Prediction of immune response and tumor microenvironment deconvolution
ICR scores were computed for each sample using a single-sample GSEA (ssGSEA) based on the Mann–Whitney–Wilcoxon Gene Set Test (MWW-GST)MIRACLE scores were computed using the MIRACLE R package as described in Turan et al.Melanocytic plasticity signature (MPS) score was computed as described in Pérez-Guijarro et al.Estimation of immune and stromal subpopulation abundances was computed using MCP-counter