{"action":"opened","issue":{"url":"https://api.github.com/repos/TorkamaniLab/metapipe/issues/65","repository_url":"https://api.github.com/repos/TorkamaniLab/metapipe","labels_url":"https://api.github.com/repos/TorkamaniLab/metapipe/issues/65/labels{/name}","comments_url":"https://api.github.com/repos/TorkamaniLab/metapipe/issues/65/comments","events_url":"https://api.github.com/repos/TorkamaniLab/metapipe/issues/65/events","html_url":"https://github.com/TorkamaniLab/metapipe/issues/65","id":140314692,"number":65,"title":"Add: Metapipe Runtime Options","user":{"login":"Sonictherocketman","id":3310280,"avatar_url":"https://avatars.githubusercontent.com/u/3310280?v=3","gravatar_id":"","url":"https://api.github.com/users/Sonictherocketman","html_url":"https://github.com/Sonictherocketman","followers_url":"https://api.github.com/users/Sonictherocketman/followers","following_url":"https://api.github.com/users/Sonictherocketman/following{/other_user}","gists_url":"https://api.github.com/users/Sonictherocketman/gists{/gist_id}","starred_url":"https://api.github.com/users/Sonictherocketman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Sonictherocketman/subscriptions","organizations_url":"https://api.github.com/users/Sonictherocketman/orgs","repos_url":"https://api.github.com/users/Sonictherocketman/repos","events_url":"https://api.github.com/users/Sonictherocketman/events{/privacy}","received_events_url":"https://api.github.com/users/Sonictherocketman/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2016-03-11T23:07:06Z","updated_at":"2016-03-11T23:07:06Z","closed_at":null,"body":"Currently there is no way to specify submission options for the metapipe runtime. One must add all options manually to the output script. Having a metapipe options section would help this.\r\n\r\n# Desired\r\n\r\n```bash\r\n[COMMANDS]\r\npython somescript.py\r\n\r\n[METAPIPE OPTIONS]\r\n#PBS_O_WORKDIR ~/username"}}