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[EOR]
[BOC]
The JR pass is for inter-city travel. Inside cities, it can be used on some lines but that's not the main use. 

My usual advice (haven't read your itinerary accurately to check if it's doable) : stay in Tokyo area, without the pass, for a few days at the start and end of your trip. In the middle, use a 7-day pass to go to kansai. 

If you want to travel further and longer, a 14 day pass can be worth it. Just always have Tokyo at both ends so your pass covers the return trip without wasting too many days not using it. 
[EOC]
