{"action":"created","issue":{"url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/131","repository_url":"https://api.github.com/repos/BioJulia/Bio.jl","labels_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/131/labels{/name}","comments_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/131/comments","events_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/131/events","html_url":"https://github.com/BioJulia/Bio.jl/pull/131","id":131874258,"number":131,"title":"Struc module - framework for parsing PDB files and dealing with protein structures","user":{"login":"jgreener64","id":6620652,"avatar_url":"https://avatars.githubusercontent.com/u/6620652?v=3","gravatar_id":"","url":"https://api.github.com/users/jgreener64","html_url":"https://github.com/jgreener64","followers_url":"https://api.github.com/users/jgreener64/followers","following_url":"https://api.github.com/users/jgreener64/following{/other_user}","gists_url":"https://api.github.com/users/jgreener64/gists{/gist_id}","starred_url":"https://api.github.com/users/jgreener64/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jgreener64/subscriptions","organizations_url":"https://api.github.com/users/jgreener64/orgs","repos_url":"https://api.github.com/users/jgreener64/repos","events_url":"https://api.github.com/users/jgreener64/events{/privacy}","received_events_url":"https://api.github.com/users/jgreener64/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/BioJulia/Bio.jl/labels/stage:%20WIP","name":"stage: WIP","color":"d4c5f9"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":24,"created_at":"2016-02-06T16:43:43Z","updated_at":"2016-03-08T14:09:10Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/BioJulia/Bio.jl/pulls/131","html_url":"https://github.com/BioJulia/Bio.jl/pull/131","diff_url":"https://github.com/BioJulia/Bio.jl/pull/131.diff","patch_url":"https://github.com/BioJulia/Bio.jl/pull/131.patch"},"body":"This is a work-in-progress PR containing a potential new module for base BioJulia - Struc, which deals with PDB files and protein structures. See the [notebook](https://github.com/jgreener64/Bio.jl/blob/strucmin/doc/struc.ipynb) in docs for an overview; the code also has comments.\r\n\r\nWould be interested to hear thoughts on the overall structure of the module - is it doing the right type of things in the right way? The overall approach is heavily based on the Biopython PDB parser.\r\n\r\nI am currently working on improving parts of the code, particularly the `organise` and `read` functions. Speed-wise the collect functions and iterations are fast but `organise` and `read` take longer. Also working on writing tests.\r\n\r\nThanks,\r\nJoe"},"comment":{"url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/comments/193797557","html_url":"https://github.com/BioJulia/Bio.jl/pull/131#issuecomment-193797557","issue_url":"https://api.github.com/repos/BioJulia/Bio.jl/issues/131","id":193797557,"user":{"login":"jgreener64","id":6620652,"avatar_url":"https://avatars.githubusercontent.com/u/6620652?v=3","gravatar_id":"","url":"https://api.github.com/users/jgreener64","html_url":"https://github.com/jgreener64","followers_url":"https://api.github.com/users/jgreener64/followers","following_url":"https://api.github.com/users/jgreener64/following{/other_user}","gists_url":"https://api.github.com/users/jgreener64/gists{/gist_id}","starred_url":"https://api.github.com/users/jgreener64/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jgreener64/subscriptions","organizations_url":"https://api.github.com/users/jgreener64/orgs","repos_url":"https://api.github.com/users/jgreener64/repos","events_url":"https://api.github.com/users/jgreener64/events{/privacy}","received_events_url":"https://api.github.com/users/jgreener64/received_events","type":"User","site_admin":false},"created_at":"2016-03-08T14:09:10Z","updated_at":"2016-03-08T14:09:10Z","body":"Have changed argument types as suggested.\r\n\r\nIf anyone has any other comments or suggestions let me know :+1: "}}