Whole genome sequencing and analysis
Whole genome sequencing was performed using the Next generation sequencing platform HiSeq X10 (Illumina, San Diego, CA, USA) at MicrobesNG (Microbes NG, Birmingham, UK). Quality filtering and sequencing short read trimming were performed by MicrobesNG using SPAdes and annotated in GenBank. Short read sequences were assembled using Unicycler at MicrobesNG.For allocation of multi-locus sequence typing (MLST) and clonal complex, we used the online MLST database website Identification of acquired resistance was performed using the web-based platform ResFinder v3.2 of the Center for Genomic Epidemiology (For identification of mobile genetic elements and their related acquired antimicrobial resistance we used the Center for Genomic Epidemiology MobileElement Finder v1.0.3 (This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the BioProject number PRJNA918594.