They became part of Independent League of Kosovo and became one of the dominant football clubs in Kosovo by winning the Kosovar Cup in 1992 and the Independent League of Kosovo in 1993.In 1996 Trepça relegated to the First Football League of Kosovo.
Trepça's journey as a football club is characterized by its rise to prominence within the Independent League of Kosovo, culminating in their success in winning both the Kosovar Cup and the Independent League of Kosovo titles in 1992 and 1993.  Their subsequent relegation to the First Football League of Kosovo in 1996 signifies a shift in their competitive landscape.