Higher relative number of sequence reads related to 
lower respiratory tract infection
LOWER RESPIRATORY TRACT INFECTION
We then characterized the antimicrobial resistome encoded in the infant gut microbiota using metagenomic sequence reads (Fig. Differential abundance of genes associated with antimicrobial resistance in infants with diagnosed lower respiratory tract infection compared with matched controls. Genes related to proteins involved in antibiotic efflux systems in the bacterial species related to gut dysbiosis, i.e., 