{"action":"created","issue":{"url":"https://api.github.com/repos/pombase/canto/issues/1148","repository_url":"https://api.github.com/repos/pombase/canto","labels_url":"https://api.github.com/repos/pombase/canto/issues/1148/labels{/name}","comments_url":"https://api.github.com/repos/pombase/canto/issues/1148/comments","events_url":"https://api.github.com/repos/pombase/canto/issues/1148/events","html_url":"https://github.com/pombase/canto/issues/1148","id":156933415,"number":1148,"title":"annotation extension config files (question behavior)","user":{"login":"ValWood","id":7359272,"avatar_url":"https://avatars.githubusercontent.com/u/7359272?v=3","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/pombase/canto/labels/extension%20interface","name":"extension interface","color":"006b75"},{"url":"https://api.github.com/repos/pombase/canto/labels/ontology_subsets","name":"ontology_subsets","color":"fbca04"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":10,"created_at":"2016-05-26T08:44:20Z","updated_at":"2016-06-20T11:51:54Z","closed_at":null,"body":"\r\n\r\nWhen I make an entry to the config files, I try to go as specific as possible  so that, for example I have not added\r\n\r\nprotein localization localizes\r\nbecause some descendants like\r\n\"protein import to the nucleus\" can have the  more specific prompt \"transports\"\r\n\r\n(transporting is a child of localizing, but not all localizing is transport, some is just 'holding something in place')\r\n\r\nHowever, it gets a bit tricky for terms like\r\n\t\"establishment of protein localization to organelle\"\r\n\r\nwhich are quite specific but could still occur by localization or transport.\r\n\r\nI am wondering if we can have a system where, if I add \r\n\"localizes\" to a parent node, if we subsequently add \"transports\" (a more specific relation) to a  descendent, it can 'trump' the 'localizes' prompt?\r\n\r\nThis would means that I would not need to add lots and lots of config lines for specific terms (really tricky in this branch).\r\n\r\nFor now, I am going to add 'localizes' for \r\nGO:0071989 establishment of protein localization to spindle pole body\r\nwhich means that \r\n\r\nGO:1990852\tprotein transport along microtubule to spindle pole body\r\nwill be 'localizes' instead of 'transports'\r\n\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/pombase/canto/issues/comments/227121568","html_url":"https://github.com/pombase/canto/issues/1148#issuecomment-227121568","issue_url":"https://api.github.com/repos/pombase/canto/issues/1148","id":227121568,"user":{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars.githubusercontent.com/u/90474?v=3","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"created_at":"2016-06-20T11:51:54Z","updated_at":"2016-06-20T11:51:54Z","body":"> Can we also use parentheses as described in #1040 (comment)?\r\n\r\nNot yet, but it's not a big change.  I'd prefer to give the current changes a day or two of testing before I try to implement it.  Please prod me if I forget."}}
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