{"action":"created","issue":{"url":"https://api.github.com/repos/HadrienG/InSilicoSeq/issues/3","repository_url":"https://api.github.com/repos/HadrienG/InSilicoSeq","labels_url":"https://api.github.com/repos/HadrienG/InSilicoSeq/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/HadrienG/InSilicoSeq/issues/3/comments","events_url":"https://api.github.com/repos/HadrienG/InSilicoSeq/issues/3/events","html_url":"https://github.com/HadrienG/InSilicoSeq/issues/3","id":190153835,"number":3,"title":"MetaGenome -> Reads","user":{"login":"HadrienG","id":7337110,"avatar_url":"https://avatars.githubusercontent.com/u/7337110?v=3","gravatar_id":"","url":"https://api.github.com/users/HadrienG","html_url":"https://github.com/HadrienG","followers_url":"https://api.github.com/users/HadrienG/followers","following_url":"https://api.github.com/users/HadrienG/following{/other_user}","gists_url":"https://api.github.com/users/HadrienG/gists{/gist_id}","starred_url":"https://api.github.com/users/HadrienG/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/HadrienG/subscriptions","organizations_url":"https://api.github.com/users/HadrienG/orgs","repos_url":"https://api.github.com/users/HadrienG/repos","events_url":"https://api.github.com/users/HadrienG/events{/privacy}","received_events_url":"https://api.github.com/users/HadrienG/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"HadrienG","id":7337110,"avatar_url":"https://avatars.githubusercontent.com/u/7337110?v=3","gravatar_id":"","url":"https://api.github.com/users/HadrienG","html_url":"https://github.com/HadrienG","followers_url":"https://api.github.com/users/HadrienG/followers","following_url":"https://api.github.com/users/HadrienG/following{/other_user}","gists_url":"https://api.github.com/users/HadrienG/gists{/gist_id}","starred_url":"https://api.github.com/users/HadrienG/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/HadrienG/subscriptions","organizations_url":"https://api.github.com/users/HadrienG/orgs","repos_url":"https://api.github.com/users/HadrienG/repos","events_url":"https://api.github.com/users/HadrienG/events{/privacy}","received_events_url":"https://api.github.com/users/HadrienG/received_events","type":"User","site_admin":false},"assignees":[{"login":"HadrienG","id":7337110,"avatar_url":"https://avatars.githubusercontent.com/u/7337110?v=3","gravatar_id":"","url":"https://api.github.com/users/HadrienG","html_url":"https://github.com/HadrienG","followers_url":"https://api.github.com/users/HadrienG/followers","following_url":"https://api.github.com/users/HadrienG/following{/other_user}","gists_url":"https://api.github.com/users/HadrienG/gists{/gist_id}","starred_url":"https://api.github.com/users/HadrienG/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/HadrienG/subscriptions","organizations_url":"https://api.github.com/users/HadrienG/orgs","repos_url":"https://api.github.com/users/HadrienG/repos","events_url":"https://api.github.com/users/HadrienG/events{/privacy}","received_events_url":"https://api.github.com/users/HadrienG/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2016-11-17T20:25:01Z","updated_at":"2016-11-21T12:50:45Z","closed_at":"2016-11-21T12:50:45Z","body":"Issue to track the progress on the [Roadmap](https://github.com/HadrienG/InSilicoSeq/issues/1) item \"From a set of genomes, output perfect reads in fastq format given abundance parameters\"\r\n\r\n**Test files:**\r\n- [genomes.fasta](https://github.com/HadrienG/InSilicoSeq/blob/master/data/genomes.fasta)\r\n- [abundance.txt](https://github.com/HadrienG/InSilicoSeq/blob/master/data/abundance.txt)\r\n\r\nNumber of genomes: 5\r\n\r\n- [x] Parse the file and get one SeqRecord per genome (we still assume complete genomes: one sequence per genome)\r\n- [x] Parse abundance.txt and calculate the necessary coverage per genome to satisfy the abundance requirements\r\n- [x] Generate the reads with the generator.reads() function\r\n- [ ] Use multiprocessing to parallelise the process (1 threads per genome?)\r\n- [x] Write the reads to file\r\n- [x] write tests\r\n"},"comment":{"url":"https://api.github.com/repos/HadrienG/InSilicoSeq/issues/comments/261928512","html_url":"https://github.com/HadrienG/InSilicoSeq/issues/3#issuecomment-261928512","issue_url":"https://api.github.com/repos/HadrienG/InSilicoSeq/issues/3","id":261928512,"user":{"login":"HadrienG","id":7337110,"avatar_url":"https://avatars.githubusercontent.com/u/7337110?v=3","gravatar_id":"","url":"https://api.github.com/users/HadrienG","html_url":"https://github.com/HadrienG","followers_url":"https://api.github.com/users/HadrienG/followers","following_url":"https://api.github.com/users/HadrienG/following{/other_user}","gists_url":"https://api.github.com/users/HadrienG/gists{/gist_id}","starred_url":"https://api.github.com/users/HadrienG/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/HadrienG/subscriptions","organizations_url":"https://api.github.com/users/HadrienG/orgs","repos_url":"https://api.github.com/users/HadrienG/repos","events_url":"https://api.github.com/users/HadrienG/events{/privacy}","received_events_url":"https://api.github.com/users/HadrienG/received_events","type":"User","site_admin":false},"created_at":"2016-11-21T12:50:45Z","updated_at":"2016-11-21T12:50:45Z","body":"Commit 3849f00 closes this, minus the multiprocessing support. Multithreading will have its own issue  one the simulator will be up and running single-threaded."}}
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