Department of Biology, University of Copenhagen; DTU Compute, Technical University of Denmark; Department of Computer Science, University of Copenhagen; Computational Health Center, Helmholtz Center Munich; Digital Science & Innovation, Novo Nordisk A/S; Bioinformatics & Design, Enzyme Research, Novozymes A/S
Frederikke Marin, Felix Teufel, Marc Horlacher, Dennis Madsen, Dennis Pultz, Ole Winther, Wouter Boomsma
Biological sequence analysis;enhancer annotation;gene finding;gene annotation;Language model;genome modelling;benchmark;LLM;embeddings;representations;DNA
BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks