{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2533","repository_url":"https://api.github.com/repos/galaxyproject/galaxy","labels_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2533/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2533/comments","events_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2533/events","html_url":"https://github.com/galaxyproject/galaxy/issues/2533","id":161806808,"number":2533,"title":"NCBI SRA Tools have a new dependency issue at http://usegalaxy.org","user":{"login":"jennaj","id":8999735,"avatar_url":"https://avatars.githubusercontent.com/u/8999735?v=3","gravatar_id":"","url":"https://api.github.com/users/jennaj","html_url":"https://github.com/jennaj","followers_url":"https://api.github.com/users/jennaj/followers","following_url":"https://api.github.com/users/jennaj/following{/other_user}","gists_url":"https://api.github.com/users/jennaj/gists{/gist_id}","starred_url":"https://api.github.com/users/jennaj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jennaj/subscriptions","organizations_url":"https://api.github.com/users/jennaj/orgs","repos_url":"https://api.github.com/users/jennaj/repos","events_url":"https://api.github.com/users/jennaj/events{/privacy}","received_events_url":"https://api.github.com/users/jennaj/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/galaxyproject/galaxy/labels/area/tools","name":"area/tools","color":"006b75"}],"state":"open","locked":false,"assignee":{"login":"martenson","id":1814954,"avatar_url":"https://avatars.githubusercontent.com/u/1814954?v=3","gravatar_id":"","url":"https://api.github.com/users/martenson","html_url":"https://github.com/martenson","followers_url":"https://api.github.com/users/martenson/followers","following_url":"https://api.github.com/users/martenson/following{/other_user}","gists_url":"https://api.github.com/users/martenson/gists{/gist_id}","starred_url":"https://api.github.com/users/martenson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/martenson/subscriptions","organizations_url":"https://api.github.com/users/martenson/orgs","repos_url":"https://api.github.com/users/martenson/repos","events_url":"https://api.github.com/users/martenson/events{/privacy}","received_events_url":"https://api.github.com/users/martenson/received_events","type":"User","site_admin":false},"assignees":[{"login":"martenson","id":1814954,"avatar_url":"https://avatars.githubusercontent.com/u/1814954?v=3","gravatar_id":"","url":"https://api.github.com/users/martenson","html_url":"https://github.com/martenson","followers_url":"https://api.github.com/users/martenson/followers","following_url":"https://api.github.com/users/martenson/following{/other_user}","gists_url":"https://api.github.com/users/martenson/gists{/gist_id}","starred_url":"https://api.github.com/users/martenson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/martenson/subscriptions","organizations_url":"https://api.github.com/users/martenson/orgs","repos_url":"https://api.github.com/users/martenson/repos","events_url":"https://api.github.com/users/martenson/events{/privacy}","received_events_url":"https://api.github.com/users/martenson/received_events","type":"User","site_admin":false}],"milestone":null,"comments":13,"created_at":"2016-06-22T23:06:41Z","updated_at":"2016-09-29T21:02:26Z","closed_at":null,"body":"**Example of errors are in this history**:  https://usegalaxy.org/u/jen/h/srr3020343-httpsbiostarusegalaxyorgp18195\r\n\r\n**Reported at** https://biostar.usegalaxy.org/p/18195\r\n\r\n**Status** Was a problem, later resolved, now an issue again.\r\n\r\n**Alternatives:**\r\n 1. Use the tool Get Data > EBI SRA. Many datasets are in both locations.\r\n 2. Download the data directly from NCBI using their protocols, the use the upload tool with FTP to get the data into Galaxy. https://wiki.galaxyproject.org/Support#Loading_data"},"comment":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/comments/250590392","html_url":"https://github.com/galaxyproject/galaxy/issues/2533#issuecomment-250590392","issue_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/2533","id":250590392,"user":{"login":"blankenberg","id":1231190,"avatar_url":"https://avatars.githubusercontent.com/u/1231190?v=3","gravatar_id":"","url":"https://api.github.com/users/blankenberg","html_url":"https://github.com/blankenberg","followers_url":"https://api.github.com/users/blankenberg/followers","following_url":"https://api.github.com/users/blankenberg/following{/other_user}","gists_url":"https://api.github.com/users/blankenberg/gists{/gist_id}","starred_url":"https://api.github.com/users/blankenberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/blankenberg/subscriptions","organizations_url":"https://api.github.com/users/blankenberg/orgs","repos_url":"https://api.github.com/users/blankenberg/repos","events_url":"https://api.github.com/users/blankenberg/events{/privacy}","received_events_url":"https://api.github.com/users/blankenberg/received_events","type":"User","site_admin":false},"created_at":"2016-09-29T21:02:26Z","updated_at":"2016-09-29T21:02:26Z","body":"fwiiw: SRR3020343 as sam worked on a dev instance for me just fine. The final sam file is 22.6 GB.\r\n\r\n```\r\n2016-09-29T20:32:06 prefetch.2.5.2: 1) Downloading 'SRR3020343'...\r\n2016-09-29T20:32:06 prefetch.2.5.2:  Downloading via fasp...\r\nSRR3020343 1,073,217,536/5,964,823,375 1023M/5G 17%        \r\nSRR3020343 2,111,242,240/5,964,823,375 1.966G/5G 35%      \r\nSRR3020343 3,252,158,464/5,964,823,375 3.028G/5G 54%      \r\nSRR3020343 4,990,107,648/5,964,823,375 4.647G/5G 83%      \r\n2016-09-29T20:36:48 prefetch.2.5.2:  fasp download succeed\r\n2016-09-29T20:36:48 prefetch.2.5.2: 1) 'SRR3020343' was downloaded successfully\r\n2016-09-29T20:36:48 prefetch.2.5.2: 'SRR3020343' has 0 unresolved dependencies\r\n```"}}
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