{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/amigo/issues/299","repository_url":"https://api.github.com/repos/geneontology/amigo","labels_url":"https://api.github.com/repos/geneontology/amigo/issues/299/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/amigo/issues/299/comments","events_url":"https://api.github.com/repos/geneontology/amigo/issues/299/events","html_url":"https://github.com/geneontology/amigo/issues/299","id":133430953,"number":299,"title":"AmiGO filtering","user":{"login":"ValWood","id":7359272,"avatar_url":"https://avatars.githubusercontent.com/u/7359272?v=3","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/geneontology/amigo/labels/question","name":"question","color":"5319e7"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-02-13T13:16:14Z","updated_at":"2016-02-20T00:44:10Z","closed_at":"2016-02-17T22:56:55Z","body":"I was going to open a helpdesk ticket for this but jira appears to be down. I don't know if this is due to general problems at stanford as I had problems accessing AmiGO for the past hour two.\r\n\r\nI am trying  to get some numbers form either QuickGO  or AmiGO for a paper.\r\n\r\nFirst off, its really hard to get to top level of AmiGO if you just wanted to filter all annotations on specific taxon  (fungi) and experimental  evidence.\r\n\r\nTo do this I ended up typing a random search, accessing the “annotation” link and then deleting the remaining free text filter. I could not find any other way  to access at this point from the top level pages?\r\n\r\nI then wanted to apply filters to see how many manual annotations  there were to which fungal species.\r\nI thought I would filter on taxon “fungi’ and “experimental evidence codes.\r\nI forgot that I could not filter on  taxon groupings. Instead I filtered only on evidence, thinking that I could then remove the species I was not interested in, which would be tedious but should be possible.\r\nHere I got stuck because after I removed human and mouse AmiGO would not let me apply any more filters?\r\n\r\nI have a similar problem with QuickGO. With QuickGO I would be able to apply the appropriate filter because you can supply any grouping ID. However  again, I don’t know of a way to see all annotations (I think you would need to do each ontology root node independently). Perhaps you can do this in the new QuickGO?\r\n\r\nIf anyone has any ideas I’d be really grateful….\r\n\r\nI can't access Goose right now either, but I always have trouble getting large queries to complete...\r\n\r\nI can migrate this to another more appropirate tracker on Monday if desired."},"comment":{"url":"https://api.github.com/repos/geneontology/amigo/issues/comments/186468587","html_url":"https://github.com/geneontology/amigo/issues/299#issuecomment-186468587","issue_url":"https://api.github.com/repos/geneontology/amigo/issues/299","id":186468587,"user":{"login":"kltm","id":2687900,"avatar_url":"https://avatars.githubusercontent.com/u/2687900?v=3","gravatar_id":"","url":"https://api.github.com/users/kltm","html_url":"https://github.com/kltm","followers_url":"https://api.github.com/users/kltm/followers","following_url":"https://api.github.com/users/kltm/following{/other_user}","gists_url":"https://api.github.com/users/kltm/gists{/gist_id}","starred_url":"https://api.github.com/users/kltm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kltm/subscriptions","organizations_url":"https://api.github.com/users/kltm/orgs","repos_url":"https://api.github.com/users/kltm/repos","events_url":"https://api.github.com/users/kltm/events{/privacy}","received_events_url":"https://api.github.com/users/kltm/received_events","type":"User","site_admin":false},"created_at":"2016-02-20T00:44:10Z","updated_at":"2016-02-20T00:44:10Z","body":"@ValWood Your last comment seems to have not shown up here. Could you try again?"}}