{"action":"created","issue":{"url":"https://api.github.com/repos/CSB5/INC-Seq/issues/4","repository_url":"https://api.github.com/repos/CSB5/INC-Seq","labels_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/4/comments","events_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/4/events","html_url":"https://github.com/CSB5/INC-Seq/issues/4","id":191012052,"number":4,"title":"Error using pbdagcon","user":{"login":"JaLuxe","id":18743450,"avatar_url":"https://avatars.githubusercontent.com/u/18743450?v=3","gravatar_id":"","url":"https://api.github.com/users/JaLuxe","html_url":"https://github.com/JaLuxe","followers_url":"https://api.github.com/users/JaLuxe/followers","following_url":"https://api.github.com/users/JaLuxe/following{/other_user}","gists_url":"https://api.github.com/users/JaLuxe/gists{/gist_id}","starred_url":"https://api.github.com/users/JaLuxe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JaLuxe/subscriptions","organizations_url":"https://api.github.com/users/JaLuxe/orgs","repos_url":"https://api.github.com/users/JaLuxe/repos","events_url":"https://api.github.com/users/JaLuxe/events{/privacy}","received_events_url":"https://api.github.com/users/JaLuxe/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":7,"created_at":"2016-11-22T13:50:25Z","updated_at":"2016-11-22T16:59:57Z","closed_at":null,"body":"I am currently testing you software and ran into a small problem:\r\n\r\n![error_161122_2](https://cloud.githubusercontent.com/assets/18743450/20526027/7d75186c-b0c2-11e6-8373-384304ae26e5.PNG)\r\n\r\nI tried to perform the task manually from the terminal which resulted in the following output:\r\n![error_161122_3](https://cloud.githubusercontent.com/assets/18743450/20526028/7d776770-b0c2-11e6-99b9-69c22b18d750.PNG)\r\n\r\nIf i add spaces between the optional inputs and their respective values, pbdagcon works just fine as can be seen in the last picture.\r\n![error_161122_4](https://cloud.githubusercontent.com/assets/18743450/20526029/7d7943f6-b0c2-11e6-8f40-353c1af15e7a.PNG)\r\n\r\nis there anything i can do to get around this problem?\r\n\r\nBest regards,\r\nJaLuxe"},"comment":{"url":"https://api.github.com/repos/CSB5/INC-Seq/issues/comments/262298960","html_url":"https://github.com/CSB5/INC-Seq/issues/4#issuecomment-262298960","issue_url":"https://api.github.com/repos/CSB5/INC-Seq/issues/4","id":262298960,"user":{"login":"JaLuxe","id":18743450,"avatar_url":"https://avatars.githubusercontent.com/u/18743450?v=3","gravatar_id":"","url":"https://api.github.com/users/JaLuxe","html_url":"https://github.com/JaLuxe","followers_url":"https://api.github.com/users/JaLuxe/followers","following_url":"https://api.github.com/users/JaLuxe/following{/other_user}","gists_url":"https://api.github.com/users/JaLuxe/gists{/gist_id}","starred_url":"https://api.github.com/users/JaLuxe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JaLuxe/subscriptions","organizations_url":"https://api.github.com/users/JaLuxe/orgs","repos_url":"https://api.github.com/users/JaLuxe/repos","events_url":"https://api.github.com/users/JaLuxe/events{/privacy}","received_events_url":"https://api.github.com/users/JaLuxe/received_events","type":"User","site_admin":false},"created_at":"2016-11-22T16:59:57Z","updated_at":"2016-11-22T16:59:57Z","body":"\n  \n  I currently have no more access to the machine, but I downloaded it today via apt-get. Thus I think it should be the latest.\nAm 22.11.16, 16:53, Chenhao Li <notifications@github.com> schrieb:\n\n  \n    \n      Could you let me know your PBDAGCON version?\n    \n    \n      The previous problem was because the older version somehow could go into infinite loop and the recursion was meant to fix that by trimming a few bases (although I don't understand how this fix it fully). And it seems the recursion went into infinite loop until stack overflow on your machine. I was not expecting the program to behave differently on different machines. I will leave this thread open, in case others face the same problem.\n    \n    \n      —\n      You are receiving this because you authored the thread.\n      Reply to this email directly, view it on GitHub, or mute the thread."}}
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