The following season was interrupted by an achilles injury for Brandon. It was not until February 2007, that Brandon scored his first goal of the 2006–07 season, during Huddersfield Town's 2–1 defeat to Crewe Alexandra.
Brandon's next season was derailed by an ankle sprain. He didn't find his footing until February 2007, when he finally scored a goal in the 2006-2007 campaign, as Huddersfield Town fell to Crewe Alexandra with a score of 2-1.