{"repository":{"description":"use RNA transcripts to assess assembly - this program parses the output of a BLAT run of transcriptome vs. a genome. It returns 1) Total % mapped, 2) average %coverage of a mapping, and  3) number of transcripts mapping to a single contig/scaffold. It is simple to run. Just run the blat (transcripts vs. genome) and then run the script with the blat-output and your transcript-fasta-file as arguments.","homepage":"http://josephryan.github.com/baa.pl/","watchers":0,"stargazers":0,"forks":1,"fork":false,"size":276,"owner":"josephryan","private":false,"open_issues":0,"has_issues":true,"has_downloads":true,"has_wiki":true,"language":"Perl","created_at":"2013-01-22T04:56:10-08:00","pushed_at":"2013-08-17T06:54:31-07:00","master_branch":"master"},"actor_attributes":{"type":"User","name":"Joseph F. Ryan","company":"Sars International Centre for Marine Molecular Biology","location":"Bergen, Norway","email":"da39a3ee5e6b4b0d3255bfef95601890afd80709"},"url":"https://github.com/josephryan/baa.pl/compare/5e9abf2b28...a25917c542"}