Initially, Normannognathus was classified to the family Germanodactylidae, sister taxon to Germanodactylus, however, many recent analysis have recovered Normannognathus in different phylogenetic positions, and depending on different authors, Normannognathus is either found as a basal member of the Dsungaripteroidea, as an indeterminate monofenestratan, or as the sister taxon of Cycnorhamphus within the family Gallodactylidae.
Initially, Normannognathus belonged to the family Germanodactylidae alongside Germanodactylus; nonetheless, many recent studies have placed it in different evolutionary roles.