Initially, Normannognathus was classified to the family Germanodactylidae, sister taxon to Germanodactylus, however, many recent analysis have recovered Normannognathus in different phylogenetic positions, and depending on different authors, Normannognathus is either found as a basal member of the Dsungaripteroidea, as an indeterminate monofenestratan, or as the sister taxon of Cycnorhamphus within the family Gallodactylidae.
Initially, Normannognathus was placed alongside Germanodactylus in the Germanodactylidae family; however, contemporary analyses have revealed diverse positions for this species within various evolutionary lineages.