Stojkovski started his career playing with his home town club FK Pelister, back then playing in the Yugoslav Second League. In 1991 his skills were noted and he moves to the 1991 European Champions Red Star Belgrade where he stayed four seasons and played over 120 games. In the legendary 100th eternal derby against their greatest rivals Partizan, he scored and was named the man of the match.
Stojkovski started his career with FK Pelister in Yugoslavia's Second League. In 1991, his abilities were recognized, and he moved to Red Star Belgrade where he played for four seasons and made over 120 appearances. During the famous 100th eternal derby against Partizan, he scored a goal and was named man of the match.