{"action":"closed","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/494","repository_url":"https://api.github.com/repos/broadinstitute/gatk-protected","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/494/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/494/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk-protected/issues/494/events","html_url":"https://github.com/broadinstitute/gatk-protected/issues/494","id":153148996,"number":494,"title":"Reduce the RAM usage of CreatePanelOfNormals","user":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/labels/Copy%20Number%20tools","name":"Copy Number tools","color":"207de5"},{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/labels/WGS","name":"WGS","color":"fbca04"}],"state":"closed","locked":false,"assignee":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/7","html_url":"https://github.com/broadinstitute/gatk-protected/milestones/CNV%20Tools%20alpha-2%20release","labels_url":"https://api.github.com/repos/broadinstitute/gatk-protected/milestones/7/labels","id":1392082,"number":7,"title":"CNV Tools alpha-2 release","description":"#### ACNV\r\n\r\n- ACNV improvements, incl. Allelic PoN, CN LOH caller, more plotting, and (if time permits) improving calling balanced segments\r\n- ACNV additional evaluations, incl. \"Amaro's evaluation\"\r\n- case-only ACNV (if time permits)\r\n\r\n#### Germline\r\n- Germline improvements to algorithm\r\n- Germline exome evaluation\r\n- Germline gene panel evaluation\r\n- Tagging germline events in GATK CNV results\r\n\r\n#### WGS\r\n- WGS workflow, including performance (RAM/CPU time) improvements with spark\r\n\r\n#### Other\r\n- GC correction and eval on exome\r\n- Refactoring of copious Target/ReadCount classes (see issues)\r\n\r\n\r\n\r\n\r\n","creator":{"login":"LeeTL1220","id":2152339,"avatar_url":"https://avatars.githubusercontent.com/u/2152339?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeTL1220","html_url":"https://github.com/LeeTL1220","followers_url":"https://api.github.com/users/LeeTL1220/followers","following_url":"https://api.github.com/users/LeeTL1220/following{/other_user}","gists_url":"https://api.github.com/users/LeeTL1220/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeTL1220/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeTL1220/subscriptions","organizations_url":"https://api.github.com/users/LeeTL1220/orgs","repos_url":"https://api.github.com/users/LeeTL1220/repos","events_url":"https://api.github.com/users/LeeTL1220/events{/privacy}","received_events_url":"https://api.github.com/users/LeeTL1220/received_events","type":"User","site_admin":false},"open_issues":22,"closed_issues":33,"state":"open","created_at":"2015-11-03T19:42:51Z","updated_at":"2016-05-10T20:05:06Z","due_on":"2016-05-21T04:00:00Z","closed_at":null},"comments":0,"created_at":"2016-05-05T01:06:50Z","updated_at":"2016-05-10T20:05:05Z","closed_at":"2016-05-10T20:05:05Z","body":"See issue #493 for explanation and fix.\r\n"}}