In October 2006, Cooper returned to Scottish football with Second Division Peterhead, as he took on the role of first team coach under the management of Steve Paterson. When Paterson left Peterhead in early 2008, Cooper took over as manager. Peterhead narrowly missed out on the end of season playoffs for a place in the Scottish First Division in 2008 finishing 5th, however he guided the Blue Toon to 4th the following season and a playoff against 2nd bottom Airdrie United from Division One.
Paterson
Cooper