infection infection an infection is the invasion of tissues by pathogens, their multiplication, and the reaction of host tissues to the infectious agent and the toxins they produce. an infectious disease, also known as a transmissible disease or communicable disease, is an illness resulting from an infection. "infectious disease" redirects here. for the medical specialty, see infectious diseases (medical specialty). for the journal, see infectious disease (journal). infectionfalse-colored electron micrograph showing a malaria sporozoite migrating through the midgut epithelium of a ratspecialtyinfectious diseasescausesbacterial, viral, parasitic, fungal, prion infections can be caused by a wide range of pathogens, most prominently bacteria and viruses. hosts can fight infections using their immune system. mammalian hosts react to infections with an innate response, often involving inflammation, followed by an adaptive response. specific medications used to treat infections include antibiotics, antivirals, antifungals, antiprotozoals, and antihelminthics. infectious diseases resulted in 9.2 million deaths in 2013 (about 17% of all deaths). the branch of medicine that focuses on infections is referred to as infectious diseases. types infections are caused by infectious agents (pathogens) including: bacteria (e.g. mycobacterium tuberculosis, staphylococcus aureus, escherichia coli, clostridium botulinum, and salmonella spp.) viruses and related agents such as viroids. (e.g. hiv, rhinovirus, lyssaviruses such as rabies virus, ebolavirus and severe acute respiratory syndrome coronavirus 2) fungi, further subclassified into: ascomycota, including yeasts such as candida (the most common fungal infection); filamentous fungi such as aspergillus; pneumocystis species; and dermatophytes, a group of organisms causing infection of skin and other superficial structures in humans. basidiomycota, including the human-pathogenic genus cryptococcus. parasites, which are usually divided into: unicellular organisms (e.g. malaria, toxoplasma, babesia) macroparasites (worms or helminths) including nematodes such as parasitic roundworms and pinworms, tapeworms (cestodes), and flukes (trematodes, such as schistosomes). diseases caused by helminths are sometimes termed infestations, but are sometimes called infections. arthropods such as ticks, mites, fleas, and lice, can also cause human disease, which conceptually are similar to infections, but invasion of a human or animal body by these macroparasites is usually termed infestation. prions (although they do not secrete toxins) signs and symptoms the signs and symptoms of an infection depend on the type of disease. some signs of infection affect the whole body generally, such as fatigue, loss of appetite, weight loss, fevers, night sweats, chills, aches and pains. others are specific to individual body parts, such as skin rashes, coughing, or a runny nose. in certain cases, infectious diseases may be asymptomatic for much or even all of their course in a given host. in the latter case, the disease may only be defined as a "disease" (which by definition means an illness) in hosts who secondarily become ill after contact with an asymptomatic carrier. an infection is not synonymous with an infectious disease, as some infections do not cause illness in a host. bacterial or viral as bacterial and viral infections can both cause the same kinds of symptoms, it can be difficult to distinguish which is the cause of a specific infection. distinguishing the two is important, since viral infections cannot be cured by antibiotics whereas bacterial infections can. comparison of viral and bacterial infection characteristic viral infection bacterial infection typical symptoms in general, viral infections are systemic. this means they involve many different parts of the body or more than one body system at the same time; i.e. a runny nose, sinus congestion, cough, body aches etc. they can be local at times as in viral conjunctivitis or "pink eye" and herpes. only a few viral infections are painful, like herpes. the pain of viral infections is often described as itchy or burning. the classic symptoms of a bacterial infection are localized redness, heat, swelling and pain. one of the hallmarks of a bacterial infection is local pain, pain that is in a specific part of the body. for example, if a cut occurs and is infected with bacteria, pain occurs at the site of the infection. bacterial throat pain is often characterized by more pain on one side of the throat. an ear infection is more likely to be diagnosed as bacterial if the pain occurs in only one ear. a cut that produces pus and milky-colored liquid is most likely infected. causepathogenic virusespathogenic bacteria pathophysiology chain of infection; the chain of events that lead to infection there is a general chain of events that applies to infections, sometimes called the chain of infection. the chain of events involves several steps – which include the infectious agent, reservoir, entering a susceptible host, exit and transmission to new hosts. each of the links must be present in a chronological order for an infection to develop. understanding these steps helps health care workers target the infection and prevent it from occurring in the first place. colonization infection of an ingrown toenail; there is pus (yellow) and resultant inflammation (redness and swelling around the nail). infection begins when an organism successfully enters the body, grows and multiplies. this is referred to as colonization. most humans are not easily infected. those with compromised or weakened immune systems have an increased susceptibility to chronic or persistent infections. individuals who have a suppressed immune system are particularly susceptible to opportunistic infections. entrance to the host at host-pathogen interface, generally occurs through the mucosa in orifices like the oral cavity, nose, eyes, genitalia, anus, or the microbe can enter through open wounds. while a few organisms can grow at the initial site of entry, many migrate and cause systemic infection in different organs. some pathogens grow within the host cells (intracellular) whereas others grow freely in bodily fluids. wound colonization refers to non-replicating microorganisms within the wound, while in infected wounds, replicating organisms exist and tissue is injured. all multicellular organisms are colonized to some degree by extrinsic organisms, and the vast majority of these exist in either a mutualistic or commensal relationship with the host. an example of the former is the anaerobic bacteria species, which colonizes the mammalian colon, and an example of the latter are the various species of staphylococcus that exist on human skin. neither of these colonizations are considered infections. the difference between an infection and a colonization is often only a matter of circumstance. non-pathogenic organisms can become pathogenic given specific conditions, and even the most virulent organism requires certain circumstances to cause a compromising infection. some colonizing bacteria, such as corynebacteria sp. and viridans streptococci, prevent the adhesion and colonization of pathogenic bacteria and thus have a symbiotic relationship with the host, preventing infection and speeding wound healing. this image depicts the steps of pathogenic infection. the variables involved in the outcome of a host becoming inoculated by a pathogen and the ultimate outcome include: the route of entry of the pathogen and the access to host regions that it gains the intrinsic virulence of the particular organism the quantity or load of the initial inoculant the immune status of the host being colonized as an example, several staphylococcal species remain harmless on the skin, but, when present in a normally sterile space, such as in the capsule of a joint or the peritoneum, multiply without resistance and cause harm. an interesting fact that gas chromatography–mass spectrometry, 16s ribosomal rna analysis, omics, and other advanced technologies have made more apparent to humans in recent decades is that microbial colonization is very common even in environments that humans think of as being nearly sterile. because it is normal to have bacterial colonization, it is difficult to know which chronic wounds can be classified as infected and how much risk of progression exists. despite the huge number of wounds seen in clinical practice, there are limited quality data for evaluated symptoms and signs. a review of chronic wounds in the journal of the american medical association's "rational clinical examination series" quantified the importance of increased pain as an indicator of infection. the review showed that the most useful finding is an increase in the level of pain makes infection much more likely, but the absence of pain (negative likelihood ratio range, 0.64–0.88) does not rule out infection (summary lr 0.64–0.88). disease disease can arise if the host's protective immune mechanisms are compromised and the organism inflicts damage on the host. microorganisms can cause tissue damage by releasing a variety of toxins or destructive enzymes. for example, clostridium tetani releases a toxin that paralyzes muscles, and staphylococcus releases toxins that produce shock and sepsis. not all infectious agents cause disease in all hosts. for example, less than 5% of individuals infected with polio develop disease. on the other hand, some infectious agents are highly virulent. the prion causing mad cow disease and creutzfeldt–jakob disease invariably kills all animals and people that are infected. persistent infections occur because the body is unable to clear the organism after the initial infection. persistent infections are characterized by the continual presence of the infectious organism, often as latent infection with occasional recurrent relapses of active infection. there are some viruses that can maintain a persistent infection by infecting different cells of the body. some viruses once acquired never leave the body. a typical example is the herpes virus, which tends to hide in nerves and become reactivated when specific circumstances arise. persistent infections cause millions of deaths globally each year. chronic infections by parasites account for a high morbidity and mortality in many underdeveloped countries. transmission main article: transmission (medicine) a southern house mosquito (culex quinquefasciatus) is a vector that transmits the pathogens that cause west nile fever and avian malaria among others.for infecting organisms to survive and repeat the infection cycle in other hosts, they (or their progeny) must leave an existing reservoir and cause infection elsewhere. infection transmission can take place via many potential routes: droplet contact, also known as the respiratory route, and the resultant infection can be termed airborne disease. if an infected person coughs or sneezes on another person the microorganisms, suspended in warm, moist droplets, may enter the body through the nose, mouth or eye surfaces. fecal-oral transmission, wherein foodstuffs or water become contaminated (by people not washing their hands before preparing food, or untreated sewage being released into a drinking water supply) and the people who eat and drink them become infected. common fecal-oral transmitted pathogens include vibrio cholerae, giardia species, rotaviruses, entameba histolytica, escherichia coli, and tape worms. most of these pathogens cause gastroenteritis. sexual transmission, with the resulting disease being called sexually transmitted disease oral transmission, diseases that are transmitted primarily by oral means may be caught through direct oral contact such as kissing, or by indirect contact such as by sharing a drinking glass or a cigarette. transmission by direct contact, some diseases that are transmissible by direct contact include athlete's foot, impetigo and warts. vehicle transmission, transmission by an inanimate reservoir (food, water, soil) vertical transmission, directly from the mother to an embryo, fetus or baby during pregnancy or childbirth. it can occur as a result of a pre-existing infection or one acquired during pregnancy. iatrogenic transmission, due to medical procedures such as injection or transplantation of infected material. vector-borne transmission, transmitted by a vector, which is an organism that does not cause disease itself but that transmits infection by conveying pathogens from one host to another. the relationship between virulence versus transmissibility is complex; with studies have shown that there were no clear relationship between the two. there is still a small number of evidence that partially suggests a link between virulence and transmissibility. diagnosis diagnosis of infectious disease sometimes involves identifying an infectious agent either directly or indirectly. in practice most minor infectious diseases such as warts, cutaneous abscesses, respiratory system infections and diarrheal diseases are diagnosed by their clinical presentation and treated without knowledge of the specific causative agent. conclusions about the cause of the disease are based upon the likelihood that a patient came in contact with a particular agent, the presence of a microbe in a community, and other epidemiological considerations. given sufficient effort, all known infectious agents can be specifically identified. the benefits of identification, however, are often greatly outweighed by the cost, as often there is no specific treatment, the cause is obvious, or the outcome of an infection is benign. diagnosis of infectious disease is nearly always initiated by medical history and physical examination. more detailed identification