list of biomedical cybernetics software list of biomedical cybernetics software the following is a list of software packages and applications for biocybernetics research. data formats and specifications systems biology markup language (sbml) biological pathway exchange (biopax) cellml minimum information about a simulation experiment (miase) minimum information required in the annotation of models (miriam) systems biology ontology (sbo) systems biology graphical notation (sbgn) libraries for software development cyberunits, a class library for computer simulations in life sciences software products simthyr – simulation system for thyroid homeostasis