In 1989, he transferred to Santa Clara University where he spent the next two seasons. In 1989, Baichers first year with the Broncos, the team won the NCAA championship title against Virginia after the two schools played even through four overtimes. 1989 Baicher was named NCAA player of the year and was scouted by Manchester United and the US National Team.
Baicher's transition to Santa Clara University in 1989 marked the beginning of his next two-year stint at the university. The following season, his first with the Broncos, ended in a dramatic championship win over Virginia after an intense playoff period that lasted four overtimes. Baicher's exceptional performance earned him the NCAA player of the year award, and he was also pursued by top clubs like Manchester United and the US National Team.