When Captain Yamatone's unit, along with Akira and Pearl's granddaughter Emily, searches for the material for the lens on a mysterious island they soon realize is Atlantis, they are attacked by the evil forces of the Ruler of the Universe Nazō (ナゾー) in a drill-shaped tower ship, who is the one who sent Icarus towards Earth, and force Yamatone to retreat into an ancient tomb holding a sarcophagus with a prophecy that after 10,000 years, a crisis will inevitably come and to awaken the one within to fight it. Just as Nazō's men burst in and try and surround the institute's people, Emily places water on Ogon Bat's chest and revives him.
In this scenario, Captain Yamatone's team, including Akira and Pearl's granddaughter Emily, embarks on a quest to find lens material on an island that is ultimately revealed to be Atlantis. They are then confronted by the evil forces of NazŃ in a drill-shaped spaceship, leading Yamatone to seek refuge in an ancient tomb with a prophecy about a future crisis. Just as NazŃ' s men try to encircle the institute's personnel, Emily uses water to revive Ogon Bat.