{"action":"closed","issue":{"url":"https://api.github.com/repos/QIICR/dcmqi/issues/122","repository_url":"https://api.github.com/repos/QIICR/dcmqi","labels_url":"https://api.github.com/repos/QIICR/dcmqi/issues/122/labels{/name}","comments_url":"https://api.github.com/repos/QIICR/dcmqi/issues/122/comments","events_url":"https://api.github.com/repos/QIICR/dcmqi/issues/122/events","html_url":"https://github.com/QIICR/dcmqi/issues/122","id":188695442,"number":122,"title":"Support building against stable release: New Slicer patch release '4.6.3' needed ? ","user":{"login":"jcfr","id":219043,"avatar_url":"https://avatars.githubusercontent.com/u/219043?v=3","gravatar_id":"","url":"https://api.github.com/users/jcfr","html_url":"https://github.com/jcfr","followers_url":"https://api.github.com/users/jcfr/followers","following_url":"https://api.github.com/users/jcfr/following{/other_user}","gists_url":"https://api.github.com/users/jcfr/gists{/gist_id}","starred_url":"https://api.github.com/users/jcfr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jcfr/subscriptions","organizations_url":"https://api.github.com/users/jcfr/orgs","repos_url":"https://api.github.com/users/jcfr/repos","events_url":"https://api.github.com/users/jcfr/events{/privacy}","received_events_url":"https://api.github.com/users/jcfr/received_events","type":"User","site_admin":false},"labels":[{"id":318634541,"url":"https://api.github.com/repos/QIICR/dcmqi/labels/bug","name":"bug","color":"fc2929","default":true},{"id":407757535,"url":"https://api.github.com/repos/QIICR/dcmqi/labels/high%20priority","name":"high 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working on #121, I realized that the extension would NOT build against the build tree of the last stable release.\r\n\r\nAnd reported below are the results of compiling against the 4.6.2 build tree on the factories:\r\n\r\nThe failure is explained by the fact the release `4.6.2` does NOT include [r25482](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25482) and [r25499](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25499) that updated DCMTK from `271f1e9` to `DCMTK-3.6.1_20161102`. Change log reported below.\r\n\r\n@fedorov  Do you need to be able to build DCMQI and Reporting against the current stable release ? \r\n\r\nCc: @pieper \r\n\r\nIf yes, we would need to create `4.6.3` by backporting the following commits:\r\n* [r25482](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25482): ENH: Updating DCMTK to 3.6.1_2016.10.12\r\n *  Diff for DCMTK: https://github.com/InsightSoftwareConsortium/DCMTK/compare/271f1e9731cfb29d9451b484ff50a39e32e2c90a...efe1a177eac040b6d41aae0db7714cd970e12bc5\r\n * A new version of ITK is required to compile Slicer with DCMTK updated: https://github.com/Slicer/ITK/compare/16df9b689856cd4a8dd22a2cef92f5ee7222da0c...1168eba261e6a3c71c0372cc4cd833dd2d8fd693\r\n * A new version of CTK is required: https://github.com/commontk/CTK/compare/afe8505a8286a701900fca1c97a4ad8876bbbe1a...d2b30cd1d525bd7f3856503373760921ea82dfde\r\n * A new version of BRAINSTools is required: https://github.com/BRAINSia/BRAINSTools/compare/47dc8e66860be2bb074d17de18129978cb1ca93a...a5cfa21addf98d86da72f216d93e08913fa396d7  \r\n* [r25483](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25483): BUG: DiffusionTensor3DExtended should not use itkTypeMacro\r\n* [r25485](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25485): BUG: Use Spline order for 3 template parameter.\r\n* [r25499](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25499): ENH: Update to DCMTK-3.6.1_20161102\r\n* [r25508](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25508): ENH: Update ITK. Fixes #4290\r\n * fix \"already registered transform\" startup warning introduced by [r25482](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25482)\r\n\r\nAnd, while we are it, also these optional ones:\r\n* [r25498](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25498): BUG: Fixed DataProbe when slicer starts up with a chart in the layout\r\n* [r25501](http://viewvc.slicer.org/viewvc.cgi/Slicer4?view=revision&revision=25501): ENH: Use github for CMake HTTPS testing\r\n\r\n## DCMTK change log\r\n\r\n```bash\r\n$ git shortlog 271f1e9..DCMTK-3.6.1_20161102\r\nJan Schlamelcher (15):\r\n      Trying possible fix for OFvariant vs DLLs.\r\n      Fixes for OFvariant, dcmiod, dcmseg and dcmpmap.\r\n      Further fixes for OFvariant.\r\n      Fixed a problem in OFtuple's constructor.\r\n      Fixed wrong usage of checkStringValue() in dcmpmap.\r\n      Several fixes for dcmpstat.\r\n      Fixed 32 vs. 64 bit problem in dcmqrdb.\r\n      Fixed using third party libraries with MinGW.\r\n      Fixed a problem with a previous commit.\r\n      Added OFvariant implementation for C++11.\r\n      Added API documentation for OFvariant etc.\r\n      Updated Makefile dependencies.\r\n      Updated man pages for new development snapshot.\r\n      Updated DCMTK_ABI_VERSION for new development snapshot.\r\n      Updated CHANGES.361 for new development snapshot.\r\n\r\nJoerg Riesmeier (25):\r\n      Fixed typos in comments.\r\n      Changed type of local variable to avoid warning.\r\n      Added explicit type cast to avoid warning.\r\n      Fixed warnings with Clang -Wparentheses-equality.\r\n      Fixed typos in comments and log output.\r\n      Added support for Supplement 121 to dictionary.\r\n      Added support for new UIDs from Supplement 121.\r\n      Added support for recently approved CPs.\r\n      Updated coding scheme designator (CP-1567).\r\n      Fixed minor issues in modules' documentation.\r\n      Enhanced template class DSRListOfItems.\r\n      Added missing source file (new test cases).\r\n      Fixed linker errors on non-gcc platforms.\r\n      Fixed compiler warnings on unused variables.\r\n      Disable two test cases when building shared libs.\r\n      Added new DCMTK modules \"dcmtract\" and \"dcmpmap\".\r\n      Update data dictionary for DICOM 2016d.\r\n      Updated code definitions for DICOM 2016d.\r\n      Updated Context Group classes for DICOM 2016d.\r\n      Fixed typo in comments.\r\n      Updated \"dcmrt\" classes based on DICOM 2016d.\r\n      Added comment on recently added DICOM attributes.\r\n      Made clear that options +/-Uo require +Ug.\r\n      Output debug messages when updating attributes.\r\n      Added readXML mode that accepts empty/missing UID.\r\n\r\nMichael Onken (11):\r\n      Switched VR and VM in comment.\r\n      Moved import..() functionality into IODCommon.\r\n      Create SourceImageItem from DcmDataset as input.\r\n      Updated copyright.\r\n      Optimized iterator usage to speed up execution.\r\n      Introduced new module dcmpmap for Parametric Maps.\r\n      Remove default value for first parameter.\r\n      Make sure setValueType() sets correct string value.\r\n      Fixed typos and other enhancements.\r\n      Corrected value checking and setters for VM > 1.\r\n      Make Manufacturer type 2, consistency fixes.\r\n\r\nThorben Hasenpusch (3):\r\n      Fixed potential buffer overflow in libcharls.\r\n      Fixed and refactored mutex & rwlock tests.\r\n      Fixed include paths in DCMTK's package config file.\r\n```\r\n\r\n\r\n## Build error when building against DCMTK `271f1e9`\r\n\r\n### MacOSX (factory.kitware)\r\n\r\n```\r\ngit clone git://github.com/jcfr/dcmqi\r\nmkdir dcmqi-slicer-Release && cd $_\r\n\r\nSlicer_DIR=/Users/kitware/Dashboards/Package/Slicer-462-package/Slicer-build/\r\n~/Dashboards/Support/CMake-3.5.0-rc3.app/Contents/bin/cmake \\\r\n  -DSlicer_DIR:PATH=$Slicer_DIR \\\r\n  -DCMAKE_C_COMPILER=/Developer/usr/bin/clang \\\r\n  -DCMAKE_CXX_COMPILER=/Developer/usr/bin/clang++ \\\r\n  $(for opt in $(cat $Slicer_DIR/CMakeCache.txt | grep CMAKE_OSX | tr \"\\n\" \" \"); do echo -n \"-D$opt \"; done) \\\r\n  -DCMAKE_BUILD_TYPE:STRING=Release \\\r\n   ../dcmqi\r\nmake\r\n```\r\n\r\nThere is one build error:\r\n\r\n```\r\n/Users/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:339:56: error: no viable conversion from 'OFVector<DcmDataset *>'\r\n      to 'const OFVector<OFString>'\r\n           CHECK_COND(derimgItem->addSourceImageItems(siVector,\r\n            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~\r\n/Users/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/Exceptions.h:11:9: note: expanded from macro 'CHECK_COND'\r\n    if (condition.bad()) { \\\r\n        ^\r\n/Users/kitware/Dashboards/Package/Slicer-462-package/DCMTK/ofstd/include/dcmtk/ofstd/ofvector.h:94:5: note: candidate constructor not viable:\r\n      no known conversion from 'OFVector<DcmDataset *>' to 'const OFVector<OFString> &' for 1st argument;\r\n    OFVector(const OFVector& other) : values_(NULL), allocated_(0), size_(0)\r\n    ^\r\n/Users/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmfg/include/dcmtk/dcmfg/fgderimg.h:202:69: note: passing argument to parameter\r\n      'files' here\r\n  virtual OFCondition addSourceImageItems(const OFVector<OFString>& files,\r\n                                                                    ^\r\n/Users/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:339:56: error: no viable conversion from 'OFVector<DcmDataset *>'\r\n      to 'const OFVector<OFString>'\r\n            CHECK_COND(derimgItem->addSourceImageItems(siVector,\r\n            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~\r\n/Users/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/Exceptions.h:12:44: note: expanded from macro 'CHECK_COND'\r\n      std::cerr << \"Condition failed: \" << condition.text() << \" in \" __FILE__ << \":\" << __LINE__ << std::endl; \\\r\n                                           ^\r\n/Users/kitware/Dashboards/Package/Slicer-462-package/DCMTK/ofstd/include/dcmtk/ofstd/ofvector.h:94:5: note: candidate constructor not viable:\r\n      no known conversion from 'OFVector<DcmDataset *>' to 'const OFVector<OFString> &' for 1st argument;\r\n    OFVector(const OFVector& other) : values_(NULL), allocated_(0), size_(0)\r\n    ^\r\n/Users/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmfg/include/dcmtk/dcmfg/fgderimg.h:202:69: note: passing argument to parameter\r\n      'files' here\r\n  virtual OFCondition addSourceImageItems(const OFVector<OFString>& files,\r\n                                                                    ^\r\n2 errors generated.\r\nmake[5]: *** [libsrc/CMakeFiles/dcmqi.dir/ImageSEGConverter.cpp.o] Error 1\r\nmake[4]: *** [libsrc/CMakeFiles/dcmqi.dir/all] Error 2\r\nmake[3]: *** [all] Error 2\r\nmake[2]: *** [dcmqi-prefix/src/DCMQI-stamp/DCMQI-build] Error 2\r\nmake[1]: *** [CMakeFiles/DCMQI.dir/all] Error 2\r\nmake: *** [all] Error 2\r\n```\r\n\r\n## Linux (factory-south.kitware)\r\n\r\n```\r\ngit clone git://github.com/jcfr/dcmqi\r\nmkdir dcmqi-slicer-Release && cd $_\r\n\r\nSlicer_DIR=/home/kitware/Dashboards/Package/Slicer-462-package/Slicer-build/\r\n/home/kitware/Dashboards/Support/cmake-3.5.0-rc3-Linux-x86_64/bin/cmake \\\r\n  -DSlicer_DIR:PATH=$Slicer_DIR \\\r\n  -DCMAKE_BUILD_TYPE:STRING=Release \\\r\n   ../dcmqi\r\nmake\r\n```\r\n\r\nThere is one build error:\r\n\r\n```\r\n[  6%] Building CXX object libsrc/CMakeFiles/dcmqi.dir/ImageSEGConverter.cpp.o\r\nIn file included from /home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/modcommoninstanceref.h:32,\r\n                 from /home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/iodcommn.h:34,\r\n                 from /home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/iodimage.h:26,\r\n                 from /home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmseg/include/dcmtk/dcmseg/segdoc.h:27,\r\n                 from /home/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/ImageSEGConverter.h:12,\r\n                 from /home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:3:\r\n/home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/iodreferences.h:111: warning: ‘virtual bool IODReference::readFromFile(const OFString&)’ was hidden [-Woverloaded-virtual]\r\n/home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/iodreferences.h:207: warning:   by ‘virtual bool IODImageReference::readFromFile(const OFString&, OFVector<unsigned int>)’ [-Woverloaded-virtual]\r\n/home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/iodreferences.h:111: warning: ‘virtual bool IODReference::readFromFile(const OFString&)’ was hidden [-Woverloaded-virtual]\r\n/home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmiod/include/dcmtk/dcmiod/iodreferences.h:256: warning:   by ‘virtual bool IODSegmentationReference::readFromFile(const OFString&, OFVector<short unsigned int>)’ [-Woverloaded-virtual]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp: In static member function ‘static DcmDataset* dcmqi::ImageSEGConverter::itkimage2dcmSegmentation(std::vector<DcmDataset*, std::allocator<DcmDataset*> >, std::vector<itk::SmartPointer<itk::Image<short int, 3u> >, std::allocator<itk::SmartPointer<itk::Image<short int, 3u> > > >, const std::string&)’:\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:115: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:160: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:255: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:314: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:321: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:328: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:339: error: no matching function for call to ‘DerivationImageItem::addSourceImageItems(OFVector<DcmDataset*>&, CodeSequenceMacro, OFVector<SourceImageItem*>&)’\r\n/home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmfg/include/dcmtk/dcmfg/fgderimg.h:202: note: candidates are: virtual OFCondition DerivationImageItem::addSourceImageItems(const OFVector<OFString>&, const CodeSequenceMacro&, OFVector<SourceImageItem*>&, bool)\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:339: error: no matching function for call to ‘DerivationImageItem::addSourceImageItems(OFVector<DcmDataset*>&, CodeSequenceMacro, OFVector<SourceImageItem*>&)’\r\n/home/kitware/Dashboards/Package/Slicer-462-package/DCMTK/dcmfg/include/dcmtk/dcmfg/fgderimg.h:202: note: candidates are: virtual OFCondition DerivationImageItem::addSourceImageItems(const OFVector<OFString>&, const CodeSequenceMacro&, OFVector<SourceImageItem*>&, bool)\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:46: warning: unused variable ‘segFGInt’ [-Wunused-variable]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp: In static member function ‘static std::pair<std::map<unsigned int, itk::SmartPointer<itk::Image<short int, 3u> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, itk::SmartPointer<itk::Image<short int, 3u> > > > >, std::basic_string<char, std::char_traits<char>, std::allocator<char> > > dcmqi::ImageSEGConverter::dcmSegmentation2itkimage(DcmDataset*)’:\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:503: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:649: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:650: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:511: warning: unused variable ‘fracon’ [-Wunused-variable]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp: In static member function ‘static std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > dcmqi::ImageSEGConverter::getSliceMapForSegmentation2DerivationImage(std::vector<DcmDataset*, std::allocator<DcmDataset*> >, const itk::SmartPointer<itk::Image<short int, 3u> >&)’:\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:678: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\nIn file included from /home/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/ImageSEGConverter.h:25,\r\n                 from /home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:3:\r\n/home/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/ConverterBase.h: In static member function ‘static int dcmqi::ConverterBase::computeVolumeExtent(FGInterface&, vnl_vector<double>&, T&, double&, double&) [with T = itk::Point<double, 3u>]’:\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:448:   instantiated from here\r\n/home/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/ConverterBase.h:139: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\n/home/kitware/Dashboards/Experimental/dcmqi/libsrc/ImageSEGConverter.cpp:448:   instantiated from here\r\n/home/kitware/Dashboards/Experimental/dcmqi/include/dcmqi/ConverterBase.h:216: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]\r\nmake[5]: *** [libsrc/CMakeFiles/dcmqi.dir/ImageSEGConverter.cpp.o] Error 1\r\nmake[4]: *** [libsrc/CMakeFiles/dcmqi.dir/all] Error 2\r\nmake[3]: *** [all] Error 2\r\nmake[2]: *** [dcmqi-prefix/src/DCMQI-stamp/DCMQI-build] Error 2\r\nmake[1]: *** [CMakeFiles/DCMQI.dir/all] Error 2\r\nmake: *** [all] Error 2\r\n```"}}
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