Their cladogram is shown on the left. In 2020, a different topology by Borja Holgado and Rodrigo Pêgas recovered Ludodactylus within the family Anhangueridae, more specifically to the subfamily Anhanguerinae, sister taxon to both Caulkicephalus and Guidraco.
Their phylogenetic tree is depicted on the left. In 2020, a distinct topology by Borja Holgado and Rodrigo Pêgas placed Ludodactylus within the family Anhangueridae, more specifically to the subfamily Anhanguerinae, sister taxon to both Caulkicephalus and Guidraco.