{"action":"created","issue":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1789","repository_url":"https://api.github.com/repos/CellProfiler/CellProfiler","labels_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1789/labels{/name}","comments_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1789/comments","events_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1789/events","html_url":"https://github.com/CellProfiler/CellProfiler/issues/1789","id":137352318,"number":1789,"title":"ReassignObjectNumbers: Per-parent unification performing inappropriate masking","user":{"login":"braymp","id":1186440,"avatar_url":"https://avatars.githubusercontent.com/u/1186440?v=3","gravatar_id":"","url":"https://api.github.com/users/braymp","html_url":"https://github.com/braymp","followers_url":"https://api.github.com/users/braymp/followers","following_url":"https://api.github.com/users/braymp/following{/other_user}","gists_url":"https://api.github.com/users/braymp/gists{/gist_id}","starred_url":"https://api.github.com/users/braymp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/braymp/subscriptions","organizations_url":"https://api.github.com/users/braymp/orgs","repos_url":"https://api.github.com/users/braymp/repos","events_url":"https://api.github.com/users/braymp/events{/privacy}","received_events_url":"https://api.github.com/users/braymp/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/labels/Bug","name":"Bug","color":"e10c02"}],"state":"closed","locked":false,"assignee":{"login":"LeeKamentsky","id":660469,"avatar_url":"https://avatars.githubusercontent.com/u/660469?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeKamentsky","html_url":"https://github.com/LeeKamentsky","followers_url":"https://api.github.com/users/LeeKamentsky/followers","following_url":"https://api.github.com/users/LeeKamentsky/following{/other_user}","gists_url":"https://api.github.com/users/LeeKamentsky/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeKamentsky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeKamentsky/subscriptions","organizations_url":"https://api.github.com/users/LeeKamentsky/orgs","repos_url":"https://api.github.com/users/LeeKamentsky/repos","events_url":"https://api.github.com/users/LeeKamentsky/events{/privacy}","received_events_url":"https://api.github.com/users/LeeKamentsky/received_events","type":"User","site_admin":false},"milestone":null,"comments":8,"created_at":"2016-02-29T19:48:06Z","updated_at":"2016-03-09T19:04:22Z","closed_at":"2016-03-08T23:19:32Z","body":"In the attached pipeline (to be run with the two sample images), the three objects are made children of an overlapping parent object; these are unified per-parent in ReassignObjectNumbers. \r\n\r\nRelateObjects shows the desired outcome: the 3 objects are unified, with original boundaries intact.\r\n\r\nHowever, in ReassignObjectNumbers, the 3 objects are basically masked, then unified.\r\n\r\n![untitled-2](https://cloud.githubusercontent.com/assets/1186440/13406761/46dd569e-def3-11e5-999f-15f4d01ea9d5.png)\r\n![untitled-1](https://cloud.githubusercontent.com/assets/1186440/13406762/46e3aea4-def3-11e5-9b44-e9d277cc2882.png)\r\n[issue.cppipe.txt](https://github.com/CellProfiler/CellProfiler/files/151634/issue.cppipe.txt)"},"comment":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/comments/194454743","html_url":"https://github.com/CellProfiler/CellProfiler/issues/1789#issuecomment-194454743","issue_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1789","id":194454743,"user":{"login":"dlogan","id":1225595,"avatar_url":"https://avatars.githubusercontent.com/u/1225595?v=3","gravatar_id":"","url":"https://api.github.com/users/dlogan","html_url":"https://github.com/dlogan","followers_url":"https://api.github.com/users/dlogan/followers","following_url":"https://api.github.com/users/dlogan/following{/other_user}","gists_url":"https://api.github.com/users/dlogan/gists{/gist_id}","starred_url":"https://api.github.com/users/dlogan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dlogan/subscriptions","organizations_url":"https://api.github.com/users/dlogan/orgs","repos_url":"https://api.github.com/users/dlogan/repos","events_url":"https://api.github.com/users/dlogan/events{/privacy}","received_events_url":"https://api.github.com/users/dlogan/received_events","type":"User","site_admin":false},"created_at":"2016-03-09T19:04:22Z","updated_at":"2016-03-09T19:04:22Z","body":"Thanks - I have 9 jobs re-running that had failed.  @LeeKamentsky did you patch the same CPcluster version for this fix.  I just killed the jobs and they started re-running so I'm hoping so."}}