{"action":"created","issue":{"url":"https://api.github.com/repos/vgteam/vg/issues/503","repository_url":"https://api.github.com/repos/vgteam/vg","labels_url":"https://api.github.com/repos/vgteam/vg/issues/503/labels{/name}","comments_url":"https://api.github.com/repos/vgteam/vg/issues/503/comments","events_url":"https://api.github.com/repos/vgteam/vg/issues/503/events","html_url":"https://github.com/vgteam/vg/issues/503","id":182164012,"number":503,"title":"Dockerfile fails to build","user":{"login":"NickSto","id":645773,"avatar_url":"https://avatars.githubusercontent.com/u/645773?v=3","gravatar_id":"","url":"https://api.github.com/users/NickSto","html_url":"https://github.com/NickSto","followers_url":"https://api.github.com/users/NickSto/followers","following_url":"https://api.github.com/users/NickSto/following{/other_user}","gists_url":"https://api.github.com/users/NickSto/gists{/gist_id}","starred_url":"https://api.github.com/users/NickSto/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NickSto/subscriptions","organizations_url":"https://api.github.com/users/NickSto/orgs","repos_url":"https://api.github.com/users/NickSto/repos","events_url":"https://api.github.com/users/NickSto/events{/privacy}","received_events_url":"https://api.github.com/users/NickSto/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2016-10-11T03:17:44Z","updated_at":"2016-10-12T00:19:59Z","closed_at":null,"body":"I'm trying to get a good Docker image working, and wanted to note that the current Dockerfile isn't building for me.\r\n\r\nI'm using Ubuntu 14.04, and I'm working with vg commit da2de77. When I build with Docker, it fails with the following error:\r\n```\r\nE: Unable to locate package g++-4.9\r\nE: Couldn't find any package by regex 'g++-4.9'\r\nThe command '/bin/sh -c echo \"deb http://archive.ubuntu.com/ubuntu trusty-backports main restricted universe multiverse\" | sudo tee -a /etc/apt/sources.list &&     apt-get update &&     apt-get install -y         build-essential         gcc-4.9         g++-4.9         pkg-config         jq/trusty-backports         sudo &&     make get-deps &&     rm -rf /var/lib/apt/lists/*' returned a non-zero code: 100\r\n```\r\n\r\nSeems like a pretty basic thing: the wrong package name. Though I don't understand how it was correct at one point but not now."},"comment":{"url":"https://api.github.com/repos/vgteam/vg/issues/comments/253084602","html_url":"https://github.com/vgteam/vg/issues/503#issuecomment-253084602","issue_url":"https://api.github.com/repos/vgteam/vg/issues/503","id":253084602,"user":{"login":"NickSto","id":645773,"avatar_url":"https://avatars.githubusercontent.com/u/645773?v=3","gravatar_id":"","url":"https://api.github.com/users/NickSto","html_url":"https://github.com/NickSto","followers_url":"https://api.github.com/users/NickSto/followers","following_url":"https://api.github.com/users/NickSto/following{/other_user}","gists_url":"https://api.github.com/users/NickSto/gists{/gist_id}","starred_url":"https://api.github.com/users/NickSto/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NickSto/subscriptions","organizations_url":"https://api.github.com/users/NickSto/orgs","repos_url":"https://api.github.com/users/NickSto/repos","events_url":"https://api.github.com/users/NickSto/events{/privacy}","received_events_url":"https://api.github.com/users/NickSto/received_events","type":"User","site_admin":false},"created_at":"2016-10-12T00:19:59Z","updated_at":"2016-10-12T00:19:59Z","body":"@adamnovak D'oh! Right, sorry, here's the last few lines when run in serial.\r\n\r\n```\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/deconstructor.o src/deconstructor.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/vectorizer.o src/vectorizer.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/sampler.o src/sampler.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/filter.o src/filter.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/readfilter.o src/readfilter.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\n. ./source_me.sh && g++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/ssw_aligner.o src/ssw_aligner.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/bubbles.o src/bubbles.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\ng++ -O3 -msse4.1 -fopenmp -std=c++11 -ggdb -g -c -o obj/translator.o src/translator.cpp -I/vg/include -I. -I/vg/src -I/vg/src/unittest -I/vg/cpp -I/vg/include/dynamic -I/vg/include/sonLib -ggdb -L/vg/lib -lvcflib -lgssw -lssw -lprotobuf -lhts -lpthread -ljansson -lncurses -lrocksdb -lsnappy -lz -lbz2 -lgcsa2 -lxg -ldivsufsort -ldivsufsort64 -lvcfh -lgfakluge -lraptor2 -lsupbub -lsdsl -lpinchesandcacti -l3edgeconnected  -lsonlib -lrt\r\nmake: *** No rule to make target '.git', needed by 'include/vg_git_version.hpp'.  Stop.\r\nThe command '/bin/sh -c . /vg/source_me.sh && make' returned a non-zero code: 2\r\n```"}}
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