{"action":"created","issue":{"url":"https://api.github.com/repos/ohnosequences/mg7/issues/24","repository_url":"https://api.github.com/repos/ohnosequences/mg7","labels_url":"https://api.github.com/repos/ohnosequences/mg7/issues/24/labels{/name}","comments_url":"https://api.github.com/repos/ohnosequences/mg7/issues/24/comments","events_url":"https://api.github.com/repos/ohnosequences/mg7/issues/24/events","html_url":"https://github.com/ohnosequences/mg7/pull/24","id":137683907,"number":24,"title":"Fasta input for pipeline without Flash","user":{"login":"laughedelic","id":766656,"avatar_url":"https://avatars.githubusercontent.com/u/766656?v=3","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/ohnosequences/mg7/labels/feature","name":"feature","color":"bfe5bf"},{"url":"https://api.github.com/repos/ohnosequences/mg7/labels/in%20progress","name":"in progress","color":"207de5"}],"state":"open","locked":false,"assignee":{"login":"laughedelic","id":766656,"avatar_url":"https://avatars.githubusercontent.com/u/766656?v=3","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/ohnosequences/mg7/milestones/2","html_url":"https://github.com/ohnosequences/mg7/milestones/v1.0-M2","labels_url":"https://api.github.com/repos/ohnosequences/mg7/milestones/2/labels","id":1605648,"number":2,"title":"v1.0-M2","description":"Most urgent improvements needed for validating consistency of the results","creator":{"login":"laughedelic","id":766656,"avatar_url":"https://avatars.githubusercontent.com/u/766656?v=3","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false},"open_issues":2,"closed_issues":10,"state":"open","created_at":"2016-02-25T16:44:01Z","updated_at":"2016-03-02T23:38:12Z","due_on":"2016-02-29T23:00:00Z","closed_at":null},"comments":5,"created_at":"2016-03-01T20:54:40Z","updated_at":"2016-03-02T23:54:16Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/ohnosequences/mg7/pulls/24","html_url":"https://github.com/ohnosequences/mg7/pull/24","diff_url":"https://github.com/ohnosequences/mg7/pull/24.diff","patch_url":"https://github.com/ohnosequences/mg7/pull/24.patch"},"body":"#22 doesn't solve the issue:\r\n\r\nWe want to pass fasta files as input. If we don't have #21, then the pipeline is as follows:\r\n\r\n1. split (which currently splits files on chunks of 2/4 rows, which **doesn't work with Fasta**)\r\n2. blast (which takes each chunk, reads first 2 rows of it and makes out of it a fasta file for Blast)\r\n3. merge\r\n4. assign\r\n5. count\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/ohnosequences/mg7/issues/comments/191499918","html_url":"https://github.com/ohnosequences/mg7/pull/24#issuecomment-191499918","issue_url":"https://api.github.com/repos/ohnosequences/mg7/issues/24","id":191499918,"user":{"login":"laughedelic","id":766656,"avatar_url":"https://avatars.githubusercontent.com/u/766656?v=3","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false},"created_at":"2016-03-02T23:54:15Z","updated_at":"2016-03-02T23:54:16Z","body":"LGTM\r\nI've merged #26 fixes in. Now I'm merging this and going to test it tomorrow.\n\n[![Approved with PullApprove](https://img.shields.io/badge/pullapprove-approved-brightgreen.svg)](https://pullapprove.com/ohnosequences/mg7/pull-request/24/?utm_source=github-pr&utm_medium=comment-badge&utm_campaign=ohnosequences/mg7)"}}