y chromosome y chromosome the y chromosome is one of two sex chromosomes in therian mammals and other organisms. the other sex chromosome is the x chromosome. y is normally the sex-determining chromosome in many species, since it is the presence or absence of y that determines the male or female sex of offspring produced in sexual reproduction. in mammals, the y chromosome contains the gene sry, which triggers male development. the dna in the human y chromosome is composed of about 62 million base pairs, making it similar in size to chromosome 19. the y chromosome is passed only from father to son. with a 30% difference between humans and chimpanzees, the y chromosome is one of the fastest-evolving parts of the human genome. the human y chromosome carries 693 genes, with 107 of these being protein-coding, but some genes are repeated and that makes the number of exclusive protein-coding genes just 42, the numbers are given for telomere-to-telomere chm13. the consensus coding sequence (ccds) project only classified 63 out of 107. all single-copy y-linked genes are hemizygous (present on only one chromosome) except in cases of aneuploidy such as xyy syndrome or xxyy syndrome. because of fake gaps inserted in grch38 it may be not obvious that chm13 added 30 million base pairs into the y chromosome, which is almost half of it that was unknown before 2022 (and was present in many genbank samples by mistake unknown that it was y chromosome base pairs). human y chromosomehuman y chromosome (after g-banding)y chromosome in human male karyogramfeatureslength (bp)62,460,029 bp (chm13)no. of genes63 (ccds)typeallosomecentromere positionacrocentric(10.4 mbp)complete gene listsccdsgene listhgncgene listuniprotgene listncbigene listexternal map viewersensemblchromosome yentrezchromosome yncbichromosome yucscchromosome yfull dna sequencesrefseqnc_000024 (fasta) genbankcm000686 (fasta) overview discovery the y chromosome was identified as a sex-determining chromosome by nettie stevens at bryn mawr college in 1905 during a study of the mealworm tenebrio molitor. edmund beecher wilson independently discovered the same mechanisms the same year, working with hemiptera. stevens proposed that chromosomes always existed in pairs and that the smaller chromosome (now labelled "y") was the pair of the x chromosome discovered in 1890 by hermann henking. she realized that the previous idea of clarence erwin mcclung, that the x chromosome determines sex, was wrong and that sex determination is, in fact, due to the presence or absence of the y chromosome. in the early 1920s theophilus painter determined that x and y chromosomes determined sex in humans (and other mammals). the chromosome was given the name "y" simply to follow on from henking's "x" alphabetically. the idea that the y chromosome was named after its similarity in appearance to the letter "y" is mistaken. all chromosomes normally appear as an amorphous blob under the microscope and only take on a well-defined shape during mitosis. this shape is vaguely x-shaped for all chromosomes. it is entirely coincidental that the y chromosome, during mitosis, has two very short branches which can look merged under the microscope and appear as the descender of a y-shape. variations