{"action":"created","issue":{"url":"https://api.github.com/repos/adamjorr/somatic-variation/issues/15","repository_url":"https://api.github.com/repos/adamjorr/somatic-variation","labels_url":"https://api.github.com/repos/adamjorr/somatic-variation/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/adamjorr/somatic-variation/issues/15/comments","events_url":"https://api.github.com/repos/adamjorr/somatic-variation/issues/15/events","html_url":"https://github.com/adamjorr/somatic-variation/issues/15","id":197266266,"number":15,"title":"fq or fq.gz","user":{"login":"roblanf","id":895251,"avatar_url":"https://avatars.githubusercontent.com/u/895251?v=3","gravatar_id":"","url":"https://api.github.com/users/roblanf","html_url":"https://github.com/roblanf","followers_url":"https://api.github.com/users/roblanf/followers","following_url":"https://api.github.com/users/roblanf/following{/other_user}","gists_url":"https://api.github.com/users/roblanf/gists{/gist_id}","starred_url":"https://api.github.com/users/roblanf/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/roblanf/subscriptions","organizations_url":"https://api.github.com/users/roblanf/orgs","repos_url":"https://api.github.com/users/roblanf/repos","events_url":"https://api.github.com/users/roblanf/events{/privacy}","received_events_url":"https://api.github.com/users/roblanf/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2016-12-22T21:05:21Z","updated_at":"2016-12-22T23:55:46Z","closed_at":null,"body":"In clean_reads.sh lines 94 and 97, can you change the input search string at the end of each line to \r\n\r\n*.fq.gz \r\n\r\ninstead of the current\r\n\r\n*.fq\r\n\r\nAlso on line 11 can you change the default search pattern to:\r\n\r\n*.fastq.gz\r\n\r\nOur reads are all gzipped, and both Rcorrector and Khmer seem fine with this. Unless of course I've missed something.\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/adamjorr/somatic-variation/issues/comments/268916681","html_url":"https://github.com/adamjorr/somatic-variation/issues/15#issuecomment-268916681","issue_url":"https://api.github.com/repos/adamjorr/somatic-variation/issues/15","id":268916681,"user":{"login":"adamjorr","id":7577847,"avatar_url":"https://avatars.githubusercontent.com/u/7577847?v=3","gravatar_id":"","url":"https://api.github.com/users/adamjorr","html_url":"https://github.com/adamjorr","followers_url":"https://api.github.com/users/adamjorr/followers","following_url":"https://api.github.com/users/adamjorr/following{/other_user}","gists_url":"https://api.github.com/users/adamjorr/gists{/gist_id}","starred_url":"https://api.github.com/users/adamjorr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adamjorr/subscriptions","organizations_url":"https://api.github.com/users/adamjorr/orgs","repos_url":"https://api.github.com/users/adamjorr/repos","events_url":"https://api.github.com/users/adamjorr/events{/privacy}","received_events_url":"https://api.github.com/users/adamjorr/received_events","type":"User","site_admin":false},"created_at":"2016-12-22T23:55:46Z","updated_at":"2016-12-22T23:55:46Z","body":"OK. Will fix."}}
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