chromosome 17 chromosome 17 chromosome 17 is one of the 23 pairs of chromosomes in humans. people normally have two copies of this chromosome. chromosome 17 spans more than 84 million base pairs (the building material of dna) and represents between 2.5 and 3% of the total dna in cells. chromosome 17human chromosome 17 pair after g-banding.one is from mother, one is from father.chromosome 17 pair in human male karyogram.featureslength (bp)84,276,897 bp(chm13)no. of genes1,124 (ccds)typeautosomecentromere positionsubmetacentric(25.1 mbp)complete gene listsccdsgene listhgncgene listuniprotgene listncbigene listexternal map viewersensemblchromosome 17entrezchromosome 17ncbichromosome 17ucscchromosome 17full dna sequencesrefseqnc_000017 (fasta) genbankcm000679 (fasta) chromosome 17 contains the homeobox b gene cluster. genes number of genes the following are some of the gene count estimates of human chromosome 17. because researchers use different approaches to genome annotation their predictions of the number of genes on each chromosome varies (for technical details, see gene prediction). among various projects, the collaborative consensus coding sequence project (ccds) takes an extremely conservative strategy. so ccds's gene number prediction represents a lower bound on the total number of human protein-coding genes. estimated by protein-coding genes non-coding rna genes pseudogenes source release date ccds1,124—— 2016-09-08 hgnc1,132325458 2017-05-12 ensembl1,1841,199535 2017-03-29 uniprot1,169—— 2018-02-28 ncbi1,199757566 2017-05-19 gene list the following is a partial list of genes on human chromosome 17. for complete list, see the link in the infobox on the right. 2700099c18rik: encoding protein ndc80 homolog, kinetochore complex component pseudogene abi3: encoding protein abi gene family member 3 abr: encoding protein abr, rhogef and gtpase activating protein arhgap44: encoding protein rho gtpase activating protein 44 azi1: encoding protein 5-azacytidine-induced protein 1 brca1p1: encoding protein brca1 pseudogene 1 bcpr encoding protein breast cancer-related regulator of tp53 c17orf98: encoding protein c17orf98 c1ql1: encoding protein complement component 1, q subcomponent-like 1 ccdc144a: encoding protein coiled-coil domain-containing protein 144a ccdc40: encoding protein coiled-coil domain containing 40 ccdc47: encoding protein ccdc47 ccdc57: encoding protein coiled-coil domain-containing protein 57 cluh: encoding protein clustered mitochondria (clua/clu1) homolog ctdnep1: encoding protein ctd nuclear envelope phosphatase 1 del17p13.1 encoding protein chromosome 17p13.1 deletion syndrome dhx8: encoding protein deah-box helicase 8 dph1 encoding protein diphthamide biosynthesis protein 1 dup17q12: encoding protein chromosome 17q12 duplication syndrome fam20a: encoding protein fam20a gas7: encoding protein growth arrest-specific protein 7 ggt6: encoding protein gamma-glutamyltransferase 6 hn1: encoding protein hematological and neurological expressed 1 protein ibd22 encoding protein inflammatory bowel disease-22 krtap locus: encoding ca. 40 keratin-associated proteins linc00511: encoding protein long intergenic non-protein coding rna 511 linc00674 encoding protein long intergenic non-protein coding rna 674 lrrc37a encoding protein leucine rich repeat containing 37a lrrc48: encoding protein leucine-rich repeat-containing protein 48 mbtd1: encoding protein malignant brain tumor domain containing 1 mettl16: encoding protein methyltransferase like 16 mgat5b: encoding enzyme alpha-1,6-mannosylglycoprotein 6-beta-n-acetylglucosaminyltransferase b mir195: encoding protein microrna 195 mir4521: encoding protein microrna 4521 mllt6: encoding protein mllt6, phd finger containing msi2: encoding protein musashi rna binding protein 2 mybbp1a: encoding protein myb-binding protein 1a mycbpap: encoding protein mycbp associated protein nbp: encoding peptide neuropeptide b nme1-nme2: nxph3: encoding protein neurexophilin-3 omg: encoding protein oligodendrocyte-myelin glycoprotein ormdl sphingolipid biosynthesis regulator 3: encoding protein ormdl sphingolipid biosynthesis regulator 3 plxdc1: encoding protein plexin domain-containing protein 1 pnpo: encoding enzyme pyridoxine-5'-phosphate oxidase ppp1r27: encoding protein protein phosphatase 1, regulatory subunit 27 prcd: encoding protein progressive rod-cone degeneration prpsap2: encoding protein phosphoribosyl pyrophosphate synthetase-associated protein 2 prr29: encoding protein proline-rich protein 29 qrich2: encoding protein glutamine-rich protein 2 rap1gap2: encoding protein rap1 gtpase activating protein 2 rffl: encoding enzyme e3 ubiquitin-protein ligase rififylin rnmtl1: encoding enzyme rna methyltransferase-like protein 1 rpain: encoding protein rpa-interacting protein rpl23a: encoding protein 60s ribosomal protein l23a sc65: encoding protein synaptonemal complex protein sc65 scpep1: encoding enzyme retinoid-inducible serine carboxypeptidase sebox: encoding protein sebox homeobox sectm1: encoding protein secreted and transmembrane protein 1 septin4: encoding septin4 ska2: encoding protein spindle and kinetochore associated slc39a11: encoding protein solute carrier family 39 member 11 slfn11: encoding protein schlafen family member 11 slfn12: encoding protein schlafen family member 12 snf8: encoding protein vacuolar-sorting protein snf8 spaca3: sperm acrosome membrane-associated protein 3 spag5: encoding protein sperm-associated antigen 5 st6galnac1: encoding enzyme alpha-n-acetylgalactosaminide alpha-2,6-sialyltransferase 1 st6galnac2: encoding enzyme alpha-n-acetylgalactosaminide alpha-2,6-sialyltransferase 2 sth: encoding protein saitohin suz12p1 encoding protein suz12 polycomb repressive complex 2 subunit pseudogene 1 tac4: encoding protein tachykinin-4 tbc1d3: encoding protein tbc1 domain family member 3e/3f tmem106a: encoding protein transmembrane protein 106a tmem98: encoding protein transmembrane protein 98 tnfsf12-tnfsf13: tom1l1: encoding protein tom1-like protein 1 tom1l2: encoding protein tom1-like protein 2 trim65: encoding protein tripartite motif containing 65 trpv1: encoding protein transient receptor potential cation channel subfamily v member 1 tsen54: encoding protein trna splicing endonuclease subunit 54 ttyh2: encoding protein tweety family member 2 vat1: encoding protein synaptic vesicle membrane protein vat-1 homolog vps25: encoding protein vacuolar protein-sorting-associated protein 25 vps53: encoding protein vacuolar protein sorting 53 homolog (s. cerevisiae) ybx2: encoding protein y-box-binding protein 2 znf207: encoding protein zinc finger protein 207 znf830: encoding protein zinc finger protein 830 several cc chemokines: ccl1, ccl2, ccl3, ccl4, ccl5, ccl7, ccl8, ccl11, ccl13, ccl14, ccl15, ccl16, ccl18, and ccl23 the following are some of the genes and their corresponding cytogenetic location on chromosome 17: p-arm flcn: folliculin (17p11.2) myo15a: myosin xva (17p11.2) rai1: retinoic acid induced 1 (17p11.2) pmp22: peripheral myelin protein 22 (17p12) ctns: cystinosin, the lysosomal cystine transporter (17p13) usp6: ubiquitin carboxyl-terminal hydrolase 6 linked to aneurysmal bone cyst (17p13) acadvl: acyl-coenzyme a dehydrogenase, very long chain (17p13.1) shbg: sex hormone binding globulin (17p13.1) tp53: tumor suppressor protein p53 (li-fraumeni syndrome), tumor suppressor gene (17p13.1) aspa: aspartoacylase (canavan disease) (17p13.3) glod4: glyoxalase domain containing 4 (17p13.3) q-arm ccdc55: coiled-coil domain-containing protein 55 (17q11.2) flot2: flotillin 2 (17q11.2) nf1: neurofibromin 1 (neurofibromatosis, von recklinghausen disease, watson disease) (17q11.2) slc6a4: serotonin transporter linked to obsessive compulsive disorder (ocd) (17q11.2) ccl4l1: c-c motif chemokine ligand 4 like 1 (17q12) ddx52: dexd-box helicase 52 (17q12) erbb2 loca leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) (17q12) grb7: growth factor receptor-bound protein 7 (17q12) brca1: breast cancer 1, early onset (17q21) gfap: glial fibrillary acidic protein (17q21) rara or rar-alpha: retinoic acid receptor alpha (involved in t(15,17) with pml) (17q21) mapt gene coding for encoding tau protein (17q21.1) naglu: n-acetyl glucosaminidase, sanfilippo b syndrome (17q21.2) slc4a1: band 3 anion transporter protein. solute carrier family 4, member 1 (17q21.31) cbx1: chromobox homolog 1 (17q21.32) col1a1: collagen, type i, alpha 1 (17q21.33) luc7l3: luc7 like 3 pre-mrna splicing factor (17q21.33) nog: noggin protein (17q22) rps6kb1 or s6k: ribosomal protein s6-kinase (17q23.1) ftsj3: ftsj homolog 3 (17q23.3) scn4a: voltage-gated sodium channel subunit alpha nav1.4 (17q23.3) galk1: galactokinase 1 (17q24) kcnj2: potassium inwardly-rectifying channel, subfamily j, member 2 (17q24.3) actg1: actin, gamma 1 (17q25) cdc42ep4: cdc42 effector protein 4 (17q25.1) ush1g: usher syndrome 1g (autosomal recessive) (17q25.1) cant1: calcium-activated nucleotidase 1 (17q25.3) birc5: survivin (17q25.3) chmp6: charged multivesicular body protein 6 (17q25.3) enpp7: ectonucleotide pyrophosphatase/phosphodiesterase 7 (17q25.3) epr1: effector cell peptidase receptor 1 (17q25.3 rhbdf2: rhomboid family member 2 (17q25.3) tmc6 and tmc8: transmembrane channel-like 6 and 8 (epidermodysplasia verruciformis) (17q25.3) wt4: encoding protein wilms tumor-4 diseases and disorders inactivating ph mutation in either the ever1 or ever2 genes, which are located adjacent to one another on chromosome 17 causes epidermodysplasia verruciformis. the following diseases are related to genes on chromosome 17: 17q12 microdeletion syndrome koolen–de vries syndrome alexander disease andersen–tawil syndrome aneurysmal bone cyst birt–hogg–dubé syndrome bladder cancer breast cancer bruck syndrome campomelic dysplasia canavan disease cerebroretinal microangiopathy with calcifications and cysts charcot–marie–tooth disease chronic lymphocytic leukaemia, tp53 corticobasal degeneration cystinosis depression ehlers–danlos syndrome epidermodysplasia verruciformis frontotemporal dementia and parkinsonism linked to chromosome 17 galactosemia glycogen storage disease type ii (pompe disease) hereditary neuropathy with liability to pressure palsies howel–evans syndrome li–fraumeni syndrome maturity onset diabetes of the young type 5 miller–dieker syndrome multiple synostoses syndrome neurofibromatosis type i nonsyndromic deafness obsessive–compulsive disorder osteogenesis imperfecta potocki–lupski syndrome proximal symphalangism sanfilippo syndrome smith–magenis syndrome usher syndrome very long-chain acyl-coenzyme a dehydrogenase deficiency von gierke's syndrome cytogenetic band g-banding ideograms of human chromosome 17g-banding ideogram of human chromosome 17 in resolution 850 bphs. band length in this diagram is proportional to base-pair length. this type of ideogram is generally used in genome browsers (e.g. ensembl, ucsc genome browser).g-banding patterns of human chromosome 17 in three different resolutions (400, 550 and 850). band length in this diagram is based on the ideograms from iscn (2013). this type of ideogram represents actual relative band length observed under a microscope at the different moments during the mitotic process. g-bands of human chromosome 17 in resolution 850 bphs chr. arm band iscnstart iscnstop basepairstart basepairstop stain density 17p 13.3038513,400,000 gneg 17p 13.23855503,400,0016,500,000 gpos50 17p 13.15507846,500,00110,800,000 gneg 17p 1278499010,800,00116,100,000 gpos75 17p 11.2990149916,100,00122,700,000 gneg 17p 11.11499166422,700,00125,100,000 acen 17q 11.11664181525,100,00127,400,000 acen 17q 11.21815210427,400,00133,500,000 gneg 17q 122104225533,500,00139,800,000 gpos50 17q 21.12255246139,800,00140,200,000 gneg 17q 21.22461259940,200,00142,800,000 gpos25 17q 21.312599287442,800,00146,800,000 gneg 17q 21.322874302546,800,00149,300,000 gpos25 17q 21.333025317649,300,00152,100,000 gneg 17q 223176338352,100,00159,500,000 gpos75 17q 23.13383345159,500,00160,200,000 gneg 17q 23.23451365860,200,00163,100,000 gpos75 17q 23.33658378163,100,00164,600,000 gneg 17q 24.13781385064,600,00166,200,000 gpos50 17q 24.23850400166,200,00169,100,000 gneg 17q 24.34001416669,100,00172,900,000 gpos75 17q 25.14166440072,900,00176,800,000 gneg 17q 25.24400451076,800,00177,200,000 gpos25 17q 25.34510495077,200,00183,257,441 gneg