{"push_id":1145599456,"size":1,"distinct_size":1,"ref":"refs/heads/ParserTest","head":"0c9f93594b13def16b3ac0bc87a79abce43aced0","before":"5dd1c02450639cbadbe713ae76b9596b700e026b","commits":[{"sha":"0c9f93594b13def16b3ac0bc87a79abce43aced0","author":{"name":"stefankoch","email":"596a3c23342948f2fc30a3818c84347c7e69e98c@141.244.28.127"},"message":"Basic Table Operations\nInput Tsv Parser\nTreeTableView\nAdduct View \nNext Button\nRT in Minutes\nFixed EIC\nOpen multiple mzXML\nColor!\nWidth!\nDefault and set color, width\nComments\nSimple Progress Bar / Threading\nStarted on Batch Tab\nBatch Tabs\nRenaming\nSimple peak picking\nxAxis correction (all adducts have same min max)\nMore peak picking\nCorrelation\nmore peak picking...\n...\nno more peak picking, comparison of AVGEIC\ngeneration of Interpolated EICs\nQuality of peak in the middle\nVisualization of ideal peak\nMethod restructuring\nBackup before Datastructure rework\nrework...\nMatrix for shortest path\nOptimized Path calculation\nPath visualization, Peak Prop Vis Toggle\nshiftview Fixes, load mzxml context menu, focus on clicked adduct in adductview (needs fixes)\nBefore Dataset-Maps\nAfter Dataset-Maps\nAcitve Dataset\nfixed currentdataset not being initialized\nchanged/fixed POM. netbeans has problems with maven+javafx, should work\nnow. Follow-up problems not foreseeable.\nWavelet peak picking\nM/Z chart shows ppm\nM/Z shift calculation/cleaning per file\nFixed ChartGenerator Loops\nScore for selected Files\nDelete Files\nDelete Batches\nminimized RAM\nfixed Parsing\nfixed File Deletion\nDeactivate Files\nChange Properties for selected files\nHighlight selected files in Adductview, select new ones\nChange color, width of files changes adductview/shift.\nUnselect in shiftview\nFixed Adductview, no selection, selection update\nHover, shiftview\nOpen Adduct from shiftview\nFixed Listener memomryleak\nscroll to selected OGroup when double click in Shiftview, default sort by RT\nAccordion rework...\n...done, draw multiple Datasets, select across Datasets\nincluded RT-range for shift calculation, commented out\nActive Dataset\nDe/activate whole Dataset\nParameters\nadditional scores\nNaive peak preparation\nNaive peak picking and fitting, output to console\nOutput to file, additional scores in Table\nProper sorting and start on Adductview labels\nfixed additional scores, min sorting for Scorepeakclose\nselect Opacity Mode in Shiftview\nExperimental Distance Opacity Mode\nNo need for PropArray\nChange PeakPicking and Baseline on the fly\nSmooth PropArray\nFixed missing M/Z values/chart\nSelection Rectangle in Shiftview\nSet Penalty Area\nProgress bar for Adductview\nDisable Charts in Adductview\nShow peak borders\nFix Output, fix Adductview, fix peak borders\nfixed issue with RT Tolerance>2\nsmall changes\nVisualize Penalty Area\nStarted with Peak matrix Visualization\nMoved peak vis, small fixes\nImplemented certainty\nsmall fixes, fleshed out certainty\nshow avg. certainty and %peaks found in Batch\nshow files in peak matrix vis\nstarted on peak Mode\npeak Mode implemented, only visual\npeak Mode manual peak, only visual\npeak Mode manual peak, peak picking\naddPeak Button\nfixed manual peak picking\nincluded cutoff in manual peak picking, only look for peak in inner 70% range\nchanged peak marker, don't delete manual peaks during automatic peak picking, don't add manual peak if peak is already there\ndelete peaks\nsmall fix\nmore adducts\ndelete empty slices, double->float\ndon't generate duplicate adducts\nfix selection in adductview\nsmall fixes\nfixed inactive file selection in shiftview\nbytes for MZ values, only 25% memory needed\nfix (delete Bins)\nstarted on IO\nworking IO, needs tuning\nShiftview own thread\nfixed peak view, more work in IO\nstart with MemoryMappedFile\nMemoryMappedFile\nmanual peak pick out of range fix, start new IOThread when crashed\nOutput includes generated Adducts\nAdduct Parameters\nvarious GUI changes\nvarious changes\ntried to fix binning\nadded start end RT value\nstarted on rework(no interpolation), parsing and slice generation done\nCharts done\ncorrecting peaks etc...\nvarious calculations\n...\nfixed MZshift calculation\nchanged RTshift calculation\nfixed peakPick beeing active when nextprev\nfixes to IOThread\nsmall fixes to peak picking\nSavitzky-Golay Peak picking\nArea Chart for Peaks\npeak index marker\npeak index marker for manual peaks\npeaks have to have a minimum length in both directions\nRe-storing slice information fixed\n...\ngravity\nNew shift calculation \"gravity\", visualization\nrefinements on \"gravity\"\n...\nfixed manual peak on stored slices\ngravity fitting\nvarious progressbars\nfixed fitting on batch\nshift is no longer displayed interpolated\n%found for gravity fixed\nparses labeling information from Input, currently not used\nchanged Output Generation to be more flexible\nfixed MaxIntensity calculation\nstarted implementing peak weight\nGravity charts properly alligned\nminimum length of consecutive signals implemented, to get rid of mostly empty slices\nGenerate Adducts: more information\nMore work on Adducts\n...\n...\nset peak weight\nPeak weight implemented, visualize in gravity-view\nfixed manual peak picking out of bonds\nadded more adduct slots\nadded all pos adducts from list\ndelete noise slices\nfixed error when drawing gravity chart\nRT and MZ Output\nMore Scores\nchecked peak picking, automatically select first file when gravity\nfixed graph labeling\nremoved nulls from Output\nMZ-value+Shift,RT-Shift in Output\nstarted on Input and Output customization\nInput Table\nInput Table done\nstarted on Output\nOutput Done\nAlign Graphs\nStarted on S/N\nImplemented Noise factor, changed IntensityScore\nNoise Parameter implemented\nFixed Intensity Score\nfixed refitting Scores\nfixed duplicate peaks\nfixed resolution other than 100","distinct":true,"url":"https://api.github.com/repos/S-T-K/JavaFXTable/commits/0c9f93594b13def16b3ac0bc87a79abce43aced0"}]}
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