercontent.com/u/21972616?v=3","gravatar_id":"","url":"https://api.github.com/users/robur86","html_url":"https://github.com/robur86","followers_url":"https://api.github.com/users/robur86/followers","following_url":"https://api.github.com/users/robur86/following{/other_user}","gists_url":"https://api.github.com/users/robur86/gists{/gist_id}","starred_url":"https://api.github.com/users/robur86/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/robur86/subscriptions","organizations_url":"https://api.github.com/users/robur86/orgs","repos_url":"https://api.github.com/users/robur86/repos","events_url":"https://api.github.com/users/robur86/events{/privacy}","received_events_url":"https://api.github.com/users/robur86/received_events","type":"User","site_admin":false},"created_at":"2016-09-03T15:06:58Z","updated_at":"2016-09-03T15:06:58Z","body":"Hi,\r\n\r\nI wanted to compare IOGA to other oranellar assemblers. However, I have encountered the same error. Has the issue been solved?\r\n\r\n ~/Prog/IOGA-master/IOGA.py -r ref.fasta -1 F.fastq -2 R.fastq\r\n\r\n/IOGA-master/IOGA_config.json\r\n/IOGA-master/IOGA_config.json\r\n[None] Quality trimming with BBduk\r\nTraceback (most recent call last):\r\n  File \"/IOGA-master/IOGA.py\", line 432, in <module>\r\n    main(args.reference,args.name,args.forward,args.reverse,args.threads,args.insertsize,args.maxrounds,args.verbose)\r\n  File \"/IOGA-master/IOGA.py\", line 377, in main\r\n    source,FP,RP,final_iteration = IOGA_loop(name,ref,forward,reverse,insertsize,threads,maxrounds)\r\n  File \"/IOGA-master/IOGA.py\", line 323, in IOGA_loop\r\n    if len(name.split('/')) == 1:\r\nAttributeError: 'NoneType' object has no attribute 'split'\r\n"}}
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