In their indictment prosecutors alleged that Ndindiliyimana played a central role in drawing up a blueprint to exterminate the Tutsi population as well as political opponents of the Hutu government along with ordering specific massacres and crimes against humanity upon the Tutsi population.
The indictment charges Ndindiliyimana with playing a central role in creating a blueprint for the genocide of the Tutsi population, along with targeting political dissidents of the Hutu regime. He is also accused of orchestrating specific massacres and acts of mass violence against the Tutsi people.