{"action":"created","issue":{"url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor/issues/1","repository_url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor","labels_url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor/issues/1/comments","events_url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor/issues/1/events","html_url":"https://github.com/ajs6f/fcrepo3-rdf-extractor/issues/1","id":190846618,"number":1,"title":"Doesn't like my config files.","user":{"login":"whikloj","id":2857697,"avatar_url":"https://avatars.githubusercontent.com/u/2857697?v=3","gravatar_id":"","url":"https://api.github.com/users/whikloj","html_url":"https://github.com/whikloj","followers_url":"https://api.github.com/users/whikloj/followers","following_url":"https://api.github.com/users/whikloj/following{/other_user}","gists_url":"https://api.github.com/users/whikloj/gists{/gist_id}","starred_url":"https://api.github.com/users/whikloj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/whikloj/subscriptions","organizations_url":"https://api.github.com/users/whikloj/orgs","repos_url":"https://api.github.com/users/whikloj/repos","events_url":"https://api.github.com/users/whikloj/events{/privacy}","received_events_url":"https://api.github.com/users/whikloj/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":23,"created_at":"2016-11-21T21:54:36Z","updated_at":"2016-11-26T16:54:39Z","closed_at":null,"body":"Tried to use this but am having trouble with my Akubra storage config file.\r\n```\r\n[whikloj@juno]/opt/fcrepo3-rdf-extractor% java -jar target/fcrepo3-rdf-extractor-0.0.1-SNAPSHOT.jar -a /usr/local/fedora/server/config/spring/akubra-llstore.xml -o /local/dam/staging/jareds_triples/juno_20161121.sparql\r\nINFO 15:50:26.012 (edu.si.fcrepo.Extract) Using 4 threads for extraction and a queue size of 1048576.\r\nINFO 15:50:26.018 (edu.si.fcrepo.Extract) Extracting to /local/dam/staging/jareds_triples/juno_20161121.sparql...\r\nINFO 15:50:26.018 (edu.si.fcrepo.Extract) with Akubra configuration from /usr/local/fedora/server/config/spring/akubra-llstore.xml.\r\nINFO 15:50:26.082 (org.springframework.context.support.FileSystemXmlApplicationContext) Refreshing org.springframework.context.support.FileSystemXmlApplicationContext@97e93f1: startup date [Mon Nov 21 15:50:26 GMT-06:00 2016]; root of context hierarchy\r\nINFO 15:50:26.111 (org.springframework.beans.factory.xml.XmlBeanDefinitionReader) Loading XML bean definitions from URL [file:/usr/local/fedora/server/config/spring/akubra-llstore.xml]\r\nINFO 15:50:26.169 (org.springframework.beans.factory.support.DefaultListableBeanFactory) Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@4fa1c212: defining beans [org.fcrepo.server.storage.lowlevel.ILowlevelStorage,org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorage,objectStore,fsObjectStore,fsObjectStoreMapper,datastreamStore,fsDatastreamStore,fsDatastreamStoreMapper,fedoraStorageHintProvider]; root of factory hierarchy\r\nINFO 15:50:26.170 (org.springframework.beans.factory.support.DefaultListableBeanFactory) Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@4fa1c212: defining beans [org.fcrepo.server.storage.lowlevel.ILowlevelStorage,org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorage,objectStore,fsObjectStore,fsObjectStoreMapper,datastreamStore,fsDatastreamStore,fsDatastreamStoreMapper,fedoraStorageHintProvider]; root of factory hierarchy\r\nException in thread \"main\" org.springframework.beans.factory.CannotLoadBeanClassException: Cannot find class [org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorageModule] for bean with name 'org.fcrepo.server.storage.lowlevel.ILowlevelStorage' defined in URL [file:/usr/local/fedora/server/config/spring/akubra-llstore.xml]; nested exception is java.lang.ClassNotFoundException: org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorageModule\r\n        at org.springframework.beans.factory.support.AbstractBeanFactory.resolveBeanClass(AbstractBeanFactory.java:1261)\r\n        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.predictBeanType(AbstractAutowireCapableBeanFactory.java:575)\r\n        at org.springframework.beans.factory.support.AbstractBeanFactory.isFactoryBean(AbstractBeanFactory.java:1330)\r\n        at org.springframework.beans.factory.support.AbstractBeanFactory.isFactoryBean(AbstractBeanFactory.java:896)\r\n        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:566)\r\n        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895)\r\n        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425)\r\n        at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:140)\r\n        at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:84)\r\n        at edu.si.fcrepo.Extract.init(Extract.java:194)\r\n        at edu.si.fcrepo.Extract.main(Extract.java:157)\r\nCaused by: java.lang.ClassNotFoundException: org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorageModule\r\n        at java.net.URLClassLoader.findClass(URLClassLoader.java:381)\r\n        at java.lang.ClassLoader.loadClass(ClassLoader.java:424)\r\n        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)\r\n        at java.lang.ClassLoader.loadClass(ClassLoader.java:357)\r\n        at org.springframework.util.ClassUtils.forName(ClassUtils.java:257)\r\n        at org.springframework.beans.factory.support.AbstractBeanDefinition.resolveBeanClass(AbstractBeanDefinition.java:408)\r\n        at org.springframework.beans.factory.support.AbstractBeanFactory.doResolveBeanClass(AbstractBeanFactory.java:1282)\r\n        at org.springframework.beans.factory.support.AbstractBeanFactory.resolveBeanClass(AbstractBeanFactory.java:1253)\r\n        ... 10 more\r\n[whikloj@juno]/opt/fcrepo3-rdf-extractor% \r\n```\r\n\r\nMy akubra-llstore.xml -> https://gist.github.com/whikloj/584dea271c6e872e4b3d574676781bcc"},"comment":{"url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor/issues/comments/263073731","html_url":"https://github.com/ajs6f/fcrepo3-rdf-extractor/issues/1#issuecomment-263073731","issue_url":"https://api.github.com/repos/ajs6f/fcrepo3-rdf-extractor/issues/1","id":263073731,"user":{"login":"whikloj","id":2857697,"avatar_url":"https://avatars.githubusercontent.com/u/2857697?v=3","gravatar_id":"","url":"https://api.github.com/users/whikloj","html_url":"https://github.com/whikloj","followers_url":"https://api.github.com/users/whikloj/followers","following_url":"https://api.github.com/users/whikloj/following{/other_user}","gists_url":"https://api.github.com/users/whikloj/gists{/gist_id}","starred_url":"https://api.github.com/users/whikloj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/whikloj/subscriptions","organizations_url":"https://api.github.com/users/whikloj/orgs","repos_url":"https://api.github.com/users/whikloj/repos","events_url":"https://api.github.com/users/whikloj/events{/privacy}","received_events_url":"https://api.github.com/users/whikloj/received_events","type":"User","site_admin":false},"created_at":"2016-11-26T16:54:39Z","updated_at":"2016-11-26T16:54:39Z","body":"Ok it took a bit but I have an N-Quad file of all my triples from Mulgara, then I sorted both files (at 17GB a piece that took some time and space).\r\n\r\nI'm going to try setting moving it to another server and execute it there.\r\n\r\nFor now I will say it is obvious there is stuff in Mulgara that is not in the rdf-extractor output.\r\n\r\nSimple `head` output for each sorted file shows.\r\n```\r\n[whikloj@juno]/var/indexes/triples% head juno_sorted.nq \r\n<info:fedora/changeme:13746/DC> <info:fedora/fedora-system:def/model#state> <info:fedora/fedora-system:def/model#Active> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746/DC> <info:fedora/fedora-system:def/view#disseminationType> <info:fedora/*/DC> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746/DC> <info:fedora/fedora-system:def/view#isVolatile> \"false\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746/DC> <info:fedora/fedora-system:def/view#lastModifiedDate> \"2015-06-11T15:45:32.275Z\"^^<http://www.w3.org/2001/XMLSchema#dateTime> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746/DC> <info:fedora/fedora-system:def/view#mimeType> \"text/xml\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746> <http://islandora.ca/ontology/relsext#generate_ocr> \"TRUE\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746> <http://islandora.ca/ontology/relsext#isPageNumber> \"12\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746> <http://islandora.ca/ontology/relsext#isPageOf> <info:fedora/changeme:13745> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746> <http://islandora.ca/ontology/relsext#isSection> \"1\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/changeme:13746> <http://islandora.ca/ontology/relsext#isSequenceNumber> \"12\" <info:ca.umanitoba.fedora#ri> .\r\n```\r\nversus\r\n```\r\n[whikloj@juno]/var/indexes/triples% head mulgara_sorted.nq \r\n<info:fedora/alan:testObject2/DC> <info:fedora/fedora-system:def/model#state> <info:fedora/fedora-system:def/model#Active> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2/DC> <info:fedora/fedora-system:def/view#disseminationType> <info:fedora/*/DC> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2/DC> <info:fedora/fedora-system:def/view#isVolatile> \"false\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2/DC> <info:fedora/fedora-system:def/view#lastModifiedDate> \"2012-07-26T19:04:56.856Z\"^^<http://www.w3.org/2001/XMLSchema#dateTime> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2/DC> <info:fedora/fedora-system:def/view#mimeType> \"text/xml\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2> <http://purl.org/dc/elements/1.1/identifier> \"alan:testObject2\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2> <http://purl.org/dc/elements/1.1/title> \"Alan's Test Object2\" <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2> <info:fedora/fedora-system:def/model#createdDate> \"2012-07-26T19:04:56.856Z\"^^<http://www.w3.org/2001/XMLSchema#dateTime> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2> <info:fedora/fedora-system:def/model#hasModel> <info:fedora/fedora-system:FedoraObject-3.0> <info:ca.umanitoba.fedora#ri> .\r\n<info:fedora/alan:testObject2> <info:fedora/fedora-system:def/model#label> \"Alan's Test Object2\" <info:ca.umanitoba.fedora#ri> .\r\n```\r\n\r\nWhat is confusing me is where did Mulgara get `<info:fedora/alan:testObject2>` from? I rebuilt this index from the filesystem using the stock indexer only about 2 weeks ago. Weird."}}
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